BAC Information

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BAC

Clone NameB6Ng01-227O20
Chromosome7 (Build37)
Map Location 129,602,745 - 129,733,288
singlet/doubletdoublet
Overlap genePrkcb1
Upstream geneHs3st2, Usp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, LOC668486
Downstream geneCacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227O20.bB6Ng01-227O20.g
ACCGA041470GA041471
length7951,136
definitionB6Ng01-227O20.b B6Ng01-227O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,732,497 - 129,733,288)(129,602,745 - 129,603,875)
sequence
gaattcttaggaagataaggaaagagcacagaattatgggtgattctaga
atccaaaggaagtccataagttagcctctatcctgtcatcttttctgtta
catagaaagatattttttccatgaaaatattacttttaaggtgtctctga
agatcatggagctaacaaaacaaacaaacaaacagattcagagaatttag
ttaactccaagtatttctggctctcctactttgtgagacagtgctcagga
gctctaactgttccctcagtcaataggggtctgctgcatgtttgctatgt
gccagacactattcctggagctagatacattaactatgaacaagataaat
aagaatgcttcttttatattccaattaagtcccagtgtcgagcaaagata
agaaacatttcaccacataatcatggctatttgaactctgaactgcaatt
tggagaatagaaagatgatagagagatagtaagggtggaaggggatgtca
ctgtacaacgggtctctaagacagtgacatctgggctttaaagaatttgt
cctttgctttcatcctgatattggcatctgtgtggatgagcagggtttca
tagactggaaaactcctgcctgtcttcatccatgtgagattgctcccata
gctcatggggtatctttcattcttacttcttcctaaacatctactccaaa
gttcagcattctgcgcaccagtgggtagggatgcttgctgcctcagactt
atctcttttctgatagttctctaggagttatggaaccctactttc
gaattcacctgtgctggactggcagagacttacccgttcctcacggcaaa
accagtacaaaaaaactagacacaatggtgtggggatttgaaggaaccgt
ttcttccaggcttgcgacacaaactctgtagacttacgtaactaatttgt
atatacaaggcctcaccatttcatcacggaaggagtcggttttgttaagt
tggccaatttctgaggccccagaagggtttagtagcactgacctgctgag
ccctaatgtggtcagagtttgcttaaaccatataaaagttaaaaactata
actcctttttgaaagggccgtttcagaaacctggtgagttcttagagaag
atggcttcatcaagaggcttttccttcaaggacaggccaagggaggaggc
agctgtctcccagagaggtgcttgtggggtaggagtgggacaacagagaa
tcttagggtaacaagttcaaggaaagcctgccctatccctcaccattgac
ttgagccttcagtgcctgagggacaaaaactgaggctctgctgccaccta
gtggttgaaaacggttgccatgggcagtcacatttacagagtgtatttag
agccacaggaccatcttgcctgataagttcattttaggaatgtgatctag
ggaagtgagcattatcctggtacccatcctgaaacaggttcatcaggtgc
tcagttccccagctaggtccaactgacttgaaagcactctcctatacaca
ccaagttactgttttagcttagcttcgtctcgttgcttagtttcccattt
atttccttttctagtttagcagcagtagctcttaggggaatccactcgga
gtctttgatgatttgagggcacaggagtcttttgagctcaaggtcaggta
ttctgcataattgtactaatgttctctcagctgtcctggggacacattct
gtgatattcttgttgcttatagcaacaagtaccatggaactttgaatctt
gcagaagttcttgaaggtctaggtcagtagtgttattctctgtgctggct
caaaggactcttgatctatacttctgctgtgctgacaagtctttgggggt
ctgtgaactctatggtgaaatgtgtcttgctgtacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_129732497_129733288
seq2: B6Ng01-227O20.b_50_844 (reverse)

seq1  GAAAGTA-GGTTCCATAACTCCTAGAGAACTATCAG-AAAGAGATAAGTC  48
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  GAAAGTAGGGTTCCATAACTCCTAGAGAACTATCAGAAAAGAGATAAGTC  50

seq1  TGAGGCAGCAAGCATCCCTACCCACTGGTGCGCAGAATGCTG-ACTTTGG  97
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAGGCAGCAAGCATCCCTACCCACTGGTGCGCAGAATGCTGAACTTTGG  100

seq1  AGTAGATGTTTAGGAAGAAGTAAGAATGAAAGATACCCCATGAGCTATGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATGTTTAGGAAGAAGTAAGAATGAAAGATACCCCATGAGCTATGG  150

