BAC Information

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BAC

Clone NameB6Ng01-228F08
Chromosome7 (Build37)
Map Location 116,468,020 - 116,675,675
singlet/doubletdoublet
Overlap geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5
Upstream geneOlfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1
Downstream geneLOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228F08.bB6Ng01-228F08.g
ACCGA041771GA041772
length1,06277
definitionB6Ng01-228F08.b B6Ng01-228F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,674,630 - 116,675,675)(116,468,020 - 116,468,096)
sequence
gaattccttcacttgcaaaagcaaacagcgcttaggggactggaagtaac
ccaagttagagatgagaaatgaggctctgtaagtggctggagcagatctg
aagcaagaccagttgagacacctggtgcaagccccttgagggagttagct
gacaccacaaggccacaggggatagttctcaggaagcctgcatatcactg
ctgctctacagaagacgatgagttagcaattcttctgtcactgtgggggt
cacttgcagcccccccccacacacacacacacccatgcctccagggaagg
ggctttgggagctgctacatagacctctgagtagtccttcgagaatacag
gtaggcctggctttaataaaggtagtcctatgtccttgcaagattctttg
gaatagccagacctttcctatccttagcacagggctggtggtagagataa
ggggcaggatggcaggacagccgtcggaaggaaactgtcataggaaatgg
aggggacatggcaacaaggacaacagcattgtctctccagacatggtaga
ggccagcactcctaagtactggattcttcctatggtctagaaagcagtgg
tcgattgtgggtctggtcagtatgctgaaggagatgggaaagaaggcagg
agactcgtgcaaatggggtgtgtgactccctggttcttcatatccatggg
agcagttagctttctctactttcctcagagcttatgtttgggtcccctag
tactaggcgtttgctaggagcagagcttagaatcggaaggaaggagagcc
tgggtctccctgcatcgtaagaggattggaagccttggaaggagaaggct
gaaaggaagagtagccagcagacacttgtgtgtgcagcctgggctcttca
ctagcctgcttctgccctgcctttacttccctccaaggtgttaagagcct
gcgtcgcctatggactccccgccttggagcaacgtggacttttgagtgcc
ttcttcaccttgcttcattggtgcgtcagcttatctaaatcttttgcctc
attggctgttgg
ttttgtgctgggaaggtactttaccaactaaactaacatcccagccatat
tgggggtgtgtgtgcgggtggggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_116674630_116675675
seq2: B6Ng01-228F08.b_49_1110 (reverse)

seq1  CCAACAG-CAATGAGGC-AAAGATTCGGATAAGCTGACGCA-CACTGAGG  47
      ||||||| ||||||||| |||||||  |||||||||||||| || ||| |
seq2  CCAACAGCCAATGAGGCAAAAGATTTAGATAAGCTGACGCACCAATGAAG  50

seq1  C-AGGTGAAG-AGGCACTC-AAAGTCCACG-TGCTCC-AGGC-GGGAGTC  91
      | |||||||| |||||||| |||||||||| |||||| |||| |||||||
seq2  CAAGGTGAAGAAGGCACTCAAAAGTCCACGTTGCTCCAAGGCGGGGAGTC  100

seq1  CATAGGCCGACGCA-GCTC-TAACACC-TGGAGGGAAGTAAAGGCAGGGC  138
      |||||| ||||||| |||| ||||||| ||||||||||||||||||||||
seq2  CATAGG-CGACGCAGGCTCTTAACACCTTGGAGGGAAGTAAAGGCAGGGC  149

seq1  AGAAGCAGGCTAGGTGAGAGCCCAGGCTGCACACAC-AGTGTCTGCTGGC  187
      |||||||||||||   |||||||||||||||||||| |||||||||||||
seq2  AGAAGCAGGCTAGTGAAGAGCCCAGGCTGCACACACAAGTGTCTGCTGGC  199

seq1  TACTCTTCCTTTCAGCCTTCTCCTTCCAAGGCTTCCAATCCTCTTACGAT  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCCTTTCAGCCTTCTCCTTCCAAGGCTTCCAATCCTCTTACGAT  249

seq1  GCA-GGAGACCCAGGCTCTCCTTCCTTCCGATTCT-AGCTCTGCTCCTAG  285
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCAGGGAGACCCAGGCTCTCCTTCCTTCCGATTCTAAGCTCTGCTCCTAG  299

