BAC Information

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BAC

Clone NameB6Ng01-235E12
Chromosome7 (Build37)
Map Location 60,093,056 - 60,223,341
singlet/doubletdoublet
Overlap geneLOC100040692
Upstream geneLOC100040608, Gas2, 1700015G11Rik, EG668783, EG620782
Downstream geneGm1865, LOC100040718, LOC668789
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235E12.bB6Ng01-235E12.g
ACCGA046795GA046796
length1,1851,078
definitionB6Ng01-235E12.b B6Ng01-235E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,093,056 - 60,094,234)(60,222,271 - 60,223,341)
sequence
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatc
agtctgtcttaaaggcaacccttagtgtatcttgtatccaaatcctcttg
ttgaggggggtcatataaccatattcctagacaccactaaaatatcaact
agggttagtgctctttatctcaagataattttcaagctatttttggttta
aagcattgaaaaaatatttcaaaaaaaaactagttcatctgcaatatggt
gattttatcattggctattctagtttttcagttggttttgtaggaattat
atagtttgcaaacagacttggaaaaacttcagctcagtaatttgtattgg
tgctaagatgccgcagccatctttaagcccactctagcagggtgtttggt
ccattatttcatgtgggagggtgaaagacagacctctacattagtttata
aaattaattatttaaacacacaaattgaaatttaattcaagttattatat
tagtgatgatgataccagtcagacttcaatccaaccaactgtcaaacaaa
ttgaactactgtctctatagatacagtattgttcaaagcatgtttacatt
actctcaaatttgcatggtgtggtagactcaaagagtattccataagtta
cacacgctcttcaactgatgccttttgactgctgtatcactaatagttaa
gtgggcagatattcttttatcattgcataattgaggaaccagaaacctgg
tagataaaatgtattctgacacataaccttgaaagttcagagaaatatgt
atgaacataagaaattaaaataaatggcatgttcatctaattttttgtgt
aataattaatgtctgtcaggaaataactccctcagggtctctaagtcaca
ttgaatttaaacctgcttctcatctctaagatttttttaaatatgtcatt
tggaacagggagttgaagtttagactaaagatggatgactattttttggg
ttgtgacctgactattatctggagtgacctatgatccaggaatggaggca
tatctctggtgagaatcttctttctgtttgaagtgtgggtgaatcaactg
gaaaaacacacatcttggatcccgaatcttgagtctggtagacactttaa
tcttgggctcaaccctttcctcctgggaagtctat
gaattctcctgagccttgtctgtaaaagcgaatctgtcacagattctatt
aaaatccgaagcagacaatcccaggaagatcacctgctagttgttagctt
ctattatggctcctgaaacatccttttgtcctactttgtcttttctcccc
tgcctttgaatggtgggcctcaaggggattcagagtatttgaaaatcctt
cctaaggtgggttttgaaaaatctaagcctacagaaaaaaatggtatctt
attgtgtgcaagtgatttaacatagagttctgcctaatcaaagaaaaatt
tggagaatgaaactaatatgacagttcttaattacattaatgtttgtcaa
acacccaaattacaagtgttgacacatgttctgctataaataactgagct
tcacaattagcagattttataacctgttttccagataaatgtttcaatta
aacaaaatgttaaaaaatattgaaccaccatcctagaacacaccaatacc
tacgacctactttttctgtatattacattacactttatttatattgagaa
gtagttttcagtgatagagtttatactgttggaattacaataaaatgata
ttaacctgtgatatctgaatgctgttctaattgataaaagtgtttgtgca
ccaaccattaggcagtgtttggagaatcctgccaaagaggagaaggaagg
attgtaggagccagatgggtcaaggacactacaataaaagatagaaaatc
aactaacctggacccatagggactaatacaggttgaaccaccaactaaac
ctaggccctctgcatatatgatacagttctgtagctttgtcttcagataa
tacaccagaagcaggaaaaggggctgtctctgtctgtggtgcttgacttt
gggactctttccctctactgggttgtctcatctagcctcagtaagacagg
attggttgctctactgcaactagctgtgcagctctggttggagtccctcc
tcttttctgaagagaaaaagaagaagattggataaggaatgaaaggaagt
tgggggaagaagaaataaaagaggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_60093056_60094234
seq2: B6Ng01-235E12.b_42_1226

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAACACCTGAAAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAACACCTGAAAAAATC  50

seq1  AGTCTGTCTTAAAGGCAACCCTTAGTGTATCTTGTATCCAAATCCTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTCTTAAAGGCAACCCTTAGTGTATCTTGTATCCAAATCCTCTTG  100

seq1  TTGAGGGGGGGTCATATAACCATATTCCTAGACACCACTAAAATATCAAC  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGA-GGGGGGTCATATAACCATATTCCTAGACACCACTAAAATATCAAC  149

seq1  TAGGGTTAGTGCTCTTTATCTCAAGATAATTTTCAAGCTATTTTTGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTAGTGCTCTTTATCTCAAGATAATTTTCAAGCTATTTTTGGTTT  199

