BAC Information

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BAC

Clone NameB6Ng01-233C20
Chromosome7 (Build37)
Map Location 141,941,414 - 142,077,131
singlet/doubletdoublet
Overlap geneDock1, B830028B13Rik
Upstream geneDhx32, Fank1, Adam12, A130023I24Rik, 4933400E14Rik, LOC100043248, LOC100043699, LOC668750
Downstream geneEG668693, LOC100043254, Foxi2, Clrn3, Ptpre, Mki67
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233C20.bB6Ng01-233C20.g
ACCGA045314GA045315
length1,1551,126
definitionB6Ng01-233C20.b B6Ng01-233C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,075,974 - 142,077,131)(141,941,414 - 141,942,534)
sequence
gaattctgaataatgtattttatcataatcaccccctactctaactcctc
tcacttctactttcaaagctcaccttccaccaccaccaccactaccccgc
cccctacacatcaagaccagttggtgctgcccatttcttcttggatgtgt
ggactacctcccaaggctcaggagtcactgaggcaccatgaagagtctaa
gagccagaggcagggaatacaaagaaacatcctctttgctcaacagggca
gctgcacatatgaattcacagccactgagacaacatgtacagtctttgtg
taaacttaagccacacaaaatcccagcatgaacaagagacgtggctacaa
agtccttcccctaactgaagagctattggcaaatgtcagctgccagaaga
gagacaatcagctgtgagaggagcccctgtttaatcggcatcttactgtt
tgaggcagggtttctctctgaacccagagctcattgattggcaggttggc
tggctgatgagctccagggaactgcccagactctgccccgtacccagccc
tggaattacagacatacaccaccacacgtggctcttaagtgggagctgtg
ggtggaactcacatcttcatgcttgcctggcaagccccttcttcactgag
gcttgcctgagaaagtaacttatttttccaaagaaaatgagtcaatctgg
aatagatcacagtgcttgatagtaaagctatcatggttacctgtgtatta
ctgaacagtgcagttatactataattctactctgaatgaacatagccatg
ataggcagtcccgggatctcttgggccacacattaaccctgttgttctat
ctttctagtgtggagctggattttaagcaacaagaagacaaactgcagcc
tgtgctgagaaaaactgcaccctgtcgaggaaactcaggtcatcccttcg
ccttaccctcaggagactcactcctccacgcccaagcaaaaatccaaaac
tgagtccaaaagcatggcagtggaacttctggtttttttagaactcgtgg
gctcggagacccagacgttcttttaaacccactgggattaagtggagtcc
ttttccgatcgaataggatcagggaaacctgcggtgtcacgcgtgcctcc
tgctt
gaattcttgagagatgagcctctttcttcctgctgtgtgattggctggtg
agaccctgtatgctacagtgctgcccagttcccacatgagttgctgcaga
ggccctgggaggcctctggtcttaggtagttggaccatgggaggtccatt
atcatggcctcagagagagagagagatctctgctgctttcacagaaattc
cccactgactcaggcctagtgcaggctcctccatactgcctcctggcacc
acactctggcctctgcagtcgcctgaggaccagctttctgacttgatagc
tggagtatctacttatatttctttttactttctgccccgagactgaggat
gaatattttatcttgtgcttttatagtgtagacttttttctttaattaat
taattattcattcactttacatcccagtcacagccctctcccttccttct
ttcttctcagtcccaccctcacacatccctcccctggttatccccttacc
tgctccttccagaagggacccccccccccactcctgccttgggtactacc
cccttcctgggatatcaagtcatagcaggaattagcacattttctcccac
tgagccctgaccaggcagtccagctaggggaaggggatgcagtggcaggc
cacagagtctgatctgagacagcccccatcctaatttttagtagaccctc
atgaagaccaagctgcacatctgttacaaatgtgtaaaggggcctaggtc
cagcccctgcatgattttggtgggtagtttagtctctatgagcctcttac
attttttattggcatatggcagtgctccgaccttccccggtccccttcct
catgcgttggtattgagcatactctggccacgttctccctttcctggccc
agacttggatgcccatagagcacctccaagccacaggttcccattcctgt
taggcagcccccctcctcatacttgagaggaagaccgactttttggtagt
gggattctgccaattcgcatgcagtgccttattgtccacaatgcaagatt
ttatttgaggcgttttccaagaaccatcttcttgccgtcttggtgttcaa
cagagctaaaatttaaaatgagaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_142075974_142077131
seq2: B6Ng01-233C20.b_47_1201 (reverse)