seq1  CAAACGCCTAGTACTAGGG--ACCAAACATAAGCTCTGAGGAAAGTAGAG  333
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  CAAACGCCTAGTACTAGGGGACCCAAACATAAGCTCTGAGGAAAGTAGAG  349

seq1  AAAGCTAACTGCTCCCATGGATATGAAGAACCAGGGAGTCACACACCCCA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAACTGCTCCCATGGATATGAAGAACCAGGGAGTCACACACCCCA  399

seq1  TTTGCACGAGTCTCCTGCCTTCTTTCCCATCTCCTTCAGCATACTGACCA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACGAGTCTCCTGCCTTCTTTCCCATCTCCTTCAGCATACTGACCA  449

seq1  GACCCACAATCGACCACTGCTTTCTAGACCATAGGAAGAATCCAGTACTT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACAATCGACCACTGCTTTCTAGACCATAGGAAGAATCCAGTACTT  499

seq1  AGGAGTGCTGGCCTCTACCATGTCTGGAGAGACAATGCTGTTGTCCTTGT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGCTGGCCTCTACCATGTCTGGAGAGACAATGCTGTTGTCCTTGT  549

seq1  TGCCATGTCCCCTCCATTTCCTATGACAGTTTCCTTCCGACGGCTGTCCT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGTCCCCTCCATTTCCTATGACAGTTTCCTTCCGACGGCTGTCCT  599

seq1  GCCATCCTGCCCCTTATCTCTACCACCAGCCCTGTGCTAAGGATAGGAAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTGCCCCTTATCTCTACCACCAGCCCTGTGCTAAGGATAGGAAA  649

seq1  GGTCTGGCTATTCCAAAGAATCTTGCAAGGACATAGGACTACCTTTATTA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGCTATTCCAAAGAATCTTGCAAGGACATAGGACTACCTTTATTA  699

seq1  AAGCCAGGCCTACCTGTATTCTCGAAGGACTACTCAGAGGTCTATGTAGC  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGCCTACCTGTATTCTCGAAGGACTACTCAGAGGTCTATGTAGC  749

seq1  AGCTCCCAAAGCCCCTTCCCTGGAGGCATGGGTGTGTGTGTGTGTGGGGG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCAAAGCCCCTTCCCTGGAGGCATGGGTGTGTGTGTGTGTGGGGG  799

seq1  GGGGCTGCAAGTGACCCCCACAGTGACAGAAGAATTGCTAACTCATCGTC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGCAAGTGACCCCCACAGTGACAGAAGAATTGCTAACTCATCGTC  849

seq1  TTCTGTAGAGCAGCAGTGATATGCAGGCTTCCTGAGAACTATCCCCTGTG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGAGCAGCAGTGATATGCAGGCTTCCTGAGAACTATCCCCTGTG  899

seq1  GCCTTGTGGTGTCAGCTAACTCCCTCAAGGGGCTTGCACCAGGTGTCTCA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTGGTGTCAGCTAACTCCCTCAAGGGGCTTGCACCAGGTGTCTCA  949

seq1  ACTGGTCTTGCTTCAGATCTGCTCCAGCCACTTACAGAGCCTCATTTCTC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTTGCTTCAGATCTGCTCCAGCCACTTACAGAGCCTCATTTCTC  999

seq1  ATCTCTAACTTGGGTTACTTCCAGTCCCCTAAGCGCTGTTTGCTTTTGCA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAACTTGGGTTACTTCCAGTCCCCTAAGCGCTGTTTGCTTTTGCA  1049

seq1  AGTGAAGGAATTC  1046
      |||||||||||||
seq2  AGTGAAGGAATTC  1062

seq1: chr7_116468020_116468096
seq2: B6Ng01-228F08.g_72_148

seq1  TTTTGTGCTGGGAAGGTACTTTACCAACTAAACTAACATCCCAGCCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGCTGGGAAGGTACTTTACCAACTAAACTAACATCCCAGCCATAT  50

seq1  TGGGGGTGTGTGTGCGGGTGGGGGGTG  77
      |||||||||||||||||||||||||||
seq2  TGGGGGTGTGTGTGCGGGTGGGGGGTG  77