BAC Information

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BAC

Clone NameB6Ng01-230C04
Chromosome7 (Build37)
Map Location 32,795,596 - 32,952,460
singlet/doubletdoublet
Overlap geneLOC100043838, EG668361, LOC668362, EG624584, LOC100043355, LOC546951, EG626740, EG668371
Upstream geneFxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594
Downstream geneEG668377, LOC100043842, LOC634929, EG668379, EG668381, LOC668386, LOC626373, EG384589, EG668393, EG330689, LOC100043362, LOC100043365, EG384591, LOC668398, EG384596, LOC100043370, LOC434161, EG270499, LOC100043845, LOC100043373, LOC668410, EG624439, LOC100043376, LOC100043379, LOC100043383, EG668411, LOC100043850, LOC100043386, LOC668416, EG668526, LOC100043388, LOC270234, EG668419, EG668422, EG546954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230C04.bB6Ng01-230C04.g
ACCGA043077GA043078
length1,159816
definitionB6Ng01-230C04.b B6Ng01-230C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,795,596 - 32,796,851)(32,951,921 - 32,952,460)
sequence
gaattctctctgttgaccaggctgtactccagctcagagatttttctgct
tctgccccccaagtgctgcaattaaaggcctgctccaccactgactggca
tggtagttgttatttaatgtataaaaccaagaaatcactgtagtcctgat
gttgttcaatttcactgctcttaatgtgaccccttatagttacccctttc
ctaactgcccatcagggtgttcattgatttgttttcccctttcagaagac
ctctgtcattagttcaaggactttttgctgccttcaagttgggactgttg
taaataaagctgttctgtgcattcattcatttgttcctctcttctgtgtg
tcaatattcaggcatcaaaggcctgcatgcctcatttgtacatgtgagag
tttatcttctagatatgatggaataagaaagtcaaaaaggaaggtacata
ctacctacatgtatcaagagaaggcacatatgtcatgccacacaatgcta
tgtcagacagattattgttaagtgggagacagaaaaacatgaggaagagg
cctcaccctttcttgggaactccttgggcacaggaaactgttcttggatt
tactggtttgaataagctcaacagttttcagatttgggaccaggcttggt
cctgaggtggtattttggaaaaatgctggatagggtgttaaaagtgaaga
tgttctgttttctcagaatcattgctttgtctgtgagagctttgtccctg
ggaaggccatttggccttccacagaacaagtcaggcttctttaggaagcc
ctaggcgttgtcatatcacatcagaaacagttgaacagagcaatggctct
atgcctgtcagtcttaaacactgaccaatgtatcttgtttgtataacttt
cagtccctcagcctgctcactagcacttgctctcttgatgtgtcttctca
attttgggccagtaatattacagaataagagttgtgttactattgttgca
tgcccatttaacaatggagttcatcatttaatttacacagctttcccagt
cctcttctccctttactgtggctgctgtttgggttgagcttataagaaag
agttggcatgcattggcacagcaatgcatgtagaagatcagaaggacaat
cctgaccat
gaattcatgaaattcctatggaaatggatggatctgaagggtatcatcct
gaatgcgttaacccattcacaaaagaactcaaatgatatacactcactga
taaatggatttttatccagaaatttagaatatccaagatacaatttgcaa
aacacatgaaacacaagaagaaggaaaccaatatgtggatgcttcatccc
cctcttttataatggggaacaaaatactcatggaaggagttacagagcca
aagtttgtaggtgagaccaaaggatgggccatcaagagacttccccaacc
gggaatccatctcataatcagcaaccaaacacagactctattataaatgc
cagcaagattttgctgaaagacccctgatatagctgtctcttgataggct
atgccagagccttgctaatacagaagtgattgttcacagtcgtgtattgc
atggaacactgggccccgaatgaaggagctagagaaaatacccaaggaga
ttaaggagtctgcaaccctataggagaaaaacaatataaagtacccagta
cccccagagcttgtggttctagctgcatatgtagcagaagatggcctagt
cagccatcattgggacaaaaggccctttggtcttgcaaactttatatgta
cagcggaacaccaggaccaagaagagggactaggagggtaggagaggagg
gtcagggaagggtatagggaacgtttgggatagcattgggagatgtaata
ttgaaaatacctaataaaaattccgaatcaatatacaagcttaggttcct
gctttcaaagaaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_32795596_32796851
seq2: B6Ng01-230C04.b_44_1202