seq1  AAGCAGGGAGCACGCGTTGGCACCGCA-GTTTCCTTGATCCTATCCGATT  49
      |||||||  ||||||| || ||||||| |||||| ||||||||| ||| |
seq2  AAGCAGGAGGCACGCG-TGACACCGCAGGTTTCCCTGATCCTATTCGA-T  48

seq1  CGGAAAAGGACT-CACTTAAATCCCAGTGGGTTTAAAAGACGGTCTGGGT  98
      |||||||||||| ||||| |||||||||||||||||||||  ||||||||
seq2  CGGAAAAGGACTCCACTT-AATCCCAGTGGGTTTAAAAGAACGTCTGGGT  97

seq1  CTTCCCGAGCCCACGAGTCTTAAAGAAACCAGAGTTTCCACCTGCCATGC  148
      ||  ||||||||||||||  |||| ||||||||  ||||| |||||||||
seq2  CT--CCGAGCCCACGAGTTCTAAAAAAACCAGAAGTTCCA-CTGCCATGC  144

seq1  TTTTTGGACTCAGTTTTGGATTTTTGCTTGGGCGTGGAGGAGTGAGTCTC  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTGGACTCAGTTTTGGATTTTTGCTTGGGCGTGGAGGAGTGAGTCTC  193

seq1  CTGAGGGTAAGGCGAAGGGATGACCTGAGTTTCCTCGACAGGGTGCAG-T  247
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGAGGGTAAGGCGAAGGGATGACCTGAGTTTCCTCGACAGGGTGCAGTT  243

seq1  TTTCTCAGCACAGGCTGCAGTTTGTCTTCTTGTTGCTTAAAATCCAGCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGCACAGGCTGCAGTTTGTCTTCTTGTTGCTTAAAATCCAGCTC  293

seq1  CACACTAGAAAGATAGAAC-ACAGGGTTAATGTGTGGCCCAAGAGATCCC  346
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CACACTAGAAAGATAGAACAACAGGGTTAATGTGTGGCCCAAGAGATCCC  343

seq1  GGGACTGCCTATCATGGCTATGTTCATTCAGAGTAGAATTATAGTATAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGCCTATCATGGCTATGTTCATTCAGAGTAGAATTATAGTATAAC  393

seq1  TGCACTGTTCAGTAATACACAGGTAACCATGATAGCTTTACTATCAAGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTTCAGTAATACACAGGTAACCATGATAGCTTTACTATCAAGCA  443

seq1  CTGTGATCTATTCCAGATTGACTCATTTTCTTTGGAAAAATAAGTTACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCTATTCCAGATTGACTCATTTTCTTTGGAAAAATAAGTTACTT  493

seq1  TCTCAGGCAAGCCTCAGTGAAGAAGGGGCTTGCCAGGCAAGCATGAAGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCAAGCCTCAGTGAAGAAGGGGCTTGCCAGGCAAGCATGAAGAT  543

seq1  GTGAGTTCCACCCACAGCTCCCACTTAAGAGCCACGTGTGGTGGTGTATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCACCCACAGCTCCCACTTAAGAGCCACGTGTGGTGGTGTATG  593

seq1  TCTGTAATTCCAGGGCTGGGTACGGGGCAGAGTCTGGGCAGTTCCCTGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATTCCAGGGCTGGGTACGGGGCAGAGTCTGGGCAGTTCCCTGGA  643

