BAC Information

Click to search

BAC

Clone NameB6Ng01-218J03
Chromosome7 (Build37)
Map Location 78,838,783 - 79,024,569
singlet/doubletdoublet
Overlap geneLOC665535
Upstream genenone
Downstream geneMctp2, LOC100042873, LOC100042880, LOC233391, LOC665570, LOC100042029
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218J03.bB6Ng01-218J03.g
ACCGA034662GA034663
length1,162972
definitionB6Ng01-218J03.b B6Ng01-218J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,023,407 - 79,024,569)(78,838,783 - 78,839,752)
sequence
gaattcacatcaagaaagaaattcatacaacgtcccagaagagaaagaaa
tactcatacacaagaccaaggccaggtgagcacgaagtctggatcttctt
tcttcatttgcaaatatgccatgaaactcatgcctatacttgtagcaatt
gtgaggaacaagcatgagaaccactgcaaggtcaaggtttgtacaggcta
catggtaagatcctgtctcaaaaacaaaaagaaatatcctgagtattttt
caaagttaacacatattctcagatatcataattgtgatacctgcaccgta
tttcatggtgtaactatccccttgaatcttttgttattgttatattttaa
tgctattacatattgttttacttttcctcttttgtacaatgttcaaaact
ccatgatgaattcaattcattgtataaattactgcttccccgacactgat
gagattattggtgagatttggatgaaacggatgacaagctaaaatttgtt
tctgaggttatgcctgaaggtctaggtagccatagaacacagagtatcac
ttattcatgtatgccaacacatgttttcaaaaccatgtatatttgaaata
agcctaaatgctagtgacataagtaaaaaaaaaagtctagaaaatgagat
ttgattcacagcagtcaacctcttccttctgaatattaactattaattca
aataaatacacaaacttataattttcaaagtaattattttttcaaagtaa
attttacctcctgagtaaatgtcaaactattttagaatttaaagcaatca
cagatgcattccaaaatatccagggctacacatttttatagtttaaatta
gcttaatttaaattaatttaaaatgttagaagccctctcagaagtgaaca
agctttggaatgcataaatctattatctagtttgtacatagatattttta
gaaactaattaggaaagaaagtaggggccagtctttatggtgttttcatc
tatattaaaaccagaccttctcattctctaactttatagtaagaatgtct
tcttataagcaatggcttaagtacagaaggttttcaataaacatcaaggt
caaccttaatcacatggtctggtgaatgaattttaagatttgttctgctg
tgtctaataggg

gaattcaaagaagggaattctgccctgtggaacacaattaacctgaggat
ttcatacagagaaatggatgccttaagagctcactcatatgtgggggttt
aagagtcaaagaagtagaatggactggagtttgccagaggttagaaaggg
gccatgagcttgtcaaagatctagtttatacaataaattctagaggtcca
ctctaccacattgggcctcaaattcagaatatcttactgtattataaaaa
ttaactagcaatctatatcctagttagatgttctaaccaatggaaagaag
cactgagataatagataatattatgtcactgatcatgatgctaggtttta
taggggtaggtttgcctctaaacctataccataatccatacctttaaatt
taaaaatataatatatctccatatataataatggagatacatataaacca
tttatgagacacaataagcaaacagaacgagagatacaagaaatgagaaa
cctacatgttcaagtatttgtcttagtttgttctctattgctttgataag
aacatcatgataaaggtaaactgggggaaaatattttatttcatttcaca
gcttgtagtgtgtcttgatgggaagctaagtcaggaactctagcaggcag
gaacttggaggtaggaactgaggcaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaccatagagggatgcttcttaactggcttgttttcatagctctctctc
ttcttgcttttattgttgttgctgctgtggctgtggctgttttctgtggc
tgtactgttgctactgttgtttatgtttgttaaaaaattcagggaccacc
ttcccagtaatgttaccacaacagagtgggtttggcttcccatataaact
gtccattcatgaaaaatttccaatgaactttatcttctagggaatctaat
gaatgcatcttcctcagttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_79023407_79024569
seq2: B6Ng01-218J03.b_42_1203 (reverse)

seq1  CCCTATTTAGGACCAGCAG-ACATATCTTTAAAATCATCAACCAGACC-C  48
      ||||| ||||   |||||| ||| ||||| ||| ||||  ||||||||  
seq2  CCCTA-TTAGACACAGCAGAACAAATCTTAAAATTCATTCACCAGACCAT  49

seq1  ATGATTAAGGTTGACC-TGATGTTTATTTTAAAACCTCTGTAACCTTAAG  97
       ||||||||||||||| |||||||||||  ||| | ||||||  ||||||
seq2  GTGATTAAGGTTGACCTTGATGTTTATTGAAAACCTTCTGTA--CTTAAG  97