seq1  GAGCAATCTCACATGGATGAAGACAGGCAGGAGTTTTCCAGTCTATGAAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATCTCACATGGATGAAGACAGGCAGGAGTTTTCCAGTCTATGAAA  200

seq1  CCCTGCTCATCCACACAGATGCCAATATCAGGATGAAAGCAAAGGACAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTCATCCACACAGATGCCAATATCAGGATGAAAGCAAAGGACAAA  250

seq1  TTCTTTAAAGCCCAGATGTCACTGTCTTAGAGACCCGTTGTACAGTGACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAAGCCCAGATGTCACTGTCTTAGAGACCCGTTGTACAGTGACA  300

seq1  TCCCCTTCCACCCTTACTATCTCTCTATCATCTTTCTATTCTCCAAATTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCCACCCTTACTATCTCTCTATCATCTTTCTATTCTCCAAATTG  350

seq1  CAGTTCAGAGTTCAAATAGCCATGATTATGTGGTGAAATGTTTCTTATCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGAGTTCAAATAGCCATGATTATGTGGTGAAATGTTTCTTATCT  400

seq1  TTGCTCGACACTGGGACTTAATTGGAATATAAAAGAAGCATTCTTATTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCGACACTGGGACTTAATTGGAATATAAAAGAAGCATTCTTATTTA  450

seq1  TCTTGTTCATAGTTAATGTATCTAGCTCCAGGAATAGTGTCTGGCACATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCATAGTTAATGTATCTAGCTCCAGGAATAGTGTCTGGCACATA  500

seq1  GCAAACATGCAGCAGACCCCTATTGACTGAGGGAACAGTTAGAGCTCCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACATGCAGCAGACCCCTATTGACTGAGGGAACAGTTAGAGCTCCTG  550

seq1  AGCACTGTCTCACAAAGTAGGAGAGCCAGAAATACTTGGAGTTAACTAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTCTCACAAAGTAGGAGAGCCAGAAATACTTGGAGTTAACTAAA  600

seq1  TTCTCTGAATCTGTTTGTTTGTTTGTTTTGTTAGCTCCATGATCTTCAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAATCTGTTTGTTTGTTTGTTTTGTTAGCTCCATGATCTTCAGA  650

seq1  GACACCTTAAAAGTAATATTTTCATGGAAAAAATATCTTTCTATGTAACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTAAAAGTAATATTTTCATGGAAAAAATATCTTTCTATGTAACA  700

seq1  GAAAAGATGACAGGATAGAGGCTAACTTATGGACTTCCTTTGGATTCTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATGACAGGATAGAGGCTAACTTATGGACTTCCTTTGGATTCTAG  750

seq1  AATCACCCATAATTCTGTGCTCTTTCCTTATCTTCCTAAGAATTC  792
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCCATAATTCTGTGCTCTTTCCTTATCTTCCTAAGAATTC  795

seq1: chr7_129602745_129603875
seq2: B6Ng01-227O20.g_67_1202

seq1  GAATTCACCTGTGCTGGACTGGCAGAGACTTACCCGTTCCTCACGGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGTGCTGGACTGGCAGAGACTTACCCGTTCCTCACGGCAAA  50

seq1  ACCAGTACAAAAAAACTAGACACAATGGTGTGGGGATTTGAAGGAACCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACAAAAAAACTAGACACAATGGTGTGGGGATTTGAAGGAACCGT  100

seq1  TTCTTCCAGGCTTGCGACACAAACTCTGTAGACTTACGTAACTAATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAGGCTTGCGACACAAACTCTGTAGACTTACGTAACTAATTTGT  150

seq1  ATATACAAGGCCTCACCATTTCATCACGGAAGGAGTCGGTTTTGTTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAAGGCCTCACCATTTCATCACGGAAGGAGTCGGTTTTGTTAAGT  200

seq1  TGGCCAATTTCTGAGGCCCCAGAAGGGTTTAGTAGCACTGACCTGCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAATTTCTGAGGCCCCAGAAGGGTTTAGTAGCACTGACCTGCTGAG  250

seq1  CCCTAATGTGGTCAGAGTTTGCTTAAACCATATAAAAGTTAAAAACTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATGTGGTCAGAGTTTGCTTAAACCATATAAAAGTTAAAAACTATA  300