seq1  GCTCATCAGCCAGCCAACCTGCCAATCAATGAGCTCTGGGTTCAGAGAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCAGCCAGCCAACCTGCCAATCAATGAGCTCTGGGTTCAGAGAGA  693

seq1  AACCCTGCCTCAAACAGTAAGATGCCGATTAAACAGGGGCTCCTCTCACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGCCTCAAACAGTAAGATGCCGATTAAACAGGGGCTCCTCTCACA  743

seq1  GCTGATTGTCTCTCTTCTGGCAGCTGACATTTGCCAATAGCTCTTCAGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTGTCTCTCTTCTGGCAGCTGACATTTGCCAATAGCTCTTCAGTT  793

seq1  AGGGGAAGGACTTTGTAGCCACGTCTCTTGTTCATGCTGGGATTTTGTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAGGACTTTGTAGCCACGTCTCTTGTTCATGCTGGGATTTTGTGT  843

seq1  GGCTTAAGTTTACACAAAGACTGTACATGTTGTCTCAGTGGCTGTGAATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAGTTTACACAAAGACTGTACATGTTGTCTCAGTGGCTGTGAATT  893

seq1  CATATGTGCAGCTGCCCTGTTGAGCAAAGAGGATGTTTCTTTGTATTCCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGCAGCTGCCCTGTTGAGCAAAGAGGATGTTTCTTTGTATTCCC  943

seq1  TGCCTCTGGCTCTTAGACTCTTCATGGTGCCTCAGTGACTCCTGAGCCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGGCTCTTAGACTCTTCATGGTGCCTCAGTGACTCCTGAGCCTT  993

seq1  GGGAGGTAGTCCACACATCCAAGAAGAAATGGGCAGCACCAACTGGTCTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTAGTCCACACATCCAAGAAGAAATGGGCAGCACCAACTGGTCTT  1043

seq1  GATGTGTAGGGGGCGGGGTAGTGGTGGTGGTGGTGGAAGGTGAGCTTTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTAGGGGGCGGGGTAGTGGTGGTGGTGGTGGAAGGTGAGCTTTGA  1093

seq1  AAGTAGAAGTGAGAGGAGTTAGAGTAGGGGGTGATTATGATAAAATACAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAGTGAGAGGAGTTAGAGTAGGGGGTGATTATGATAAAATACAT  1143

seq1  TATTCAGAATTC  1158
      ||||||||||||
seq2  TATTCAGAATTC  1155

seq1: chr7_141941414_141942534
seq2: B6Ng01-233C20.g_66_1191

seq1  GAATTCTTGAGAGATGAGCCTCTTTCTTCCTGCTGTGTGATTGGCTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGAGATGAGCCTCTTTCTTCCTGCTGTGTGATTGGCTGGTG  50

seq1  AGACCCTGTATGCTACAGTGCTGCCCAGTTCCCACATGAGTTGCTGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGTATGCTACAGTGCTGCCCAGTTCCCACATGAGTTGCTGCAGA  100

seq1  GGCCCTGGGAGGCCTCTGGTCTTAGGTAGTTGGACCATGGGAGGTCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGGAGGCCTCTGGTCTTAGGTAGTTGGACCATGGGAGGTCCATT  150

seq1  ATCATGGCCTCAGAGAGAGAGAGAGATCTCTGCTGCTTTCACAGAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGCCTCAGAGAGAGAGAGAGATCTCTGCTGCTTTCACAGAAATTC  200

seq1  CCCACTGACTCAGGCCTAGTGCAGGCTCCTCCATACTGCCTCCTGGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGACTCAGGCCTAGTGCAGGCTCCTCCATACTGCCTCCTGGCACC  250

seq1  ACACTCTGGCCTCTGCAGTCGCCTGAGGACCAGCTTTCTGACTTGATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTGGCCTCTGCAGTCGCCTGAGGACCAGCTTTCTGACTTGATAGC  300

seq1  TGGAGTATCTACTTATATTTCTTTTTACTTTCTGCCCCGAGACTGAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTATCTACTTATATTTCTTTTTACTTTCTGCCCCGAGACTGAGGAT  350

