BAC Information

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BAC

Clone NameB6Ng01-216P22
Chromosome7 (Build37)13 (Build37)
Map Location 22,088,227 - 22,088,881106,658,265 - 106,658,540
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262, EG667259, LOC100043574, LOC100043576, Gm1447, LOC100043006, LOC100043583, EG435953, LOC673902, EG667240, EG435951, Gm1446, LOC381937, LOC100043588, LOC670764, EG667215, LOC100043013
Downstream geneLOC621561, EG667199, EG621510, LOC667186, EG628475, LOC100043595, LOC100043596, LOC667358, LOC100043016, LOC100043602, LOC100043604, EG667378, LOC100043607, LOC100043019, LOC100043025, EG667404, EG435940, LOC100043026, EG545929, LOC667421, LOC100043614, LOC667431, LOC100043029, EG620736, EG667444, LOC100043033, LOC100043037, EG667464, EG667469, EG667472, EG667094, LOC100043625, LOC100043626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216P22.bB6Ng01-216P22.g
ACCGA033533GA033534
length655295
definitionB6Ng01-216P22.b B6Ng01-216P22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,088,227 - 22,088,881)(106,658,265 - 106,658,540)
sequence
gaattctcacccgagtaataccgaaagactgagaaatacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggta
agaaggacacatgctccactattttcatagcagccttatttatttattta
tttatttatttattattctttagttccacaattattacttttttttatta
ttaggtattttcctcgtttacattttcattcctaacccaaaggtccccca
tacccacccccccaatcccctacccacccactccccctttttggccctgg
cgttcccctgtactggggcatataaagtttgcatgtccaatgggcctctc
tttccagtgatggccgactaggccatcttttgatacatatgcagctagag
tcaagagctccggggtactggttagttcataatgttgttccacctagggg
gctgcagatccctttacctccttgagtactttctctagctcctccagtgg
gagtcctgtgattcatccattagatgactgtgatcatccacttctgtgtt
tgcta
tgactgagctgaatactcccttagtgtgtgacctaatatttgtttacaac
atcttgtaacatatatataaatgcttacatatgcagcatgtgcatatata
tgtacacatatgtgcctccatatgtatgtatgtatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatacagtgtgtgtgtgtatgtatat
atgtgtatatataacacacacacacacacacacacacacacacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_22088227_22088881
seq2: B6Ng01-216P22.b_47_701

seq1  GAATTCTCACCCGAGTAATACCGAAAGACTGAGAAATACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCCGAGTAATACCGAAAGACTGAGAAATACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150

seq1  AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTA  200

seq1  AGAAGGACACATGCTCCACTATTTTCATAGCAGCCTTATTTATTTATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGACACATGCTCCACTATTTTCATAGCAGCCTTATTTATTTATTTA  250

seq1  TTTATTTATTTATTATTCTTTAGTTCCACAATTATTACTTTTTTTTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTATTCTTTAGTTCCACAATTATTACTTTTTTTTATTA  300

seq1  TTAGGTATTTTCCTCGTTTACATTTTCATTCCTAACCCAAAGGTCCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTATTTTCCTCGTTTACATTTTCATTCCTAACCCAAAGGTCCCCCA  350

seq1  TACCCACCCCCCCAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACCCCCCCAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGG  400

seq1  CGTTGCCCTGTACTGGGGCATATAAAGTTTGGAAGTCCAATGGGTCTCTC  450
      |||| |||||||||||||||||||||||||| | |||||||||| |||||
seq2  CGTTCCCCTGTACTGGGGCATATAAAGTTTGCATGTCCAATGGGCCTCTC  450

seq1  TTTGCGGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAG  500
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAG  500

seq1  TTAAGAGCTCTGGGGTACTGGTTAATTCATAATGTTGTTCCACCTATAGG  550
      | |||||||| ||||||||||||| |||||||||||||||||||||  ||
seq2  TCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTAGGGG  550

seq1  GTTGCAGATCCCTTTAGCTCCTTGAGTACTTTCTCTAGCTCCTCCATTGG  600
      | |||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  GCTGCAGATCCCTTTACCTCCTTGAGTACTTTCTCTAGCTCCTCCAGTGG  600

seq1  GGGCCCTGTGATCCATCCAATAGCTGACTGTGATCATCCACTTCTGTGTT  650
      | | |||||||| |||||| ||| ||||||||||||||||||||||||||
seq2  GAGTCCTGTGATTCATCCATTAGATGACTGTGATCATCCACTTCTGTGTT  650

seq1  TGCTA  655
      |||||
seq2  TGCTA  655

seq1: chr13_106658265_106658540
seq2: B6Ng01-216P22.g_164_365

seq1  ATATATATATATGTATATACATGTATATATATATATATATATATATATAT  50
          ||||||||||| | | ||||   |  |||| ||| ||| |||||||
seq2  ----ATATATATGTACACATATGTGCCTCCATATGTATGTATGTATATAT  46

seq1  ATATATATACATGTATATATATATATACATATATACATATGAGTGTGTGT  100
      ||||||||| || |||||||||||||| ||||||| ||||          
seq2  ATATATATATATATATATATATATATATATATATATATAT----------  86

seq1  GTACATACATGAATATACAATTGTTTCACAATATTTATGTGTGTGTATAT  150
                  ||||              |||| ||| | | | |||||
seq2  ------------ATAT--------------ATATATATATATATATATAT  110

seq1  ACATATGTATGTATGTATATACATACATATGTATATATGTATGTGTATAT  200
      | |||| ||| ||| |||||| |||||        | ||| ||||||| |
seq2  ATATATATATATATATATATATATACA-------GTGTGTGTGTGTATGT  153

seq1  ATACACATACACACACATGTATATATATATATACACACACACACACACAC  250
      ||            | |||| ||||||||   ||||||||||||||||||
seq2  AT------------ATATGTGTATATATA---ACACACACACACACACAC  188

seq1  ACACACACACACACACACACACACAG  276
      |||||||||||||             
seq2  ACACACACACACAG------------  202