seq1  GAATTCTCTCTGTTGACCAGGCTGTACTCCAGCTCAGAGATTTTTCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTTGACCAGGCTGTACTCCAGCTCAGAGATTTTTCTGCT  50

seq1  TCTGCCCCCCAAGTGCTGCAATTAAAGGCCTGCTCCACCACTGACTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCCCAAGTGCTGCAATTAAAGGCCTGCTCCACCACTGACTGGCA  100

seq1  TGGTAGGTGTTATTTAATGTATAAAACCAAGAAATCACTGTAGTCCTGAT  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTGTTATTTAATGTATAAAACCAAGAAATCACTGTAGTCCTGAT  150

seq1  GTTGTTCAATTTCACTGCTCTTAATGTGACCCCTTATAGTTACCCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCAATTTCACTGCTCTTAATGTGACCCCTTATAGTTACCCCTTTC  200

seq1  CTAACTGCCCATCAGGGTGTTCATTGATTTGTTTTCCCCTTTCAGAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CTAACTGCCCATCAGGGTGTTCATTGATTTGTTTTCCCCTTTCAGAAG--  248

seq1  CTTGAAAATAAAATAATTATCACTGATTTGTGTACAACCATGAGAATTTT  300
                                                        
seq2  --------------------------------------------------  248

seq1  CAATAATGTAAGTGTGGGTTTGTGTTTTGTAAGGCCATTTCACCTCTGTC  350
                                               |||||||||
seq2  -----------------------------------------ACCTCTGTC  257

seq1  ATTAGTTCAAGGACTTTTTGCTGCCTTCAAGTTGGGACTGTTGTAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTCAAGGACTTTTTGCTGCCTTCAAGTTGGGACTGTTGTAAATAA  307

seq1  AGCTGTTCTGTGCATTCATTCATTTGTTCCTCTCTTCTGTGTGTCAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTCTGTGCATTCATTCATTTGTTCCTCTCTTCTGTGTGTCAATAT  357

seq1  TCAGGCATCAAAGGCCTGCATGCCTCATTTGTACATGTGAGAGTTTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCATCAAAGGCCTGCATGCCTCATTTGTACATGTGAGAGTTTATCT  407

seq1  TCTAGATATGATGGAATAAGAAAGTCAAAAAGGAAGGTACATACTACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATATGATGGAATAAGAAAGTCAAAAAGGAAGGTACATACTACCTA  457

seq1  CATGTATCAAGAGAAGGCACATATGTCATGCCACACAATGCTATGTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATCAAGAGAAGGCACATATGTCATGCCACACAATGCTATGTCAGA  507

seq1  CAGATTATTGTTAAGTGGGAGACAGAAAAACATGAGGAAGAGGCCTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATTGTTAAGTGGGAGACAGAAAAACATGAGGAAGAGGCCTCACC  557

seq1  CTTTCTTGGGAACTCCTTGGGCACAGGAAACTGTTCTTGGATTTACTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGGGAACTCCTTGGGCACAGGAAACTGTTCTTGGATTTACTGGT  607

seq1  TTGAATAAGCTCAACAGTTTTCAGATTTGGGACCAGGCTTGGTCCTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAGCTCAACAGTTTTCAGATTTGGGACCAGGCTTGGTCCTGAGG  657

seq1  TGGTATTTTGGAAAAATGCTGGATAGGGTGTTAAAAGTGAAGATGTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTTGGAAAAATGCTGGATAGGGTGTTAAAAGTGAAGATGTTCTG  707

seq1  TTTTCTCAGAATCATTGCTTTGTCTGTGAGAGCTTTGTCCCTGGGAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGAATCATTGCTTTGTCTGTGAGAGCTTTGTCCCTGGGAAGGC  757

seq1  CATTTGGCCTTCCACAGAACAAGTCAGGCTTCTTTAGGAAGCCCTAGGTG  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATTTGGCCTTCCACAGAACAAGTCAGGCTTCTTTAGGAAGCCCTAGGCG  807

seq1  TTGTCATATCACATCAGGAAACAGTTGAACAGAGCAATGGCTCTATGCCT  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGTCATATCACATCA-GAAACAGTTGAACAGAGCAATGGCTCTATGCCT  856

seq1  GTCAGTCTTAAACACTGACCAATGTATCTTGTTTGTATAACTTTCAGTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTTAAACACTGACCAATGTATCTTGTTTGTATAACTTTCAGTCC  906

