BAC Information

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BAC

Clone NameB6Ng01-217K20
Chromosome7 (Build37)
Map Location 9,160,845 - 9,260,819
singlet/doubletdoublet
Overlap geneEG545909, LOC100042039, LOC100042781
Upstream geneLOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145
Downstream geneLOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217K20.bB6Ng01-217K20.g
ACCGA034015GA034016
length1,1731,040
definitionB6Ng01-217K20.b B6Ng01-217K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,160,845 - 9,162,038)(9,259,784 - 9,260,819)
sequence
gaattcttgagtagctcttatacttcttgtcccagtagaggacagagact
caatgtgtcacagggaataaattcataaaatagtcagtgatctcagaaaa
cagtaagtgtagtgttttgtagttataaaatagaccaaacaacattgtgg
tttatgaatgtattttcactgatttaaataatctacttgctatcaacata
gaacaaaaaaatggctaaggacatttttgcgttctataacattatttttt
attttacatttcatattccattccctgcgcccacatacaccatccaatac
ttcacattccacacattctccccaccccaactgtcttcatgttgatcccc
ccatcctcccccacacctgacctctaaattccttatggcctccaggcttt
tgagtgttaagtgcatcatttctgtatgatcaaagacatggtagtcctct
cctgtatatgaattgagggacccatatcaactggtgtatgctctctgttt
gattatccagtgtctgagagatctctggggtccagattaatttagagtgc
tggtctttctgaaagatatcctttcccctgagctgctttaagccttccct
aattcaagggatagttgcttctgaccattgtttgggtgcaaataactatt
taggagggcagtcatgatagatcctttttgtgagtgctccagagcctcag
taaaatgtgaggccataggacctcctcttgacctagatcccactttgggc
ctgtcattggaccttcttttcctcaggctcctctccatttcatccttgca
ttcagacaggaacaattatgggtcagagatgtgactatgggatgggaacc
ccatcactcacttgatgtcttgtcttcccgctggaggtgggctctttaag
ttccctctatctaatgtagtacatttcatctaaggtctgggacatcccaa
gacttctggtgcattttggtgggtcacccaccctcctatactgaggtacc
tgttatatcctttgctggtctcaggcttggttccctgtcacgaaacaact
cacaacccttctaataacatcatagtgataacaaacgtaacttagactag
aaaaaaattgctgaatttcttcctttgattttatgggaactatgattgga
agccatgtctcagcagcattcct
gaattccttttacagtttgacattaatagtttataggtgcttcttcttat
gtttgttcacatgcaaatgtggaataaataatttgtatcagtacttccag
atattctgattatcgaattgacagtttgaattatattttcaaaaataaag
tattctttttactaaacttggaaaaactgtcactcaattgtctatcacta
actcatgcttcattcactactattcaaatgaggtatgaagtaggatttcg
tggtcttttctcctagctcaatttcatatgtctagttaccataatgtgtt
atgaaaattttgttctattttgatggcttagatttgtttaaacttgttgt
attttattattctcccatagaatcctgtcatcttctaatgagtgacataa
agtggatctgatgaaaaaggaaggaaataggcatattaactataatatat
ttgccagtagaacagacaattgttcacatcccaatagaaggaatggaaac
tctaattaggatatattgtgtgagaataacaagttattttcaataaataa
aacaatcaaaatttaaaaaaaactccctgttctcagagaatgatctttcc
tttgtgtgttgtattcttttggtaggtgtttttgtcaagaattattccac
acatatccatcaaatgtattgtttttgaatgacctttttccctcttatta
aacattatgctgtttttatccattttttaataaagaaattttctcctctt
gtatatgaatgtgttttcatttccttgcctgcctctgcaggcaacttagg
aatgtcttaaaaaataaaccagttttttttttttttttgtctttgatttc
attttagagaatgtgaacacaaaagttcaattatactgaaaattacttgg
tggcttttgtctggttgctggtattgctgtactgagggtgtggtcaatag
cctttatttttctgtggtctagtgctgtctatagggtccctttgacttct
tgtcatctatgtaaagaggtggagtggaattcttcaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9160845_9162038
seq2: B6Ng01-217K20.b_50_1222

seq1  GAATTCTTGAGTAGCTCTTATACTTCTTGTCCCAGTAGAGGACAGAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGTAGCTCTTATACTTCTTGTCCCAGTAGAGGACAGAGACT  50

seq1  CAATGTGTCACAGGGAATAAATTCATAAAATAGTCAGTGATCTCAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGTCACAGGGAATAAATTCATAAAATAGTCAGTGATCTCAGAAAA  100

seq1  CAGTAAGTGTAGTGTTTTGTAGTTATAAAATAGACCAAACAACATTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGTGTAGTGTTTTGTAGTTATAAAATAGACCAAACAACATTGTGG  150

seq1  TTTATGAATGTATTTTCACTGATTTAAATAATCTACTTGCTATCAACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAATGTATTTTCACTGATTTAAATAATCTACTTGCTATCAACATA  200

