BAC Information

Click to search

BAC

Clone NameB6Ng01-224N24
Chromosome7 (Build37)5 (Build37)
Map Location 15,140,809 - 15,141,821138,213,392 - 138,213,426
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251
Downstream geneB430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224N24.bB6Ng01-224N24.g
ACCGA039213GA039214
length1,024800
definitionB6Ng01-224N24.b B6Ng01-224N24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,140,809 - 15,141,821)(138,213,392 - 138,213,426)
sequence
gaattcattgtttttaatggctgagtagtactccattgtgtaaatgtacc
acattttctgtacacattcctctgttgagtgacatctgggttctatccac
tttctggctattataaataaggctgttgtgagcatagtggagcatgtgca
tttattaccagttggaacatcttctgggtatatgcccaggacaggtattg
ctggatcttccggtagtactacatccaattttctgaggaaccgccggact
gacttccagagtggttgtacaagcttgcaatcccaccagcaatggaagat
tgttcctatttctctccagtatctgctgtcacctaaatttttaatcttag
ccgcatcaggtgccctaaatctgcagttatagatatttgtaagctatcaa
gaaggagcttatagattggtcatgtaacttggtccttctgcatgaacaaa
aattggtcttaactattaaattattttccaagtaatttatatcaaggcta
tatgaggtaataatctctttcttccccagggttctctgatcattacctaa
tgttgcctctgtgtctgtgcctctgcacacatcatcagttggtgtaaact
catctaatgatgacttggctaggcaccaatctacgaatatggcagaatat
cattaggaatgatttcaataaggctttgctagcagtgtctatatctctgg
actatctgctatccctttcatggtcacacaggcagtgtgagacatgggat
gcttcttgtgtgagcatcaaatttagaccagtcattggatgtgatagctg
taagctgtgagccaccattgcccccagcaaaccttgaagcaaggcagatt
gtagatgggaaagttttgggactgggttggtgatacagttccactactgg
gagacttgcctgggttacaaaaggaaggagaagaattcctttcatcacct
ggagtcctaactagggaccaccctcacaaattcagaaagttaccactgca
ctacattccacccccaacactttc
gaattctcggtttagttctatacctcatttttgattgggttgttcagttt
ttctggtggttagattcttgagttcttttatattttgagttcttttatat
tttggatattagccgtctattggatgtggtgttagtgaagttttttcccc
ccaatttgtaggttgccgatttttcttattgactatgccctttgacttac
agaagatttccagtttcaagaggtcccatttatcaattcttgattttaga
gcctgagccattggagttctgtgtaggaaattttctcctgtgccaatgag
ttcaagactttctcactttcttttctattagatacagtgtgtttggtttt
atgtggaggtgctttacctacttggacttgaggtttgtgcatggtgacaa
atatgtatctattttccttttccacatacagactgccagttattccagga
tcatttattgaagttgctttcatttttctccatgtttatttttgggttct
ttgttaaagatcaaagtgtccataagtgttgtggttccatttctggggct
tcacttctattccattgatcaacatatatggctctgtaccaataccatgc
agtttttatcactattgctctgtagtatagcttgaggtcagggatgatga
ttcccccagaagttcttttatttttaagaactattttcactattcttagg
tttttttttttccttttccaaatgaatttaagattttccttgtccatgtg
tttcaagaattgggttgggatttttttttttaagatttatttattattaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_15140809_15141821
seq2: B6Ng01-224N24.b_48_1069

seq1  GAATTCATTGTTTTTAATGGCTGAGTAGTACTCCATTGTGTAAATGTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTTTAATGGCTGAGTAGTACTCCATTGTGTAAATGTACC  50

seq1  ACATTTTCTGTACACATTCCTCTGTTGAGTGACATCTGGGTTCTATCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTGTACACATTCCTCTGTTGAGTGACATCTGGGTTCTATCCAC  100

seq1  TTTCTGGCTATTATAAATAAGGCTGTTGTGAGCATAGTGGAGCATGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGCTATTATAAATAAGGCTGTTGTGAGCATAGTGGAGCATGTGCA  150