seq1  ACTCCTTTTTGAAAGGGCCGTTTCAGAAACCTGGTGAGTTCTTAGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTTTGAAAGGGCCGTTTCAGAAACCTGGTGAGTTCTTAGAGAAG  350

seq1  ATGGCTTCATCAAGAGGCTTTTCCTTCAAGGACAGGCCAAGGGAGGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCATCAAGAGGCTTTTCCTTCAAGGACAGGCCAAGGGAGGAGGC  400

seq1  AGCTGTCTCCCAGAGAGGTGCTTGTGGGGTAGGAGTGGGACAACAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTCCCAGAGAGGTGCTTGTGGGGTAGGAGTGGGACAACAGAGAA  450

seq1  TCTTAGGGTAACAAGTTCAAGGAAAGCCTGCCCTATCCCTCACCATTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGGTAACAAGTTCAAGGAAAGCCTGCCCTATCCCTCACCATTGAC  500

seq1  TTGAGCCTTCAGTGCCTGAGGGACAAAAACTGAGGCTCTGCTGCCACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCTTCAGTGCCTGAGGGACAAAAACTGAGGCTCTGCTGCCACCTA  550

seq1  GTGGTTGAAAACGGTTGCCATGGGCAGTCACATTTACAGAGTGTATTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGAAAACGGTTGCCATGGGCAGTCACATTTACAGAGTGTATTTAG  600

seq1  AGCCACAGGACCATCTTGCCTGATAAGTTCATTTTAGGAATGTGATCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGGACCATCTTGCCTGATAAGTTCATTTTAGGAATGTGATCTAG  650

seq1  GGAAGTGAGCATTATCCTGGTACCCATCCTGAAACAGGTTCATCAGGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGAGCATTATCCTGGTACCCATCCTGAAACAGGTTCATCAGGTGC  700

seq1  TCAGTTCCCCAGCTAGGTCCAACTGACTTGAAAGCACTCTCCTATACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCCCAGCTAGGTCCAACTGACTTGAAAGCACTCTCCTATACACA  750

seq1  CCAAGTTACTGTTTTAGCTTAGCTTCGTCTCGTTGCTTAGTTTCCCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTACTGTTTTAGCTTAGCTTCGTCTCGTTGCTTAGTTTCCCATTT  800

seq1  ATTTCCTTTTCTAGTTTAGCAGCAGTAGCTCTTAGGGGAATCCACTCGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTTCTAGTTTAGCAGCAGTAGCTCTTAGGGGAATCCACTCGGA  850

seq1  GTCTTTGATGATTTGAGGGCACAGGAGTCTTTTGAGCTCAAGGTCAGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGATGATTTGAGGGCACAGGAGTCTTTTGAGCTCAAGGTCAGGTA  900

seq1  TTCTGCATAATTGTACTAATG-TCTCTCAGGCTGTCCT-GGGACACA-TC  947
      ||||||||||||||||||||| ||||||| |||||||| |||||||| ||
seq2  TTCTGCATAATTGTACTAATGTTCTCTCA-GCTGTCCTGGGGACACATTC  949

seq1  TGTGATAT--CTGTTGC-TATAGCAACAAAGTACCATGG-ACTTTGATTC  993
      ||||||||   |||||| ||||||||| ||||||||||| ||||||| ||
seq2  TGTGATATTCTTGTTGCTTATAGCAAC-AAGTACCATGGAACTTTGAATC  998

seq1  TTGCAGA--GTCCTGAAGGTCTAGGTCAGTAGTGTTATTCCCTGTGCTGG  1041
      |||||||   || ||||||||||||||||||||||||||| ||||||| |
seq2  TTGCAGAAGTTCTTGAAGGTCTAGGTCAGTAGTGTTATTCTCTGTGCT-G  1047

seq1  GCTCCAAGGGACTC-TGATCTATACTTCTGCTGGTTGCTGAC-AGTCTTT  1089
      ||| ||| |||||| ||||||||||||||||||  ||||||| |||||||
seq2  GCT-CAAAGGACTCTTGATCTATACTTCTGCTG--TGCTGACAAGTCTTT  1094

seq1  GGGGTTCTGTG-ACTCTAATGTG-TATGTGTTCTTTGCTGTACG  1131
      |||| |||||| ||||||  |||  ||||||   ||||||||||
seq2  GGGGGTCTGTGAACTCTATGGTGAAATGTGT--CTTGCTGTACG  1136