seq1  GAACAAAAAAATGGCTAAGGACATTTTTGCGTTCTATAACATTATTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAAAAATGGCTAAGGACATTTTTGCGTTCTATAACATTATTTTTT  250

seq1  ATTTTACATTTCATATTCCATTCCCTGCGCCCACATACACCATCCAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACATTTCATATTCCATTCCCTGCGCCCACATACACCATCCAATAC  300

seq1  TTCACATTCCACACATTCTCCCCACCCCAACTGTCTTCATGTTGATCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTCCACACATTCTCCCCACCCCAACTGTCTTCATGTTGATCCCC  350

seq1  CCATCCTCCCCCACACCTGACCTCTAAATTCCTTATGGCCTCCAGGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCCCCCACACCTGACCTCTAAATTCCTTATGGCCTCCAGGCTTT  400

seq1  TGAGTGTTAAGTGCATCATTTCTGTATGATCAAAGACATGGTAGTCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTAAGTGCATCATTTCTGTATGATCAAAGACATGGTAGTCCTCT  450

seq1  CCTGTATATGAATTGAGGGACCCATATCAACTGGTGTATGCTCTCTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATATGAATTGAGGGACCCATATCAACTGGTGTATGCTCTCTGTTT  500

seq1  GATTATCCAGTGTCTGAGAGATCTCTGGGGTCCAGATTAATTTAGAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCCAGTGTCTGAGAGATCTCTGGGGTCCAGATTAATTTAGAGTGC  550

seq1  TGGTCTTTCTGAAAGATATCCTTTCCCCTGAGCTGCTTTAAGCCTTCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTCTGAAAGATATCCTTTCCCCTGAGCTGCTTTAAGCCTTCCCT  600

seq1  AATTCAAGGGATAGTTGCTTCTGACCATTGTTTGGGTGCAAATAACTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGGGATAGTTGCTTCTGACCATTGTTTGGGTGCAAATAACTATT  650

seq1  TAGGAGGGCAGTCATGATAGATCCTTTTTGTGAGTGCTCCAGAGCCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGGCAGTCATGATAGATCCTTTTTGTGAGTGCTCCAGAGCCTCAG  700

seq1  TAAAATGTGAGGCCATAGGACCTCCTCTTGACCTAGATCCCACTTTGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTGAGGCCATAGGACCTCCTCTTGACCTAGATCCCACTTTGGGC  750

seq1  CTGTCATTGGACCTTCTTTTCCTCAGGCTCCTCTCCATTTCATCCTTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTGGACCTTCTTTTCCTCAGGCTCCTCTCCATTTCATCCTTGCA  800

seq1  TTCAGACAGGAACAATTATGGGTCAGAGATGTGACTATGGGATGGGAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACAGGAACAATTATGGGTCAGAGATGTGACTATGGGATGGGAACC  850

seq1  CCATCACTCACTTGATGTCTTGTCTTCCCGCTGGAGGTGGGCTCTTTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTCACTTGATGTCTTGTCTTCCCGCTGGAGGTGGGCTCTTTAAG  900

seq1  TTCCCTCTATCTAATGTAGTACATTTCATCTAAGGTCTGGGACATCCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTATCTAATGTAGTACATTTCATCTAAGGTCTGGGACATCCCAA  950

seq1  GAC-TCTGGTGCATTTTGGTGGGTCCACCCACCCTCCTATTACTTGAGGT  999
      ||| |||||||||||||||||||| |||||||||||||| ||| ||||| 
seq2  GACTTCTGGTGCATTTTGGTGGGT-CACCCACCCTCCTA-TAC-TGAGG-  996

seq1  TACCTGTTTATATTCCTTTTGCTGGTCCTCAGGGCTTGGTTCCCCTGTCA  1049
      |||||| ||||||  | ||||||||| |||| ||||||||| ||||||||
seq2  TACCTG-TTATAT--CCTTTGCTGGT-CTCA-GGCTTGGTT-CCCTGTCA  1040

seq1  CCGACACACTCCACAAACCCCTTTCTAATAACATCATAAGTGATACAAAA  1099
       ||| |||   |||||   || ||||||||||||||| |||||||  |||
seq2  -CGAAACAACTCACAA---CCCTTCTAATAACATCAT-AGTGATAACAAA  1085

seq1  CGTTAACTAGACTAAGAAAAAAATTGCTTGGTTTTCTTTCCTTTAAATTT  1149
      ||| |  |||||| ||||||||||||| ||  |||| ||||||| |  ||
seq2  CGTAACTTAGACT-AGAAAAAAATTGC-TGAATTTC-TTCCTTTGA--TT  1130

seq1  TTATGGACATTATGAATTGAAAGCAATG-CTCAGCAGCAATTTCCT  1194
      ||||||  | |||| |||| |||| ||| ||||||||||  |||||
seq2  TTATGGGAACTATG-ATTGGAAGCCATGTCTCAGCAGCA--TTCCT  1173

