BAC Information

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BAC

Clone NameB6Ng01-224I20
Chromosome7 (Build37)
Map Location 21,348,359 - 21,349,492
singlet/doubletsinglet
Overlap geneLOC100043559
Upstream geneBcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936
Downstream geneLOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262, EG667259, LOC100043574, LOC100043576, Gm1447, LOC100043006, LOC100043583, EG435953, LOC673902, EG667240, EG435951, Gm1446, LOC381937, LOC100043588, LOC670764, EG667215, LOC100043013, LOC621561, EG667199, EG621510, LOC667186, EG628475, LOC100043595, LOC100043596, LOC667358, LOC100043016
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224I20.bB6Ng01-224I20.g
ACCGA038979GA038980
length1,1801,132
definitionB6Ng01-224I20.b B6Ng01-224I20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaacacatcaaaacaatcattcatcatgatcaagtaggcttc
atcccagggatgcagagatggtttaatatacagaaatccatcaacacaat
ccactatataaacaaagacaaaaacctcacgatcattttttagatgccga
gaaagcatttgacaaaatccaactcccattcatgatgaaagtcttgaaaa
gatcaggaattcaaagtccttacttaaacataataaaaacaatacacagc
aaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatccc
actaaaatcagggactagagaaggttgcccactttctccctacatattca
atatagtactcaaagtcctagccagaaaaattagacaacaaaaggggaga
caaattgacaaattggaaaggaacaaggcaaaatatcactatttgcagat
gatatgatactatatataagtgatcctaaaaattccaccagagaactcct
aaacctgatgaacagtttgagtgaagtagctggatatagtattaactaaa
aaaaaatcaatggcctttctctacacaaaggataaacaggctgagacaga
aattaaggaaacaacacccttcacaatagtcacaaataatataaaatacc
ttggtgtgactctaaccaaagacctgaaagatctgtatgataggaactta
aagtctctgaaaaaaaaatcaaagaagatctcagaagatggaaagatctc
ccattcttatggattgacaggattaatatagtaaaaattactatcttgct
gaaaaaaatctacagattcaatgcaatccccatcaaaattccaagaattt
ctaattcttcaatgaattagaaagggcaatttggaaattcatctgggaat
aacaaaaaccctaggatagcaaaactattctcaatgataaagaatctctg
gtgggatcacatgcctgacatcagctgtactacagatcaattatgataaa
actgcatgatactggtacaagacgacaggtagatcaggttatagattgag
accagaaatgacccacacacctatgttcaatggatcttgacaggatctaa
ccatcaatgtaaaaaagaccggcatcacattgtgctgctcaactggccag
tacaagtttcaaggagtgtgcgaattgcac
gaattcacttggacaaccggatccttctacggcaaagcttttcttgcttc
aacataaggaagaccccgaactggaaaatggtgctgcttatatagcccgc
agcgtgacgtttcagcacctgatgtggcgtgacagcacctgattagttgc
tcgcccatcaccccattactacgccccgagatgggcagtgactgggcgtg
aatttactcttgcacttgcacataaggcttgtttactagctaggcgcagt
ggaagccagcaccatcttataatggcgattgctcacagcacggctctcca
cactgggcatatatccagaagatgttccaactgttaataagaacacatgc
tccactatgttcatagcagcctttggtttttgttctgcatcaaaaggctc
tgattcctttgagcaagtaagagctttctgtagttgctcctttatcaata
gaacattttatatcatgttgtatttcctaggttttgaagatcagcttttc
ttatacactggggagattttacagtcattactcaattcagaacttatttt
taactgggacacagaagaccattctcatttttctttgtttgtttgtatgt
ggtatatgcataaaacacttacataacttgtttgttttgtattgttttta
atactcaaaagaactgaagatgaaaacacaagttgatgagattccatcat
tgtgaacattcccctgaaaccataacctttcagattaagcagattctaca
atttattggatagcttaaaagaaatcacataagaattgttgtattatcat
gtaaatacagtgctttatttacagaatgttatccacttccccttcaggaa
atggaattaaacaaagtagtagtgtgattttaataacaagacgtgggcta
agtgtggtggtacatgcctttgatcccagtgctccagaggcagatggagc
tctgatttaagagtccaagttggtctacaagagacaggtccaggtcagcc
agtctgtgaaaaggtcctctggtgaacaattccaattgtagagagttaaa
atctgtactaaacgtttgtgaatcatttgatgtggaatagatttcatgtt
ggagcctgacatagcattaacctctgctgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_21348359_21349492
seq2: B6Ng01-224I20.g_70_1201

seq1  GAATTCACTTGGACAACCGGATCCTTCTACGGCAAAGCTTTTCTTGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGGACAACCGGATCCTTCTACGGCAAAGCTTTTCTTGCTTC  50

seq1  AACATAAGGAAGACCCCGAACTGGAAAATGGTGCTGCTTATATAGCCCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGGAAGACCCCGAACTGGAAAATGGTGCTGCTTATATAGCCCGC  100

