BAC Information

Click to search

BAC

Clone NameB6Ng01-229H24
Chromosome18 (Build37)7 (Build37)
Map Location 69,093,429 - 69,093,54176,533,451 - 76,534,590
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneD18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4, Ccdc68
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229H24.bB6Ng01-229H24.g
ACCGA042626GA042627
length1231,140
definitionB6Ng01-229H24.b B6Ng01-229H24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,093,429 - 69,093,541)(76,533,451 - 76,534,590)
sequence
gaattcttttccttccttcctttcttccttccttcctacctaccttcctt
ccttccttccttccttccttacttccttccttccttcctttctccctccc
tctctctctctctctctttcttt

gaattctttatacataggagtcaattaaaattataaaagaggcctgaggt
gggttttggagcactagcatttggggacacctttagatgtgcaatagaaa
tgggccaggggtcccttcaggacatctcagagttcattgcttaggcttag
ccttctactcatggttgcaaaatcaggagcttgtgcctccagttcatctt
gccgggtggattagcaagctaatggaccattctgttctttcacttttctc
atgtttcaacatacaagacaacatactgaactgctggttgaactgctgat
tgttctccagatgtcaccattttctttttcttgaaaatatagtttctatg
aattgtctgctttgtggaacttagattcccatttttcctcactggccact
caaaaccagagagtggagcattatcctttgcctcaagtcccctcatttcc
tcagcctgagcagagttctgtgatgggaatcagtaagatactcttgcttc
aatgtcacaagtctctctacctttggctttccgtagaaaagggcatcttt
atacttcttcagctaccatgggttcccacatagtctactatcatgctttc
tttggggattcatgctctgggctatatgactgtccatgttatcaagagta
ttccattgaaacaaagggtagagacaagaagagtaggattcttccttctt
tttatattcctggaaaataactgaattcactacaatcatgtcatacacag
acaactggaacattatgagacatttgtgcaaaagagtgttaaacaaaaat
gtaaagaatggcagaaagccagtatgctactactcagggcacagctgcag
agattatttgacattggcaactagtcttgtagtgtgatgatttgggtcag
tcatgttggtaagcattcctggaaaccggaatttaacagcaagacacaga
agtgagtgttggaaccagaccaggtcctctgcaagagcagaaagtgcttt
taatcttttatactgaagccatctctcttgtcccccaggcccatctattg
aaattaaataactttaaaaaatcatgacagttcttcaaacagttccactg
cctttctcagacaattagtagttaagaacccaactagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69093429_69093541
seq2: B6Ng01-229H24.b_50_164 (reverse)

seq1  AAAGAA--AGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGA  48
      ||||||  |||| ||| ||| |||||||||||  ||| ||||||||||||
seq2  AAAGAAAGAGAGAGAGAGAGAGAGGGAGGGAGAAAGGAAGGAAGGAAGGA  50

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG  98
      || |||||||||||||||||||||||||||| ||| ||||||||||||||
seq2  AGTAAGGAAGGAAGGAAGGAAGGAAGGAAGGTAGGTAGGAAGGAAGGAAG  100

seq1  AAAGGAAGGAAGGAA  113
      |||||||||||||||
seq2  AAAGGAAGGAAGGAA  115


seq1: chr7_76533451_76534590
seq2: B6Ng01-229H24.g_65_1204 (reverse)

seq1  TCTCTAACTTGGGTCTT-ACTACTATTTGTCTTGAGAAA-GCAGT-GAAC  47
      ||||||  | || |||| ||||||| ||||| ||||||| ||||| ||||
seq2  TCTCTAGTTGGGTTCTTAACTACTAATTGTC-TGAGAAAGGCAGTGGAAC  49

seq1  TGTTTTTGAAAGAAACTGTCATGATTTTTTAAAGTTATTT-ATTTC-ATA  95
      ||  ||||||   ||||||||||||||||||||||||||| ||||| |||
seq2  TG--TTTGAA--GAACTGTCATGATTTTTTAAAGTTATTTAATTTCAATA  95

seq1  GATGGGGCTGGGGGACAAGAGAGATGGC-TCAGTTATTAAAAGATTAAAA  144
      |||||| ||||||||||||||||||||| |||||   |||||||||||||
seq2  GATGGGCCTGGGGGACAAGAGAGATGGCTTCAGT--ATAAAAGATTAAAA  143

seq1  GCACTTTCTGCTCTTGCAGAGGACCTGGGTCTGGTTCCAACACTCACTTC  194
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCACTTTCTGCTCTTGCAGAGGACCT-GGTCTGGTTCCAACACTCACTTC  192