seq1: chr7_9259784_9260819
seq2: B6Ng01-217K20.g_66_1105 (reverse)

seq1  AATTTGAAGAA-TCCACT-CACTCTTTTACATAAGATGACAAGAAGGTCA  48
      ||||||||||| |||||| |||   ||||||| |||||||||||| ||||
seq2  AATTTGAAGAATTCCACTCCACCTCTTTACAT-AGATGACAAGAA-GTCA  48

seq1  AA-GGAACCTATAGACAGCACTAGAACAACAGAAAAATAAAGGCTATTGA  97
      || ||| ||||||||||||||||| || ||||||||||||||||||||||
seq2  AAGGGACCCTATAGACAGCACTAG-ACCACAGAAAAATAAAGGCTATTGA  97

seq1  -CACACCTCAAGTACAGCAATAACAGCAACCAGACAAAAG-CAACAAGTA  145
       ||||||   |||||||||||| ||||||||||||||||| || ||||||
seq2  CCACACCCTCAGTACAGCAATACCAGCAACCAGACAAAAGCCACCAAGTA  147

seq1  ATTTTCAGTTATAATTGAACTTTTGTGTTCACATTCTCT-AAATGAAATC  194
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTTCAG-TATAATTGAACTTTTGTGTTCACATTCTCTAAAATGAAATC  196

seq1  AAAGAC--AAAAAAAAAAAAAACTGGTTTATTTTTTAAGACATTCCTAAG  242
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAAAAAAAAAAAAAAACTGGTTTATTTTTTAAGACATTCCTAAG  246

seq1  TTGCCTGCAGAGGCAGGCAAGGAAATGAAAACACATTCATATACAAGAGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGCAGAGGCAGGCAAGGAAATGAAAACACATTCATATACAAGAGG  296

seq1  AGAAAATTTCTTTATTAAAAAATGGATAAAAACAGCATAATGTTTAATAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTTCTTTATTAAAAAATGGATAAAAACAGCATAATGTTTAATAA  346

seq1  GAGGGAAAAAGGTCATTCAAAAACAATACATTTGATGGATATGTGTGGAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAAAGGTCATTCAAAAACAATACATTTGATGGATATGTGTGGAA  396

seq1  TAATTCTTGACAAAAACACCTACCAAAAGAATACAACACACAAAGGAAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTGACAAAAACACCTACCAAAAGAATACAACACACAAAGGAAAG  446

seq1  ATCATTCTCTGAGAACAGGGAGTTTTTTTTAAATTTTGATTGTTTTATTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTCTGAGAACAGGGAGTTTTTTTTAAATTTTGATTGTTTTATTT  496

seq1  ATTGAAAATAACTTGTTATTCTCACACAATATATCCTAATTAGAGTTTCC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAATAACTTGTTATTCTCACACAATATATCCTAATTAGAGTTTCC  546

seq1  ATTCCTTCTATTGGGATGTGAACAATTGTCTGTTCTACTGGCAAATATAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCTATTGGGATGTGAACAATTGTCTGTTCTACTGGCAAATATAT  596

seq1  TATAGTTAATATGCCTATTTCCTTCCTTTTTCATCAGATCCACTTTATGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTAATATGCCTATTTCCTTCCTTTTTCATCAGATCCACTTTATGT  646

seq1  CACTCATTAGAAGATGACAGGATTCTATGGGAGAATAATAAAATACAACA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTAGAAGATGACAGGATTCTATGGGAGAATAATAAAATACAACA  696

seq1  AGTTTAAACAAATCTAAGCCATCAAAATAGAACAAAATTTTCATAACACA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAACAAATCTAAGCCATCAAAATAGAACAAAATTTTCATAACACA  746

seq1  TTATGGTAACTAGACATATGAAATTGAGCTAGGAGAAAAGACCACGAAAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTAACTAGACATATGAAATTGAGCTAGGAGAAAAGACCACGAAAT  796

seq1  CCTACTTCATACCTCATTTGAATAGTAGTGAATGAAGCATGAGTTAGTGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTCATACCTCATTTGAATAGTAGTGAATGAAGCATGAGTTAGTGA  846

seq1  TAGACAATTGAGTGACAGTTTTTCCAAGTTTAGTAAAAAGAATACTTTAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATTGAGTGACAGTTTTTCCAAGTTTAGTAAAAAGAATACTTTAT  896

seq1  TTTTGAAAATATAATTCAAACTGTCAATTCGATAATCAGAATATCTGGAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAATATAATTCAAACTGTCAATTCGATAATCAGAATATCTGGAA  946

seq1  GTACTGATACAAATTATTTATTCCACATTTGCATGTGAACAAACATAAGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGATACAAATTATTTATTCCACATTTGCATGTGAACAAACATAAGA  996

seq1  AGAAGCACCTATAAACTATTAATGTCAAACTGTAAAAGGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACCTATAAACTATTAATGTCAAACTGTAAAAGGAATTC  1040