BAC Information

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BAC

Clone NameB6Ng01-216K19
Chromosome7 (Build37)
Map Location 7,629,731 - 7,741,111
singlet/doubletdoublet
Overlap geneLOC100042636, LOC665485, EG625353
Upstream geneZim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368
Downstream geneVmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216K19.bB6Ng01-216K19.g
ACCGA033305GA033306
length1,128250
definitionB6Ng01-216K19.b B6Ng01-216K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,739,983 - 7,741,111)(7,629,731 - 7,630,019)
sequence
gaattcttgagtagctattatacttcttgtcccagtagaggacagagtct
caatgtgtcacagggaataaattcataaaatagtcagtgatctcagaaaa
cagtgagtgtagggttttgtagttataaaatagacccaaccacattgtgg
tttatgaatgtatcttctctgaattaaataatctacttgatatcaacata
gaaccaaaaaaatggcttaggacatttttgctttctgataacattatttt
ttatttgacatttcatattccattccccacgcccccatacaccctccaat
actttacattccacacctcctccccaccacaactgtcttcatgttgatcc
ccccatcctccccccccacctgacctctaaactccctgtggcctccaggc
ttttgagtgttaggtgcatcatttctgtatgatcacagacattgtattcc
tctacagtatatgaattgtgggacccatatcagctggtgtatgctgtcag
tttgatgctccagtgtttgagagatctctgggttccagattaatttagag
tgcttgtctctctgcaagatcgcctttccactgagctgctttcagtcttc
cctaattaaggggatagttgcttctgtccattggttgggtgcaaataact
atttaggaggacagtcatgatagatcctttttgtgagtgctccagagcct
cagtgaaatgtgaggccataggacttcctcttgacctagatcctactatg
ggcctgtcattggaccttcttttcctcaggctcctctccatttcatcctt
gcactcagacaggaataattatgggtcagagatgtgactatgggatggga
accccatcactcacttgatgtcctgtcatcccgctggaggtgggctctgt
acattccctctatctactgtagtacatttcatctagggtctctgacctcc
caagtcctctggtgcattttggtgggtccacccacccttcctttacctga
ggttaccgtttatatctttttgctggtcctcaggcttggtctcttgtcac
cccacaccactcccccaacccctttctaataacatcaataaatgatacaa
aaagttacctagactaagaaaaaattgc
tttctatatttttgatattgttgaaagggtcttaaacttttccatcaaag
atcagagtatatttccaccacccatcattccttcattttctttctttctt
cttttctttcctttcctttcctttcctttcctttcctttcctttcctttc
ctttcctttcccttttccttttccttttccttttccttttccttttcctt
ttccttttccttttccttttccttttcctcccctcccctcccctcccctc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7739983_7741111
seq2: B6Ng01-216K19.b_42_1169 (reverse)

seq1  GCAATTTTTTCTTAGTCTAGTTAACTTTTTGTATCATTTA-TGATGTTAT  49
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GCAATTTTTTCTTAGTCTAGGTAACTTTTTGTATCATTTATTGATGTTAT  50

seq1  TAGAAAGGGGTTTGTGGAGT-GTGT-GGGTGACAGGAGAACCAAGCCCTG  97
      |||||||||||| | ||||| |||| |||||||| ||| |||||| ||||
seq2  TAGAAAGGGGTTGGGGGAGTGGTGTGGGGTGACAAGAG-ACCAAG-CCTG  98

seq1  AGGACCAGCAAAAAGAATATAAACAGGTAACCTCAGGTAAAAGGAGGGTG  147
      ||||||||||||||| |||||||| |||||||||||||||| | ||||||
seq2  AGGACCAGCAAAAAG-ATATAAAC-GGTAACCTCAGGTAAAGGAAGGGTG  146

seq1  GGTGGACCCACCAAAATGCACCAGA-GACTTGGGAGGTCAGAGACCCTAG  196
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTGGACCCACCAAAATGCACCAGAGGACTTGGGAGGTCAGAGACCCTAG  196

seq1  ATGAAATGTACTACAGTAGATAGAGGGAATGTACAGAGCCCACCTCCAGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGTACTACAGTAGATAGAGGGAATGTACAGAGCCCACCTCCAGC  246

seq1  GGGATGACAGGACATCAAGTGAGTGATGGGGTTCCCATCCCATAGTCACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGACAGGACATCAAGTGAGTGATGGGGTTCCCATCCCATAGTCACA  296

seq1  TCTCTGACCCATAATTATTCCTGTCTGAATGCAAGGATGAAATGGAGAGG  346
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTCTGACCCATAATTATTCCTGTCTGAGTGCAAGGATGAAATGGAGAGG  346

