BAC Information

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BAC

Clone NameB6Ng01-216H13
Chromosome7 (Build37)
Map Location 23,498,478 - 23,655,884
singlet/doubletdoublet
Overlap geneLOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758
Upstream geneLOC100043607, LOC100043019, LOC100043025, EG667404, EG435940, LOC100043026, EG545929, LOC667421, LOC100043614, LOC667431, LOC100043029, EG620736, EG667444, LOC100043033, LOC100043037, EG667464, EG667469, EG667472, EG667094, LOC100043625, LOC100043626, LOC100043043, LOC100043048, LOC100043632, EG667485, V1rd14, LOC100043051, LOC100043058, EG435947, EG667504, EG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543
Downstream geneEG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216H13.bB6Ng01-216H13.g
ACCGA033152GA033153
length9571,155
definitionB6Ng01-216H13.b B6Ng01-216H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,498,478 - 23,499,436)(23,654,750 - 23,655,884)
sequence
gaattccagcccagggccagctcagactagggcattgttgaaggccaggg
agcaaagttcgatttggcttaaatattgagcaagtcattgcttggaggca
cctataataaaacaatactgaaagaaaacacccagatccattcgcaagga
caagtttggagcatttattatacaggatgctatggttccaggagactaag
tttccgtgaaactctttgcctcaggactgcttccaggtttctaagcctgt
caagtgagtcactactagagtagatgtagcagggtggctccacctccatc
ctgaggctggccaccaataatgggttcttctcaaatgacagcaactttct
gatggacaacctcttcttgtttgatgtcctcttcctgggtgaggttcttt
tttccatgagggtctctttctctaagatatccccagaggaggatcctgga
acacctacactcttaggtggctgcaggtatccacagagctcctcttgggg
actgcatgaggacatattcctgtcaggcttctatgtaatgactctcatgg
tcctgacaatgctgtggcttgcggtgcctgggaaatctgtgtggaagtaa
gtggtaaacatgcctcactgcccctgatcatggggtgactcatgatttgg
tggatggagggcctcctgctgggattgatcatctgcagtacgatgatgac
attgagaatatctatggaaacctgggaagggatgctgaacttcgcagaga
tgatctcctgctttaagtccaccaaatacctgccttggaaaggcaagttc
ccagataccatgaggaacagaggacccctaactccagatatcttcaggcg
gcccctcttattatctccgcttgcatacttccggggcacagtagggcagc
gagctataggaaacctgcctgcttctgatgctggaatcacatcaacagcc
aagccaa
gaattccatacaattaggaggaaggagaggcttcaattgggatgtaacta
aatcaataacaaataaaagaatatataaatgcaacataaaaataattaac
tgaatttccttatgttatagtaacatattaaaaatattatgtatgggata
atataatattgcacacaacaatgaagttgtgtaaccgaattcagttgtag
aaaattgagttgttgtcttttgagaaaattttatactactcatcctaaaa
aattttaaaaaaacaccaaatatttctgataaagccacctgtgttgtaat
cacacggatgaacataggcttacatatgtgtcctccatatgaaaaaaaac
cacttgctaacaagttccatttattcataattttactgatcatagttttt
gttctaaaatgtgaggtgccagaatcttacctgcatcatctgcagattcc
ctccaaaattattaacacaatccctttgcagtaatataatataatacaat
acaatataatataatcccaataccctttgcaagctgatgcttagtctgca
ctttacttatttatatgttttctataagagcaagagggcctccatccacc
aggtataattcattatctcacatgcatatgttacacgaaatgctgttttc
tcctgagtactaatctaggacacagacatttctttgacatgaaagcaaaa
tattaacctattcaagttaacctgcagacttcagaaagaaataatgtttc
atgttgggcttcagaagacaattttcactgaagaaaagaggaaagaattt
taagtagaagtctatgggttgaaagaatcccaccttctgagactcagtca
ggatgaagatgctcatcttgaaaggccagctacaggagcacagctcctat
agaagcatattttcctagtgcctaaattgaggaaacttctctgtgtcact
ctttgcctgagaaagaatgtattgaaatttcagaattggttttctattct
tcaatgccgatgctgtaaatataacacaacaaagttcttagtttccaagg
cttcattaaataatagggactggcacttgacattctttcagaagaggttt
tattatcagtcattctggggcgttagggcacatttgtgctgcaatggtgc
tttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_23498478_23499436
seq2: B6Ng01-216H13.b_38_994