seq1  -CAATGC-TATAAGAAGACATTCTTACTATAAAGTTAGAGAATGAGAAGG  145
       || ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCTTATAAGAAGACATTCTTACTATAAAGTTAGAGAATGAGAAGG  147

seq1  TCTGGTTTTTAATATTAGATGAAAACAACCATAAAGACTGGCCCCCTACT  195
      ||||| |||||||| ||||||||||| |||||||||||||| ||||||||
seq2  TCTGG-TTTTAATA-TAGATGAAAAC-ACCATAAAGACTGG-CCCCTACT  193

seq1  TTCTTTCCTAATTAGTTTCT-AAAATATCTATGTACAAACTAGATAATAG  244
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTTTCCTAATTAGTTTCTAAAAATATCTATGTACAAACTAGATAATAG  243

seq1  ATTTATGCATTCCAAAGCTTGTTCACTTCTGAGAGGGCTTCTAACATTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCATTCCAAAGCTTGTTCACTTCTGAGAGGGCTTCTAACATTTT  293

seq1  AAATTAATTTAAATTAAGCTAATTTAAACTATAAAAATGTGTAGCCCTGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTTAAATTAAGCTAATTTAAACTATAAAAATGTGTAGCCCTGG  343

seq1  ATATTTTGGAATGCATCTGTGATTGCTTTAAATTCTAAAATAGTTTGACA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGGAATGCATCTGTGATTGCTTTAAATTCTAAAATAGTTTGACA  393

seq1  TTTACTCAGGAGGTAAAATTTACTTTGAAAAAATAATTACTTTGAAAATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCAGGAGGTAAAATTTACTTTGAAAAAATAATTACTTTGAAAATT  443

seq1  ATAAGTTTGTGTATTTATTTGAATTAATAGTTAATATTCAGAAGGAAGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTGTGTATTTATTTGAATTAATAGTTAATATTCAGAAGGAAGAG  493

seq1  GTTGACTGCTGTGAATCAAATCTCATTTTCTAGACTTTTTTTTTTACTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTGCTGTGAATCAAATCTCATTTTCTAGACTTTTTTTTTTACTTA  543

seq1  TGTCACTAGCATTTAGGCTTATTTCAAATATACATGGTTTTGAAAACATG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTAGCATTTAGGCTTATTTCAAATATACATGGTTTTGAAAACATG  593

seq1  TGTTGGCATACATGAATAAGTGATACTCTGTGTTCTATGGCTACCTAGAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCATACATGAATAAGTGATACTCTGTGTTCTATGGCTACCTAGAC  643

seq1  CTTCAGGCATAACCTCAGAAACAAATTTTAGCTTGTCATCCGTTTCATCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGCATAACCTCAGAAACAAATTTTAGCTTGTCATCCGTTTCATCC  693

seq1  AAATCTCACCAATAATCTCATCAGTGTCGGGGAAGCAGTAATTTATACAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCACCAATAATCTCATCAGTGTCGGGGAAGCAGTAATTTATACAA  743

seq1  TGAATTGAATTCATCATGGAGTTTTGAACATTGTACAAAAGAGGAAAAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGAATTCATCATGGAGTTTTGAACATTGTACAAAAGAGGAAAAGT  793

seq1  AAAACAATATGTAATAGCATTAAAATATAACAATAACAAAAGATTCAAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATATGTAATAGCATTAAAATATAACAATAACAAAAGATTCAAGG  843

seq1  GGATAGTTACACCATGAAATACGGTGCAGGTATCACAATTATGATATCTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTTACACCATGAAATACGGTGCAGGTATCACAATTATGATATCTG  893

seq1  AGAATATGTGTTAACTTTGAAAAATACTCAGGATATTTCTTTTTGTTTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATGTGTTAACTTTGAAAAATACTCAGGATATTTCTTTTTGTTTTT  943

seq1  GAGACAGGATCTTACCATGTAGCCTGTACAAACCTTGACCTTGCAGTGGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGATCTTACCATGTAGCCTGTACAAACCTTGACCTTGCAGTGGT  993

seq1  TCTCATGCTTGTTCCTCACAATTGCTACAAGTATAGGCATGAGTTTCATG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGCTTGTTCCTCACAATTGCTACAAGTATAGGCATGAGTTTCATG  1043

seq1  GCATATTTGCAAATGAAGAAAGAAGATCCAGACTTCGTGCTCACCTGGCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTGCAAATGAAGAAAGAAGATCCAGACTTCGTGCTCACCTGGCC  1093

seq1  TTGGTCTTGTGTATGAGTATTTCTTTCTCTTCTGGGACGTTGTATGAATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTGTGTATGAGTATTTCTTTCTCTTCTGGGACGTTGTATGAATT  1143

