BAC Information

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BAC

Clone NameB6Ng01-228H16
Chromosome7 (Build37)
Map Location 3,615,449 - 3,616,160
singlet/doubletsinglet
Overlap geneLeng1
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3
Downstream geneTmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228H16.bB6Ng01-228H16.g
ACCGA041882GA041883
length1,143717
definitionB6Ng01-228H16.b B6Ng01-228H16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gggaattcctgatctttccagaacttttatcatgaatgggtgttggatct
tgtcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtct
ttgagtttgtttatatagtggattacattgatggattttcgtatattaaa
ccatccctgcattcctggaataaaacctacttggtcaggatggatgattg
ctttaatgtgatcttggattcggttagcgagaattttattgaggattttt
gcatcgatattcataagagaaattggtctgaagttctctatctttgttgg
atctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagt
tgggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaact
ggaattagatcttctttgaaggtctgatagaactctgcactaaacccgtc
tggtcctgggctttttttggctgggagactatttataactgcttctattt
ctttaggggatatgggactgtttagaaggtcaacttgatcctgattcaac
tttggtacctggtatctgtccagaaatttgtccatttcgtccaggttttc
cagttttgttgagtatagccttttgtagaaggatctgatggtgttttgga
ttttcttcaggatctgtttgttatgtctcccttttcagttctgattttgt
taattaggatttttgtctcttgtgcccttctagtgagtctagctaagggt
ttatctattcttgttgatttctcaaagaaccaacttcctcgtttggttaa
ttcttttgaatagttcttcttgtttccccttggtgattttcacccctgag
tttgattatttcctgccgtctactcctcttgggtgaatttgcttcctttt
ttttctagagcttttagatgtgtggtcaagctgcctagttatgtgctctc
tcccgtttctctatggaaggccctcagagctattgagttcccttctagaa
atgcttttcattgtggtcccaaaggtttggttatcgtttgtggtcttcat
tttcaataaactcttaaaaagtgtcttagatttccttctttatctttctt
ggaaccaaggtatcatttgaaaaaagatgggttgtttcaggtt
gaattccgtacgggcctatgaagggttatagggaagacattcagaaccca
gaagtgctgaggatacaagaatggtccatgggcagggagggcagtggtag
cacacacctttgaacctagcattcaggagacagaggcacatggatctctg
aattcaaggccagcatggtctacagagtgagttagttccaggactacaca
gaaaaatcctgtcttgaaaagagggggtgggggtggggcaaatattgaga
gcaagaagagataccatttctaacttggagtggagaatcgatgtttttag
acagtaaactgggctatcagagatagttcagagaagatccctgacctaaa
acagaaggcttcccagtctcaagtgatgcaaggaaaacccactcaggtat
aggtataggtggcttgttcagccatagagcccctgccttgtgtgtagttc
caaattcagtccccaacacaagtatgtatatactcccaaacttgtaaggt
aatcaaatattgctttctggacaaaggatctaaatccaaggtatggctcc
aggtcaccactccaagtacaacctgaccccagatagggatggtctctgat
tcacaattctcccctttctgcagccttagtatctgggattaattacaagc
gtcaccttttttgtttgtttgttttgtttttgttttttttttttaaagac
agggttttttctgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3615449_3616160
seq2: B6Ng01-228H16.g_72_788

seq1  GAATTCCGTACGGGCCTATGAAGGGTTATAGGGAAGACATTCAGAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTACGGGCCTATGAAGGGTTATAGGGAAGACATTCAGAACCCA  50

seq1  GAAGTGCTGAGGATACAAGAATGGTCCATGGGCAGGGAGGGCAGTGGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCTGAGGATACAAGAATGGTCCATGGGCAGGGAGGGCAGTGGTAG  100

seq1  CACACACCTTTGAACCTAGCATTCAGGAGACAGAGGCACATGGATCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCTTTGAACCTAGCATTCAGGAGACAGAGGCACATGGATCTCTG  150

seq1  AATTCAAGGCCAGCATGGTCTACAGAGTGAGTTAGTTCCAGGACTACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGGCCAGCATGGTCTACAGAGTGAGTTAGTTCCAGGACTACACA  200

seq1  GAAAAATCCTGTCTTGAAAAGAGGGGGTGGGGGTGGGGCAAATATTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCCTGTCTTGAAAAGAGGGGGTGGGGGTGGGGCAAATATTGAGA  250

seq1  GCAAGAAGAGATACCATTTCTAACTTGGAGTGGAGAATCGATGTTTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGAGATACCATTTCTAACTTGGAGTGGAGAATCGATGTTTTTAG  300

seq1  ACAGTAAACTGGGCTATCAGAGATAGTTCAGAGAAGATCCCTGACCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAACTGGGCTATCAGAGATAGTTCAGAGAAGATCCCTGACCTAAA  350

seq1  ACAGAAGGCTTCCCAGTCTCAAGTGATGCAAGGAAAACCCACTCAGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGCTTCCCAGTCTCAAGTGATGCAAGGAAAACCCACTCAGGTAT  400

seq1  AGGTATAGGTGGCTTGTTCAGCCATAGAGCCCCTGCCTTGTGTGTAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATAGGTGGCTTGTTCAGCCATAGAGCCCCTGCCTTGTGTGTAGTTC  450

seq1  CAAATTCAGTCCCCAACACAAGTATGTATATACTCCCAAACTTGTAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCAGTCCCCAACACAAGTATGTATATACTCCCAAACTTGTAAGGT  500

seq1  AATCAAATATTGCTTTCTGGACAAAGGATCTAAATCCAAGGTATGGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATATTGCTTTCTGGACAAAGGATCTAAATCCAAGGTATGGCTCC  550

seq1  AGGTCACCACTCCAAGTACAACCTGACCCCAGATAGGGATGGTCTCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACCACTCCAAGTACAACCTGACCCCAGATAGGGATGGTCTCTGAT  600

seq1  TCACAATTCTCCCCTTTCTGCAGCCTTAGTATCTGGGATTAATTACAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATTCTCCCCTTTCTGCAGCCTTAGTATCTGGGATTAATTACAAGC  650

seq1  GTCACC-TTTTTGTTTGTTTGTTTTG-TTTTGTTTTGTTTTTT--AAGAC  696
      |||||| ||||||||||||||||||| ||||||||| ||||||  |||||
seq2  GTCACCTTTTTTGTTTGTTTGTTTTGTTTTTGTTTTTTTTTTTTAAAGAC  700

seq1  AGGG-TTTTTCTGTGTA  712
      |||| ||||||||||||
seq2  AGGGTTTTTTCTGTGTA  717