seq1  GAATTCCAAGCCCAGGGCCAGCTCAAGACTAGGGCATTGTTGAAGGCCAG  50
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  GAATTCC-AGCCCAGGGCCAGCTC-AGACTAGGGCATTGTTGAAGGCCAG  48

seq1  GGAGCAAAGTTCGATTTGGCTTAGATATTGAGCAAGTCATTGCTTGGAGG  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGAGCAAAGTTCGATTTGGCTTAAATATTGAGCAAGTCATTGCTTGGAGG  98

seq1  CACCTATAATAAAACAATACTGAAAGAAAACACACAGATCCATTCGCAAG  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACCTATAATAAAACAATACTGAAAGAAAACACCCAGATCCATTCGCAAG  148

seq1  GACAAGTTTGGAGCATTTATTATACGGGATGCTATGGTTCCAGGAGACTA  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GACAAGTTTGGAGCATTTATTATACAGGATGCTATGGTTCCAGGAGACTA  198

seq1  AGTTTCCGTGAAACTCTTTGCCTCAGGACTGCTTCCAGGTTTCTAAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCGTGAAACTCTTTGCCTCAGGACTGCTTCCAGGTTTCTAAGCCT  248

seq1  GTCAAGTGAGTCACTACTAGAGTAGATGTAGCAGGGTGGCTCCACCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTGAGTCACTACTAGAGTAGATGTAGCAGGGTGGCTCCACCTCCA  298

seq1  TCCTGAGGCTGGCCACCAATAATGGGTTCTTCTCAAATGACAGCAACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGCTGGCCACCAATAATGGGTTCTTCTCAAATGACAGCAACTTT  348

seq1  CTGATGGACAACCTCTTCTTGTTTGATGTCCTCTTCCTGGGTGAGGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGACAACCTCTTCTTGTTTGATGTCCTCTTCCTGGGTGAGGTTCT  398

seq1  TTTTTCCATGAGGGTCTCTTTCTCTAAGATATCCCCAGAGGAGGATCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATGAGGGTCTCTTTCTCTAAGATATCCCCAGAGGAGGATCCTG  448

seq1  GAACACCTACACTCTTAGGTGGCTGCAGGTATCCACAGAGCTCCTCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCTACACTCTTAGGTGGCTGCAGGTATCCACAGAGCTCCTCTTGG  498

seq1  GGACTGCAGGAGGACATATTCCTGTCAGGCTTCTATGTGATGACTCTCAT  550
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  GGACTGCATGAGGACATATTCCTGTCAGGCTTCTATGTAATGACTCTCAT  548

seq1  GGTCCTGACAATGCTGTGGCTTGGGGTGCCTGGGAAATCTGTGTGGAAGT  600
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGTCCTGACAATGCTGTGGCTTGCGGTGCCTGGGAAATCTGTGTGGAAGT  598

seq1  AGGTGGTAAACATGCCTCACTGCCCCTGATCATGGGGTGCCTCATGATTT  650
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGTGGTAAACATGCCTCACTGCCCCTGATCATGGGGTGACTCATGATTT  648

seq1  GGTGGATGGTGGGCCTCCTGCTGGGATTGATCATCAGCAGTTCAATGATG  700
      ||||||||| ||||||||||||||||||||||||| ||||| | ||||||
seq2  GGTGGATGGAGGGCCTCCTGCTGGGATTGATCATCTGCAGTACGATGATG  698