seq1  CTCAGCCTGCTCACTAGCACTTGCTCTCTTTGATGTGTCTTCTCAATTTT  1050
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCAGCCTGCTCACTAGCACTTGCTCTC-TTGATGTGTCTTCTCAATTTT  955

seq1  -TGCCAGTAATA-TACAGAATAAGAGTTGTGTTACTA-TGTTGCATGCCA  1097
        |||||||||| |||||||||||||||||||||||| ||||||||||| 
seq2  GGGCCAGTAATATTACAGAATAAGAGTTGTGTTACTATTGTTGCATGCCC  1005

seq1  ATTTAACAAATGGAGTTCATCATTTTAATTTACACAGCTTT-CCAGTCCT  1146
      ||||||| |||||||||||||| |||||||||||||||||| ||||||||
seq2  ATTTAAC-AATGGAGTTCATCA-TTTAATTTACACAGCTTTCCCAGTCCT  1053

seq1  C-TCTCCCTTTTACTTGTTGGGTTGCTGTTTTGTGTTTGAGTTTATAAGA  1195
      | |||||| ||||| |||  || ||||||||   | ||||| ||||||||
seq2  CTTCTCCC-TTTAC-TGT--GGCTGCTGTTT--GGGTTGAGCTTATAAGA  1097

seq1  AAGAGTGGGCATGCATATGGCACAGC-ATGCATGTAG-AGATCAG-AGGA  1242
      |||||| ||||||||| ||||||||| |||||||||| ||||||| ||||
seq2  AAGAGTTGGCATGCAT-TGGCACAGCAATGCATGTAGAAGATCAGAAGGA  1146

seq1  CAATCCTGAGCCAT  1256
      ||||||||| ||||
seq2  CAATCCTGA-CCAT  1159

seq1: chr7_32951921_32952460
seq2: B6Ng01-230C04.g_341_882 (reverse)

seq1  TGTTTC-TTGAAAGCTGGAACCTAAGCTTGTATATTGATTC-GAATTTTT  48
      |||||| |||||||| ||||||||||||||||||||||||| ||||||||
seq2  TGTTTCTTTGAAAGCAGGAACCTAAGCTTGTATATTGATTCGGAATTTTT  50

seq1  ATTAGATATTTTCAATATTTACATCT-CCAATGCTATCCCAAACGTTCCC  97
      ||||| ||||||||||| |||||||| |||||||||||||||||||||||
seq2  ATTAGGTATTTTCAATA-TTACATCTCCCAATGCTATCCCAAACGTTCCC  99

seq1  TATACCCTTCCCTGACCCTCCTCTCCTACCCTCCTAGTCCCTCTTCTTGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCTTCCCTGACCCTCCTCTCCTACCCTCCTAGTCCCTCTTCTTGG  149

seq1  TCCTGGTGTTCCGCTGTACATATAAAGTTTGCAAGACCAAAGGGCCTTTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGTTCCGCTGTACATATAAAGTTTGCAAGACCAAAGGGCCTTTT  199

seq1  GTCCCAATGATGGCTGACTAGGCCATCTTCTGCTACATATGCAGGTAGAA  247
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCCCAATGATGGCTGACTAGGCCATCTTCTGCTACATATGCAGCTAGAA  249

seq1  ACACAAGCTCTGGGGGTACTGGGTACTTTATATTGTTTTTCTCCTATAGG  297
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGCTCTGGGGGTACTGGGTACTTTATATTGTTTTTCTCCTATAGG  299

seq1  GTTGCAGACTCCTTAATCTCCTTGGGTATTTTCTCTAGCTCCTTCATTCG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGACTCCTTAATCTCCTTGGGTATTTTCTCTAGCTCCTTCATTCG  349

seq1  GGGCCCAGTGTTCCATGCAATACACGACTGTGAACAATCACTTCTGTATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCAGTGTTCCATGCAATACACGACTGTGAACAATCACTTCTGTATT  399

seq1  AGCAAGGCTCTGGCATAGCCTATCAAGAGACAGCTATATCAGGGGTCTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCTCTGGCATAGCCTATCAAGAGACAGCTATATCAGGGGTCTTT  449

seq1  CAGCAAAATCTTGCTGGCATTTATAATAGAGTCTGTGTTTGGTTGCTGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAATCTTGCTGGCATTTATAATAGAGTCTGTGTTTGGTTGCTGAT  499

seq1  TATGAGATGGATTCCCGGTTGGGGAAGTCTCTTGATGGCCCAT  540
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATGGATTCCCGGTTGGGGAAGTCTCTTGATGGCCCAT  542