seq1  TCTTTCTTGATGTGAATTC  1163
      |||||||||||||||||||
seq2  TCTTTCTTGATGTGAATTC  1162


seq1: chr7_78838783_78839752
seq2: B6Ng01-218J03.g_68_1039

seq1  GAATTCAAAGAAGGGAATTCTGCCCTGTGGAACACAATTAACCTGAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAGGGAATTCTGCCCTGTGGAACACAATTAACCTGAGGAT  50

seq1  TTCATACAGAGAAATGGATGCCTTAAGAGCTCACTCATATGTGGGGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAGAGAAATGGATGCCTTAAGAGCTCACTCATATGTGGGGGTTT  100

seq1  AAGAGTCAAAGAAGTAGAATGGACTGGAGTTTGCCAGAGGTTAGAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCAAAGAAGTAGAATGGACTGGAGTTTGCCAGAGGTTAGAAAGGG  150

seq1  GCCATGAGCTTGTCAAAGATCTAGTTTATACAATAAATTCTAGAGGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAGCTTGTCAAAGATCTAGTTTATACAATAAATTCTAGAGGTCCA  200

seq1  CTCTACCACATTGGGCCTCAAATTCAGAATATCTTACTGTATTATAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCACATTGGGCCTCAAATTCAGAATATCTTACTGTATTATAAAAA  250

seq1  TTAACTAGCAATCTATATCCTAGTTAGATGTTCTAACCAATGGAAAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAGCAATCTATATCCTAGTTAGATGTTCTAACCAATGGAAAGAAG  300

seq1  CACTGAGATAATAGATAATATTATGTCACTGATCATGATGCTAGGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGATAATAGATAATATTATGTCACTGATCATGATGCTAGGTTTTA  350

seq1  TAGGGGTAGGTTTGCCTCTAAACCTATACCATAATCCATACCTTTAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGTAGGTTTGCCTCTAAACCTATACCATAATCCATACCTTTAAATT  400

seq1  TAAAAATATAATATATCTCCATATATAATAATGGAGATACATATAAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATAATATATCTCCATATATAATAATGGAGATACATATAAACCA  450

seq1  TTTATGAGACACAATAAGCAAACAGAACGAGAGATACAAGAAATGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGACACAATAAGCAAACAGAACGAGAGATACAAGAAATGAGAAA  500

seq1  CCTACATGTTCAAGTATTTGTCTTAGTTTGTTCTCTATTGCTTTGATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATGTTCAAGTATTTGTCTTAGTTTGTTCTCTATTGCTTTGATAAG  550

seq1  AACATCATGATAAAGGTAAACTGGGGGAAAATATTTTATTTCATTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATGATAAAGGTAAACTGGGGGAAAATATTTTATTTCATTTCACA  600

seq1  GCTTGTAGTGTGTCTTGATGGGAAGCTAAGTCAGGAACTCTAGCAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAGTGTGTCTTGATGGGAAGCTAAGTCAGGAACTCTAGCAGGCAG  650

seq1  GAACTTGGAGGTAGGAACTGAGGCAAAAAAAAAAAAAAAAAAAAAAAAAA  700
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAACTTGGAGGTAGGAACTGAGGC-AAAAAAAAAAAAAAAAAAAAAAAAA  699

seq1  AAAACCATAGAGGGATGCTTCTTAACTGGCTTGTTTTTCATAGCTCTCTC  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAACCATAGAGGGATGCTTCTTAACTGGCTTG-TTTTCATAGCTCTCTC  748

seq1  TCTTCTTGCTTTTATTGTTGTTGCTGCTGTGGCTGTGGCTG-TTTCTGTG  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTTCTTGCTTTTATTGTTGTTGCTGCTGTGGCTGTGGCTGTTTTCTGTG  798

seq1  GCTGTTACTGTTGCTACTGTTGTTATTGTTTTGTTATAAAA-TCAAGGAC  848
      |||| |||||||||||||||||||  || ||||||| |||| ||| ||||
seq2  GCTG-TACTGTTGCTACTGTTGTTTATG-TTTGTTAAAAAATTCAGGGAC  846

seq1  CACCTTCCCAGTAATGGTACCAC-ACAGAGTGGGTTGGGCTTCCCCATAT  897
      |||||||||||||||| |||||| |||||||||||| ||||| |||||||
seq2  CACCTTCCCAGTAATGTTACCACAACAGAGTGGGTTTGGCTT-CCCATAT  895

seq1  AAACTGT-CAATCAAG-AAAATGTCCAATAGAC-TTATC-TCTAGGGAGA  943
      ||||||| || ||| | ||||| ||||||  || ||||| |||||||| |
seq2  AAACTGTCCATTCATGAAAAATTTCCAATGAACTTTATCTTCTAGGGA-A  944

seq1  TCTAATGAAGGCATCTT-CTCAGTTGAG  970
      ||||||||| ||||||| ||||||||||
seq2  TCTAATGAATGCATCTTCCTCAGTTGAG  972


| Home | SequenceCutter | Blast | Download |