seq1  ACATTGAGAATATCAATGGAAACATGGGAAGGGATGCTGAAGTTTGCAGA  750
      |||||||||||||| |||||||| ||||||||||||||||| || |||||
seq2  ACATTGAGAATATCTATGGAAACCTGGGAAGGGATGCTGAACTTCGCAGA  748

seq1  GATGATCTCCTGCTTTAAGTCCACAAAATACCTGCCTTGGAAAGGCAAGT  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GATGATCTCCTGCTTTAAGTCCACCAAATACCTGCCTTGGAAAGGCAAGT  798

seq1  TCCCAGATACCATGAGGAACAGGAGGACCCCTAAACTCCAGATATCTACA  850
      ||||||||||||||||||||| |||||||||| |||||||||||||| ||
seq2  TCCCAGATACCATGAGGAACA-GAGGACCCCT-AACTCCAGATATCTTCA  846

seq1  GGGGGGCCCTCATATT-TCTCTGCTTGCAAGAGTTCCGGGGCACAGTAGG  899
      || || ||||| |||| |||| |||||| | | |||||||||||||||||
seq2  GGCGGCCCCTCTTATTATCTCCGCTTGC-ATACTTCCGGGGCACAGTAGG  895

seq1  GCAGCGTGCCACA-GAAACCTGCCAGCTTTTG-TCCAGGAATCACTTCAG  947
      |||||| || | | |||||||||| |||| || | | |||||||| ||| 
seq2  GCAGCGAGCTATAGGAAACCTGCCTGCTTCTGATGCTGGAATCACATCAA  945

seq1  CAGCCAAGCCAA  959
      ||||||||||||
seq2  CAGCCAAGCCAA  957

seq1: chr7_23654750_23655884
seq2: B6Ng01-216H13.g_63_1217 (reverse)

seq1  CCAAAGACACCA-TGCAG-ACAAATGTGCC--TACGCCCCAG-ATGACTG  45
      |||||| ||||| ||||| |||||||||||   ||||||||| |||||||
seq2  CCAAAG-CACCATTGCAGCACAAATGTGCCCTAACGCCCCAGAATGACTG  49

seq1  AATAATAAA--CTC-TCTG-AAGGATGTCATGTCCCAGTGCCCTATTATT  91
       ||||||||  ||| |||| ||| |||||| || ||||| ||||||||||
seq2  -ATAATAAAACCTCTTCTGAAAGAATGTCAAGTGCCAGT-CCCTATTATT  97

seq1  TTATG-AGCC-TGGAAACT-AGGACTTTGTTGTGTTATATTTACAGCATC  138
      | ||| |||| |||||||| || |||||||||||||||||||||||||||
seq2  TAATGAAGCCTTGGAAACTAAGAACTTTGTTGTGTTATATTTACAGCATC  147

seq1  -GCA-TGGAGAATAAGAAACC-ATTCTG-AATTTCATTACATTCTTTCTC  184
       ||| || ||||||  ||||| |||||| ||||||| |||||||||||||
seq2  GGCATTGAAGAATAGAAAACCAATTCTGAAATTTCAATACATTCTTTCTC  197

seq1  AGGCAAAGAGTGACACAGAGAAG-TTCCTCAATTTAGGCACTAGG-AAAT  232
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  AGGCAAAGAGTGACACAGAGAAGTTTCCTCAATTTAGGCACTAGGAAAAT  247

seq1  ATGCTTCTATAGGAGCTGTGCT-CTGTAGCTGGCCTT--CAGATGAGCAT  279
      |||||||||||||||||||||| ||||||||||||||   ||||||||||
seq2  ATGCTTCTATAGGAGCTGTGCTCCTGTAGCTGGCCTTTCAAGATGAGCAT  297