seq1  TGTGTCTTGCTGTT-AATTCCGGTTCCAGGGAATGCTTACCAACATGACT  243
      |||||||||||||| |||||||||| |  |||||||||||||||||||||
seq2  TGTGTCTTGCTGTTAAATTCCGGTTTCCAGGAATGCTTACCAACATGACT  242

seq1  GA-CCAAATCATCACACTACAAGACTAGTTGCCAATGTCAAATAATCTCT  292
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAATCATCACACTACAAGACTAGTTGCCAATGTCAAATAATCTCT  292

seq1  GCAGCTGTGCCCTGAGTAGTAGCATACTGGCTTTCTGCCATTCTTTACAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTGCCCTGAGTAGTAGCATACTGGCTTTCTGCCATTCTTTACAT  342

seq1  TTTTGTTTAACACTCTTTTGCACAAATGTCTCATAATGTTCCAGTTGTCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTAACACTCTTTTGCACAAATGTCTCATAATGTTCCAGTTGTCT  392

seq1  GTGTATGACATGATTGTAGTGAATTCAGTTATTTTCCAGGAATATAAAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGACATGATTGTAGTGAATTCAGTTATTTTCCAGGAATATAAAAA  442

seq1  GAAGGAAGAATCCTACTCTTCTTGTCTCTACCCTTTGTTTCAATGGAATA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAATCCTACTCTTCTTGTCTCTACCCTTTGTTTCAATGGAATA  492

seq1  CTCTTGATAACATGGACAGTCATATAGCCCAGAGCATGAATCCCCAAAGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGATAACATGGACAGTCATATAGCCCAGAGCATGAATCCCCAAAGA  542

seq1  AAGCATGATAGTAGACTATGTGGGAACCCATGGTAGCTGAAGAAGTATAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGATAGTAGACTATGTGGGAACCCATGGTAGCTGAAGAAGTATAA  592

seq1  AGATGCCCTTTTCTACGGAAAGCCAAAGGTAGAGAGACTTGTGACATTGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCCTTTTCTACGGAAAGCCAAAGGTAGAGAGACTTGTGACATTGA  642

seq1  AGCAAGAGTATCTTACTGATTCCCATCACAGAACTCTGCTCAGGCTGAGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGTATCTTACTGATTCCCATCACAGAACTCTGCTCAGGCTGAGG  692

seq1  AAATGAGGGGACTTGAGGCAAAGGATAATGCTCCACTCTCTGGTTTTGAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGGGACTTGAGGCAAAGGATAATGCTCCACTCTCTGGTTTTGAG  742

seq1  TGGCCAGTGAGGAAAAATGGGAATCTAAGTTCCACAAAGCAGACAATTCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGTGAGGAAAAATGGGAATCTAAGTTCCACAAAGCAGACAATTCA  792

seq1  TAGAAACTATATTTTCAAGAAAAAGAAAATGGTGACATCTGGAGAACAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTATATTTTCAAGAAAAAGAAAATGGTGACATCTGGAGAACAAT  842

seq1  CAGCAGTTCAACCAGCAGTTCAGTATGTTGTCTTGTATGTTGAAACATGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTCAACCAGCAGTTCAGTATGTTGTCTTGTATGTTGAAACATGA  892

seq1  GAAAAGTGAAAGAACAGAATGGTCCATTAGCTTGCTAATCCACCCGGCAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGAAAGAACAGAATGGTCCATTAGCTTGCTAATCCACCCGGCAA  942

seq1  GATGAACTGGAGGCACAAGCTCCTGATTTTGCAACCATGAGTAGAAGGCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACTGGAGGCACAAGCTCCTGATTTTGCAACCATGAGTAGAAGGCT  992

seq1  AAGCCTAAGCAATGAACTCTGAGATGTCCTGAAGGGACCCCTGGCCCATT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAAGCAATGAACTCTGAGATGTCCTGAAGGGACCCCTGGCCCATT  1042

seq1  TCTATTGCACATCTAAAGGTGTCCCCAAATGCTAGTGCTCCAAAACCCAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGCACATCTAAAGGTGTCCCCAAATGCTAGTGCTCCAAAACCCAC  1092

seq1  CTCAGGCCTCTTTTATAATTTTAATTGACTCCTATGTATAAAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCTCTTTTATAATTTTAATTGACTCCTATGTATAAAGAATTC  1140


| Home | SequenceCutter | Blast | Download |