seq1  AGCGTGACGTTTCAGCACCTGATGTGGCGTGACAGCACCTGATTAGTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGACGTTTCAGCACCTGATGTGGCGTGACAGCACCTGATTAGTTGC  150

seq1  TCGCCCATCACCCCATTACTACGCCCCGAGATGGGCAGTGACTGGGCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCATCACCCCATTACTACGCCCCGAGATGGGCAGTGACTGGGCGTG  200

seq1  AATTTACTCTTGCACTTGCACATAAGGCTTGTTTACTAGCTAGGCGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACTCTTGCACTTGCACATAAGGCTTGTTTACTAGCTAGGCGCAGT  250

seq1  GGAAGCCAGCACCATCTTATAATGGCGATTGCTCACAGCACGGCTCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAGCACCATCTTATAATGGCGATTGCTCACAGCACGGCTCTCCA  300

seq1  CACTGGGCATATATCCAGAAGATGTTCCAACTGTTAATAAGAACACATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCATATATCCAGAAGATGTTCCAACTGTTAATAAGAACACATGC  350

seq1  TCCACTATGTTCATAGCAGCCTTTGGTTTTTGTTCTGCATCAAAAGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTATGTTCATAGCAGCCTTTGGTTTTTGTTCTGCATCAAAAGGCTC  400

seq1  TGATTCCTTTGAGCAAGTAAGAGCTTTCTGTAGTTGCTCCTTTATCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCTTTGAGCAAGTAAGAGCTTTCTGTAGTTGCTCCTTTATCAATA  450

seq1  GAACATTTTATATCATGTTGTATTTCCTAGGTTTTGAAGATCAGCTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTTATATCATGTTGTATTTCCTAGGTTTTGAAGATCAGCTTTTC  500

seq1  TTATACACTGGGGAGATTTTACAGTCATTACTCAATTCAGAACTTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACTGGGGAGATTTTACAGTCATTACTCAATTCAGAACTTATTTT  550

seq1  TAACTGGGACACAGAAGACCATTCTCATTTTTCTTTGTTTGTTTGTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGACACAGAAGACCATTCTCATTTTTCTTTGTTTGTTTGTATGT  600

seq1  GGTATATGCATAAAACACTTACATAACTTGTTTGTTTTGTATTGTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATGCATAAAACACTTACATAACTTGTTTGTTTTGTATTGTTTTTA  650

seq1  ATACTCAAAAGAACTGAAGATGAAAACACAAGTTGATGAGATTCCATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAAAAGAACTGAAGATGAAAACACAAGTTGATGAGATTCCATCAT  700

seq1  TGTGAACATTCCCCTGAAACCATAACCTTTCAGATTAAGCAGATTCTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACATTCCCCTGAAACCATAACCTTTCAGATTAAGCAGATTCTACA  750

seq1  ATTTATTGGATAGCTTAAAAGAAATCACATAAGAATTGTTGTATTATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGGATAGCTTAAAAGAAATCACATAAGAATTGTTGTATTATCAT  800

seq1  GTAAATACAGTGCTTTATTTACAGAATGTTATCCACTTCCCCTTCAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATACAGTGCTTTATTTACAGAATGTTATCCACTTCCCCTTCAGGAA  850

seq1  ATGGAATTAAACAAAGTAGTAGTGTGA-TTTAATAACAAGACGTGGGCTA  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGGAATTAAACAAAGTAGTAGTGTGATTTTAATAACAAGACGTGGGCTA  900

seq1  AGTGTGGTGGTACATGCCTTTGATCCCAGTGCTCCAGAGGCAGATGGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTGGTACATGCCTTTGATCCCAGTGCTCCAGAGGCAGATGGAGC  950

seq1  TCTGATTTAAGAGTCC-AGTTGGTCTAC-AGAGACAGGTCCAGGTCAGCC  997
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TCTGATTTAAGAGTCCAAGTTGGTCTACAAGAGACAGGTCCAGGTCAGCC  1000

seq1  AGTCTGTGAAAAGGTTCCTCTGGTGAACAATTCC-ATTGTAGAGAGTTAA  1046
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  AGTCTGTGAAAAGG-TCCTCTGGTGAACAATTCCAATTGTAGAGAGTTAA  1049

seq1  AATCTGTACTAAAACGTTTGTGGAATCATTTTGATGTGGAAATAGA-TTC  1095
      |||||||||| |||||||||| |||||| |||||||||| |||||| |||
seq2  AATCTGTACT-AAACGTTTGT-GAATCA-TTTGATGTGG-AATAGATTTC  1095

seq1  ATGGTTGGAG-CTGACATTAGCAATTAACATCTGCTGACT  1134
      || ||||||| |||||| |||| |||||| ||||||||||
seq2  AT-GTTGGAGCCTGACA-TAGC-ATTAACCTCTGCTGACT  1132