seq1  AAAGCATTGAAAAAATATTTCAAAAAAAAACTAGTTCATCTGCAATATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTGAAAAAATATTTCAAAAAAAAACTAGTTCATCTGCAATATGG  249

seq1  TGATTTTATCATTGGCTATTCTAGTTTTTCAGTTGGTTTTGTAGGAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTATCATTGGCTATTCTAGTTTTTCAGTTGGTTTTGTAGGAATTA  299

seq1  TATAGTTTGCAAACAGACTTGGAAAAACTTCAGCTCAGTAATTTGTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTGCAAACAGACTTGGAAAAACTTCAGCTCAGTAATTTGTATTG  349

seq1  GTGCTAAGATGCCGCAGCCATCTTTAAGCCCACTCTAGCAGGGTGTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAGATGCCGCAGCCATCTTTAAGCCCACTCTAGCAGGGTGTTTGG  399

seq1  TCCATTATTTCATGTGGGAGGGTGAAAGACAGACCTCTACATTAGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATTTCATGTGGGAGGGTGAAAGACAGACCTCTACATTAGTTTAT  449

seq1  AAAATTAATTATTTAAACACACAAATTGAAATTTAATTCAAGTTATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATTATTTAAACACACAAATTGAAATTTAATTCAAGTTATTATA  499

seq1  TTAGTGATGATGATACCAGTCAGACTTCAATCCAACCAACTGTCAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGATGATGATACCAGTCAGACTTCAATCCAACCAACTGTCAAACAA  549

seq1  ATTGAACTACTGTCTCTATAGATACAGTATTGTTCAAAGCATGTTTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTACTGTCTCTATAGATACAGTATTGTTCAAAGCATGTTTACAT  599

seq1  TACTCTCAAATTTGCATGGTGTGGTAGACTCAAAGAGTATTCCATAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCAAATTTGCATGGTGTGGTAGACTCAAAGAGTATTCCATAAGTT  649

seq1  ACACACGCTCTTCAACTGATGCCTTTTGACTGCTGTATCACTAATAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGCTCTTCAACTGATGCCTTTTGACTGCTGTATCACTAATAGTTA  699

seq1  AGTGGGCAGATATTCTTTTATCATTGCATAATTGAGGAACCAGAAACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCAGATATTCTTTTATCATTGCATAATTGAGGAACCAGAAACCTG  749

seq1  GTAGATAAAATGTATTCTGACACATAACCTTGAAAGTTCAGAGAAATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAAAATGTATTCTGACACATAACCTTGAAAGTTCAGAGAAATATG  799

seq1  TATGAACATAAGAAATTAAAATAAATGGCATGTTCATCTAATTTTTTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACATAAGAAATTAAAATAAATGGCATGTTCATCTAATTTTTTGTG  849

seq1  TAATAATTAATGTCTGTCAGGAAATAACTCCCTCAGGGTCTCTAAGTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTAATGTCTGTCAGGAAATAACTCCCTCAGGGTCTCTAAGTCAC  899

seq1  A-TGAATTTAAAACCTGCTTCTCATCTCTAAAGATTTTTTTAAATATGTC  949
      | ||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  ATTGAATTT-AAACCTGCTTCTCATCTCT-AAGATTTTTTTAAATATGTC  947

seq1  ATTT-GAACAGGGAGTTGAAGTTTAGACTATAGTATGATGACTATTTTTT  998
      |||| ||||||||||||||||||||||||| ||   ||||||||||||||
seq2  ATTTGGAACAGGGAGTTGAAGTTTAGACTAAAGATGGATGACTATTTTTT  997

seq1  GGTTGTTAACTTGACTATTATCT-GAATGAACTATGATCCAGGAATGGAG  1047
      || |  | || |||||||||||| || ||| |||||||||||||||||| 
seq2  GGGTTGTGACCTGACTATTATCTGGAGTGACCTATGATCCAGGAATGGA-  1046

seq1  GGCATATCT---GTGAGAATCTTTCTTCTTGGTTTGAA--GTGGGTGAAT  1092
      |||||||||   |||||||||||  ||||  |||||||  ||||||||||
seq2  GGCATATCTCTGGTGAGAATCTTCTTTCT--GTTTGAAGTGTGGGTGAAT  1094

seq1  CAACTGG-AAAACACACATCTTTGATCCAG-ATCTTGAGTCTGGAAGACA  1140
      ||||||| |||||||||||||| ||||| | ||||||||||||| |||||
seq2  CAACTGGAAAAACACACATCTTGGATCCCGAATCTTGAGTCTGGTAGACA  1144

seq1  CACCTTTAATCT--GGCTCAAACCTT--CCCCT-GGAAGTCTAT  1179
         |||||||||  ||||||| ||||  | ||| ||||||||||
seq2  ---CTTTAATCTTGGGCTCAACCCTTTCCTCCTGGGAAGTCTAT  1185

seq1: chr7_60222271_60223341
seq2: B6Ng01-235E12.g_68_1145 (reverse)