seq1  TTTATTACCAGTTGGAACATCTTCTGGGTATATGCCCAGGACAGGTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACCAGTTGGAACATCTTCTGGGTATATGCCCAGGACAGGTATTG  200

seq1  CTGGATCTTCCGGTAGTACTACATCCAATTTTCTGAGGAACCGCCGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCTTCCGGTAGTACTACATCCAATTTTCTGAGGAACCGCCGGACT  250

seq1  GACTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAGCAATGGAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAGCAATGGAAGAT  300

seq1  TGTTCCTATTTCTCTCCAGTATCTGCTGTCACCTAAATTTTTAATCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTATTTCTCTCCAGTATCTGCTGTCACCTAAATTTTTAATCTTAG  350

seq1  CCGCATCAGGTGCCCTAAATCTGCAGTTATAGATATTTGTAAGCTATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATCAGGTGCCCTAAATCTGCAGTTATAGATATTTGTAAGCTATCAA  400

seq1  GAAGGAGCTTATAGATTGGTCATGTAACTTGGTCCTTCTGCATGAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCTTATAGATTGGTCATGTAACTTGGTCCTTCTGCATGAACAAA  450

seq1  AATTGGTCTTAACTATTAAATTATTTTCCAAGTAATTTATATCAAGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTCTTAACTATTAAATTATTTTCCAAGTAATTTATATCAAGGCTA  500

seq1  TATGAGGTAATAATCTCTTTCTTCCCCAGGGTTCTCTGATCATTACCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGTAATAATCTCTTTCTTCCCCAGGGTTCTCTGATCATTACCTAA  550

seq1  TGTTGCCTCTGTGTCTGTGCCTCTGCACACATCATCAGTTGGTGTAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTCTGTGTCTGTGCCTCTGCACACATCATCAGTTGGTGTAAACT  600

seq1  CATCTAATGATGACTTGGCTAGGCACCAATCTACGAATATGGCAGAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATGATGACTTGGCTAGGCACCAATCTACGAATATGGCAGAATAT  650

seq1  CATTAGGAATGATTTCAATAAGGCTTTGCTAGCAGTGTCTATATCTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGAATGATTTCAATAAGGCTTTGCTAGCAGTGTCTATATCTCTGG  700

seq1  ACTATCTGCTATCCCTTTCATGGTCACACAGGCAGTGTGAGACATGGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTGCTATCCCTTTCATGGTCACACAGGCAGTGTGAGACATGGGAT  750

seq1  GCTTCTTGTGTGAGCATCAAA-TTAGACCAGTCATTGGATGTGATAGCTG  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTTCTTGTGTGAGCATCAAATTTAGACCAGTCATTGGATGTGATAGCTG  800

seq1  TAAGCTGTGAGCCACCATTGCCCCCAGCAAACCTTGAAGCAAGGCAGATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGTGAGCCACCATTGCCCCCAGCAAACCTTGAAGCAAGGCAGATT  850

seq1  GTAGAT-GGAAAGTTTTGGGACTGGGTTGGTGATACAGTTCCACTACTGG  898
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGGGAAAGTTTTGGGACTGGGTTGGTGATACAGTTCCACTACTGG  900

seq1  AAGACTTGCCT-GGTTACAAAA-GAAGGAG-AGAAT--CCTTCATCACCT  943
       |||||||||| |||||||||| ||||||| |||||  | ||||||||||
seq2  GAGACTTGCCTGGGTTACAAAAGGAAGGAGAAGAATTCCTTTCATCACCT  950

seq1  GGAGTCCTAACTAGGGA-CACCCTCACAAATTCAGAAAGTTACCACTGCA  992
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGAGTCCTAACTAGGGACCACCCTCACAAATTCAGAAAGTTACCACTGCA  1000

seq1  CTACATTTCCACCCC--ACACTT  1013
      ||||| |||||||||  ||||||
seq2  CTACA-TTCCACCCCCAACACTT  1022

seq1: chr5_138213392_138213426
seq2: B6Ng01-224N24.g_835_868 (reverse)

seq1  TTAAAAATAAATAGAATCTTAAAAAAAAAAATCCC  35
      |||| |||||||| |||||||||||||||||||||
seq2  TTAATAATAAATA-AATCTTAAAAAAAAAAATCCC  34