seq1  CTTCATCCTGACTGAGTCTCAGAAGGTGGGATTCTTCCAA-CCATAGACT  328
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  CTTCATCCTGACTGAGTCTCAGAAGGTGGGATTCTTTCAACCCATAGACT  347

seq1  TCTACTTAAAATTCTTTCCTCTTTTCTTCAGTGAAAATTGTCTTCTGAAG  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTAAAATTCTTTCCTCTTTTCTTCAGTGAAAATTGTCTTCTGAAG  397

seq1  -CCAACATGAAACATTATTTCTTTCTGAAGTCTGCAGGTTAACTTGAATA  427
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACATGAAACATTATTTCTTTCTGAAGTCTGCAGGTTAACTTGAATA  447

seq1  GGTTAATATTTTGCTTTCATGTCAAAGAAATGTCTGTGTCCTAGATTAGT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATATTTTGCTTTCATGTCAAAGAAATGTCTGTGTCCTAGATTAGT  497

seq1  ACTCAGGAGAAAACAGCATTTCGTGTAACATATGCATGTGAGATAATGAA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAGAAAACAGCATTTCGTGTAACATATGCATGTGAGATAATGAA  547

seq1  TTATACCTGGTGGATGGAGGCCCTCCTGCTCCTATAGAAAACATATAAAT  577
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  TTATACCTGGTGGATGGAGGCCCTCTTGCTCTTATAGAAAACATATAAAT  597

seq1  AAGTAAAGTGCAGACTAAGCATCAGCTTGCAAAGGGTATTGGGATTATAT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGTGCAGACTAAGCATCAGCTTGCAAAGGGTATTGGGATTATAT  647

seq1  TATATTGTATTGTATTATATTATATTACTGCAAAGGGATTGTGTTAATAA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTATTGTATTATATTATATTACTGCAAAGGGATTGTGTTAATAA  697

seq1  TTTTGGAGGGAATCTGCAGATGATGCAGGTAAGATTCTGGCACCTCACAT  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGGGAATCTGCAGATGATGCAGGTAAGATTCTGGCACCTCACAT  747

seq1  TTTAGAACAAAAACTATGATCAGTAAAATTATGAATAAATGGAACTTGTT  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACAAAAACTATGATCAGTAAAATTATGAATAAATGGAACTTGTT  797

seq1  AGCAAGTGGTTTTTTTTCATATGGAGGACACATATGTAAGCCTATGTTCA  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGGTTTTTTTTCATATGGAGGACACATATGTAAGCCTATGTTCA  847

seq1  TCTGTGTGATTACAACACAGGTGGCTTTATCAGAAATATTTGGTGTTTTT  877
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGTGATTACAACACAGGTGGCTTTATCAGAAATATTTGGTGTTTTT  897

seq1  TTAAAATTTTTTAGGATGAGTAGTATAAAATTTTCTCAAAAGACAACAAC  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTTTTAGGATGAGTAGTATAAAATTTTCTCAAAAGACAACAAC  947

seq1  TCAATTTTCTACAACTGAATTCGGTTACACAACTTCATTGTTGTGTGCAA  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTCTACAACTGAATTCGGTTACACAACTTCATTGTTGTGTGCAA  997

seq1  TATTATATTATCCCATACATAATATTTTTAATATGTTACTATAACATAAG  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATTATCCCATACATAATATTTTTAATATGTTACTATAACATAAG  1047

seq1  GAAATTCAGTTAATTATTTTTATGTTGCATTTATATATTCTTTTATTTGT  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCAGTTAATTATTTTTATGTTGCATTTATATATTCTTTTATTTGT  1097

seq1  TATTGATTTAGTTACATCCCAATTGAAGCCTCTCCTTCCTCCTAATTGTA  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTTAGTTACATCCCAATTGAAGCCTCTCCTTCCTCCTAATTGTA  1147

seq1  TGGAATTC  1135
      ||||||||
seq2  TGGAATTC  1155