seq1  GAATATTTTATCTTGTGCTTTTATAGTGTAGACTTTTTTCTTTAATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTTATCTTGTGCTTTTATAGTGTAGACTTTTTTCTTTAATTAAT  400

seq1  TAATTATTCATTCACTTTACATCCCAGTCACAGCCCTCTCCCTTCCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTCATTCACTTTACATCCCAGTCACAGCCCTCTCCCTTCCTTCT  450

seq1  TTCTTCTCAGTCCCACCCTCACACATCCCTCCCCTGGTTATCCCCTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCAGTCCCACCCTCACACATCCCTCCCCTGGTTATCCCCTTACC  500

seq1  TGCTCCTTCCAGAAGGGACCCCCCCCCCCCACTCCTGCCTTGGGTACTAC  550
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCTCCTTCCAGAAGGGA-CCCCCCCCCCCACTCCTGCCTTGGGTACTAC  549

seq1  CCCCTTCCTGGGATATCAAGTCATAGCAGGAATTAGCACATTTTCTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCTGGGATATCAAGTCATAGCAGGAATTAGCACATTTTCTCCCA  599

seq1  CTGAGCCCTGACCAGGCAGTCCAGCTAGGGGAAGGGGATGCAGTGGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCTGACCAGGCAGTCCAGCTAGGGGAAGGGGATGCAGTGGCAGG  649

seq1  CCACAGAGTCTGATCTGAGACAGCCCCCATCCTAATTTTTAGTAGACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGTCTGATCTGAGACAGCCCCCATCCTAATTTTTAGTAGACCCT  699

seq1  CATGAAGACCAAGCTGCACATCTGTTACAAATGTGT-AAGGGGCCTAGGT  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATGAAGACCAAGCTGCACATCTGTTACAAATGTGTAAAGGGGCCTAGGT  749

seq1  CCAGCCCCTGCATGATTTTGGTGGGTAGTTTAGTCTCTATGAGCCTCTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCTGCATGATTTTGGTGGGTAGTTTAGTCTCTATGAGCCTCTTA  799

seq1  CATTTTTTATTGGCATATGGCAGTGCTCCGACCTTCCCCGGTCCCCTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTATTGGCATATGGCAGTGCTCCGACCTTCCCCGGTCCCCTTCC  849

seq1  TCATGCGTTGGTATTGAGCATACTCTGGCCACGTTCTCCC-TTCCTGGCC  898
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCATGCGTTGGTATTGAGCATACTCTGGCCACGTTCTCCCTTTCCTGGCC  899

seq1  CAGACTTGGGATGCCCATAGAGCACCTCCCAGCCACAGGTTCCCATTCCT  948
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGACTT-GGATGCCCATAGAGCACCTCCAAGCCACAGGTTCCCATTCCT  948

seq1  GTTAGGCAG-CCCCCTCCTCATACTTGAGAAGGAAGACCGACTTTTTGGT  997
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  GTTAGGCAGCCCCCCTCCTCATACTTGAG-AGGAAGACCGACTTTTTGGT  997

seq1  AGTGGGATTCTGCCCATTCGCATGCAGTGCCT--ATGTCCAC-ATGCAAA  1044
      |||||||||||||| |||||||||||||||||   ||||||| |||| ||
seq2  AGTGGGATTCTGCCAATTCGCATGCAGTGCCTTATTGTCCACAATGC-AA  1046

seq1  GATTTAATTTTGAGGCGTTTTCC-AGAACAATC-TCTGCCCGTCT--GTG  1090
      ||||| | ||||||||||||||| ||||| ||| |||  ||||||  |||
seq2  GATTTTA-TTTGAGGCGTTTTCCAAGAACCATCTTCTTGCCGTCTTGGTG  1095

seq1  -TCAACAGAGCTAAAATTTTAAAATGAGAAAG  1121
       ||||||||||||||| |||||||||||||||
seq2  TTCAACAGAGCTAAAA-TTTAAAATGAGAAAG  1126