seq1  AGCCTGAGGAAAAGAAGGTCCAATGACAGGCCCATAGTAGGATCTAGGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGGAAAAGAAGGTCCAATGACAGGCCCATAGTAGGATCTAGGTC  396

seq1  AAGAGGAAGTCCTATGGCCTCACATTTCACTGAGGCTCTGGAGCACTCAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGTCCTATGGCCTCACATTTCACTGAGGCTCTGGAGCACTCAC  446

seq1  AAAAAGGATCTATCATGACTGTCCTCCTAAATAGTTATTTGCACCCAACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGATCTATCATGACTGTCCTCCTAAATAGTTATTTGCACCCAACC  496

seq1  AATGGACAGAAGCAACTATCCCCTTAATTAGGGAAGACTGAAAGCAGCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAGAAGCAACTATCCCCTTAATTAGGGAAGACTGAAAGCAGCTC  546

seq1  AGTGGAAAGGCGATCTTGCAGAGAGACAAGCACTCTAAATTAATCTGGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTGGAAAGGCGATCTTGCAGAGAGACAAGCACTCTAAATTAATCTGGAA  596

seq1  CCCAGAGATCTCTCAAACACTGGAGCATCAAACTGACAGCATACACCAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGATCTCTCAAACACTGGAGCATCAAACTGACAGCATACACCAGC  646

seq1  TGATATGGGTCCCACAATTCATATACTGTAGAGGAATACAATGTCTGTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGGGTCCCACAATTCATATACTGTAGAGGAATACAATGTCTGTGA  696

seq1  TCATACAGAAATGATGCACCTAACACTCAAAAGCCTGGAGGCCACAGGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAGAAATGATGCACCTAACACTCAAAAGCCTGGAGGCCACAGGGA  746

seq1  GTTTAGAGGTCAGGTGGGGGGGGGAGGATGGGGGGATCAACATGAAGACA  796
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTTAGAGGTCAGGT-GGGGGGGGAGGATGGGGGGATCAACATGAAGACA  795

seq1  GTTGTGGTGGGGAGGAGGTGTGGAATGTAAAGTATTGGAGGGTGTATGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTGGGGAGGAGGTGTGGAATGTAAAGTATTGGAGGGTGTATGGG  845

seq1  GGCGTGGGGAATGGAATATGAAATGTCAAATAAAAAATAATGTTATCAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGGGAATGGAATATGAAATGTCAAATAAAAAATAATGTTATCAGA  895

seq1  AAGCAAAAATGTCCTAAGCCATTTTTTTGGTTCTATGTTGATATCAAGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAATGTCCTAAGCCATTTTTTTGGTTCTATGTTGATATCAAGTA  945

seq1  GATTATTTAATTCAGAGAAGATACATTCATAAACCACAATGTGGTTGGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTAATTCAGAGAAGATACATTCATAAACCACAATGTGGTTGGGT  995

seq1  CTATTTTATAACTACAAAACCCTACACTCACTGTTTTCTGAGATCACTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTATAACTACAAAACCCTACACTCACTGTTTTCTGAGATCACTGA  1045

seq1  CTATTTTATGAATTTATTCCCTGTGACACATTGAGACTCTGTCCTCTACT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTATGAATTTATTCCCTGTGACACATTGAGACTCTGTCCTCTACT  1095

seq1  GGGACAAGAAGTATAATAGCTACTCAAGAATTC  1129
      |||||||||||||||||||||||||||||||||
seq2  GGGACAAGAAGTATAATAGCTACTCAAGAATTC  1128

seq1: chr7_7629731_7630019
seq2: B6Ng01-216K19.g_75_324

seq1  TTTCTATATTTTTGATATTGTTGAAAGGGTCTTAAACTTTTCCATCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATTTTTGATATTGTTGAAAGGGTCTTAAACTTTTCCATCAAAG  50

seq1  ATCAGAGTATATTTCCACCACCCATCATTCCTTCATTTTCTTTCTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTATATTTCCACCACCCATCATTCCTTCATTTTCTTTCTTTCTT  100

seq1  CTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTC  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTC  150

seq1  CTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTT  200

seq1  TTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTT  250
      |||||||||||||||||||||||||                         
seq2  TTCCTTTTCCTTTTCCTTTTCCTTT-------------------------  225

seq1  CCTCTCCTCTCCTCTCCTCCCCTCCCCTCCCCTCCCCTC  289
                    |||||||||||||||||||||||||
seq2  --------------TCCTCCCCTCCCCTCCCCTCCCCTC  250