seq1  TTCTCCTCTCT--ATTCCTCT--CCCCAACTTCCTTTCA-TCCCTATCCA  45
      ||||||||| |   ||| |||  |||||||||||||||| ||| ||||||
seq2  TTCTCCTCTTTTATTTCTTCTTCCCCCAACTTCCTTTCATTCCTTATCCA  50

seq1  CTCCTTCTTC-TTTTCTCTTCAGAAAAGAGGA-GGACTCCAACCAGAGCT  93
       | ||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  AT-CTTCTTCTTTTTCTCTTCAGAAAAGAGGAGGGACTCCAACCAGAGCT  99

seq1  GGCACAGCTAGTTGCAGTAGAGCAACCAATCCTGTCTTACTGAGGCTAGA  143
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GCACAGCTAGTTGCAGTAGAGCAACCAATCCTGTCTTACTGAGGCTAGA  148

seq1  TGAGACAACCCAGTAGAGGG-AAGAGTCCCAAAGTCAAGCACCACAGACA  192
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAGACAACCCAGTAGAGGGAAAGAGTCCCAAAGTCAAGCACCACAGACA  198

seq1  GAGACAGCCCC-TTTCCTGCTTCTGGTGTATTATCTGAAGACAAAGCTAC  241
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCCCCTTTTCCTGCTTCTGGTGTATTATCTGAAGACAAAGCTAC  248

seq1  AGAACTGTATCATATATGCAGAGGGCCTAGGTTTAGTTGGTGGTTCAACC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTATCATATATGCAGAGGGCCTAGGTTTAGTTGGTGGTTCAACC  298

seq1  TGTATTAGTCCCTATGGGTCCAGGTTAGTTGATTTTCTATCTTTTATTGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAGTCCCTATGGGTCCAGGTTAGTTGATTTTCTATCTTTTATTGT  348

seq1  AGTGTCCTTGACCCATCTGGCTCCTACAATCCTTCCTTCTCCTCTTTGGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTTGACCCATCTGGCTCCTACAATCCTTCCTTCTCCTCTTTGGC  398

seq1  AGGATTCTCCAAACACTGCCTAATGGTTGGTGCACAAACACTTTTATCAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTCCAAACACTGCCTAATGGTTGGTGCACAAACACTTTTATCAA  448

seq1  TTAGAACAGCATTCAGATATCACAGGTTAATATCATTTTATTGTAATTCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACAGCATTCAGATATCACAGGTTAATATCATTTTATTGTAATTCC  498

seq1  AACAGTATAAACTCTATCACTGAAAACTACTTCTCAATATAAATAAAGTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATAAACTCTATCACTGAAAACTACTTCTCAATATAAATAAAGTG  548

seq1  TAATGTAATATACAGAAAAAGTAGGTCGTAGGTATTGGTGTGTTCTAGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAATATACAGAAAAAGTAGGTCGTAGGTATTGGTGTGTTCTAGGA  598

seq1  TGGTGGTTCAATATTTTTTAACATTTTGTTTAATTGAAACATTTATCTGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTCAATATTTTTTAACATTTTGTTTAATTGAAACATTTATCTGG  648

seq1  AAAACAGGTTATAAAATCTGCTAATTGTGAAGCTCAGTTATTTATAGCAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGTTATAAAATCTGCTAATTGTGAAGCTCAGTTATTTATAGCAG  698

seq1  AACATGTGTCAACACTTGTAATTTGGGTGTTTGACAAACATTAATGTAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGTCAACACTTGTAATTTGGGTGTTTGACAAACATTAATGTAAT  748

seq1  TAAGAACTGTCATATTAGTTTCATTCTCCAAATTTTTCTTTGATTAGGCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACTGTCATATTAGTTTCATTCTCCAAATTTTTCTTTGATTAGGCA  798

seq1  GAACTCTATGTTAAATCACTTGCACACAATAAGATACCATTTTTTTCTGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTATGTTAAATCACTTGCACACAATAAGATACCATTTTTTTCTGT  848

seq1  AGGCTTAGATTTTTCAAAACCCACCTTAGGAAGGATTTTCAAATACTCTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAGATTTTTCAAAACCCACCTTAGGAAGGATTTTCAAATACTCTG  898

seq1  AATCCCCTTGAGGCCCACCATTCAAAGGCAGGGGAGAAAAGACAAAGTAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTTGAGGCCCACCATTCAAAGGCAGGGGAGAAAAGACAAAGTAG  948

seq1  GACAAAAGGATGTTTCAGGAGCCATAATAGAAGCTAACAACTAGCAGGTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAGGATGTTTCAGGAGCCATAATAGAAGCTAACAACTAGCAGGTG  998

seq1  ATCTTCCTGGGATTGTCTGCTTCGGATTTTAATAGAATCTGTGACAGATT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTGGGATTGTCTGCTTCGGATTTTAATAGAATCTGTGACAGATT  1048

seq1  CGCTTTTACAGACAAGGCTCAGGAGAATTC  1071
      ||||||||||||||||||||||||||||||
seq2  CGCTTTTACAGACAAGGCTCAGGAGAATTC  1078