BAC Information

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BAC

Clone NameB6Ng01-236A17
Chromosome7 (Build37)
Map Location 5,434,529 - 5,435,679
singlet/doubletsinglet
Overlap geneEG665255
Upstream genePpp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071
Downstream geneEG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236A17.bB6Ng01-236A17.g
ACCGA047362GA047363
length1,1651,187
definitionB6Ng01-236A17.b B6Ng01-236A17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgatataaatattaactcttaattgtttttatatctaaaaca
atttcagtaaaataatttaaaaaatattttcatgtgtagtgtatgttgga
atccatgacttcaaaagacatcttttctgagtaggttgcttggttctact
acatgcatcatgggaataaactcagattgtaggccttggccacaagtgat
ttaactattgtataatctcacaggcataatatttcttctgagaactttaa
ttcattatattgaatgaagaaaacataattgaaaagataactataaactt
tatgcattttgtcaactctaaataattattatagtaattgatgtggtatc
caatatactaaacatgagtcttatcatatatttaacatcattggtcaaca
cttattccatacttcctggactcatatcacacctggcttttcacatggcc
ctctgaatattacatacttaatatcttgtcataaatttgcaaatactttt
gtattctacattaatcttacagagaacatgtaatttgtgtctatcagcct
catggtccatttcagtaggttattatattataatcgcttcttcatggact
cctatatgtatgtggtgtgcataatcatatgtaggacagacatactcaag
aaatatgtctaaattaattctttttaaaattgtgacaaaaatgtaatgta
catgtagttttatagtagattacttattgggaaagtactctagggttttc
cttcaaattgagttttattttttaaagtatttctttgtgaaaatgtaatc
tgccatgaatttgcaatgcgtgagtatgtgggcaaagacacaaaggtata
tgtgtttggtttttaatttacttgttggtttttggtaggattttgttatt
gatttttatgtctacaactagtaaattagaaaagtgatatattttatatt
aaaagttgccttttagttgacgtcatcattctagcatggtaaaagaggga
cacacacacacacacacacacacgcacgcaacacacacacacattatata
ttatttttgtaggatttattcagagcagaataaaaccttacttttgtctc
tcattaagaaatttcatttttcagccaagggcctgccaaatgaaacaccc
aggctgccacctcct
gaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatcattaatcatcagggaaatgcaaatcaaacaaccctgagatt
ccacctcacaccagtcagaatagctaagatcaaaaattcaggtgacagca
gacgctggtgaggatgtggagaaagaggaacactcctccattgttggtgg
gattgtaagcttgtacaaccactctggaaatcagtctggcggttcctcag
aaaattggacatagtactaccagaggatccagcaatacctctcctgggca
tatatccagaagatgtcccatacggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatttacacaatag
agtgctactcagctattaaaaagaatgaatttatgaaattcctagccaaa
tggatggacctggagggcatcattctgagtgaggtaacccaatcacaaag
gaactcacacaatatatactcactgataattggatattagcccagaaact
taggatacccacgatagaagatacaatttgctaaacgcatgaaactcaag
aagaacgaagtgtggacactgtgccccttcttataattgggaacaaaaca
cccatggaaggagttacagagacaaaatttggagctgtgacgaaaggatt
gaccatcttgtgattgccaaatccagggatccatcccataatcagcttcc
aaacgctgacaccattgcatacaatagcaagattttgctgaaaggactca
gatatagctctctcttgtgagactatgccgggacctagcaaacacagaag
tggatgctcacagacagctattggaaggatcacacggcccccaatggagg
agctagagaaagtaccaaggagctaaagggaactgcaaccctataagtgg
acacatatgactaaccagtaccccgtagctcttgttctctagctgcatat
gtatcaaaagatggacttagttggccatcactggtaaagaggaggtcatg
aacttgcaaactttaaattgctcagtacaggcatgccagttcaaaacggg
gacctatggatgtgtgcctactatgacgagcatctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5434529_5435679
seq2: B6Ng01-236A17.b_44_1208

seq1  GAATTCACTGATATAAATATTAACTCTTAATTGTTTTTATATCTAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGATATAAATATTAACTCTTAATTGTTTTTATATCTAAAACA  50

seq1  ATTTCAGTAAAATAATTTAAAAAATATTTTCATGTGTAGTGTATGTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTAAAATAATTTAAAAAATATTTTCATGTGTAGTGTATGTTGGA  100

seq1  ATCCATGACTTCAAAAGACATCTTTTCTGAGTAGGTTGCTTGGTTCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGACTTCAAAAGACATCTTTTCTGAGTAGGTTGCTTGGTTCTACT  150

seq1  ACATGCATCATGGGAATAAACTCAGATTGTAGGCCTTGGCCACAAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATCATGGGAATAAACTCAGATTGTAGGCCTTGGCCACAAGTGAT  200

seq1  TTAACTATTGTATAATCTCACAGGCATAATATTTCTTCTGAGAACTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATTGTATAATCTCACAGGCATAATATTTCTTCTGAGAACTTTAA  250

seq1  TTCATTATATTGAATGAAGAAAACATAATTGAAAAGATAACTATAAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATATTGAATGAAGAAAACATAATTGAAAAGATAACTATAAACTT  300

seq1  TATGCATTTTGTCAACTCTAAATAATTATTATAGTAATTGATGTGGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTTTGTCAACTCTAAATAATTATTATAGTAATTGATGTGGTATC  350

seq1  CAATATACTAAACATGAGTCTTATCATATATTTAACATCATTGGTCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATACTAAACATGAGTCTTATCATATATTTAACATCATTGGTCAACA  400

seq1  CTTATTCCATACTTCCTGGACTCATATCACACCTGGCTTTTCACATGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCCATACTTCCTGGACTCATATCACACCTGGCTTTTCACATGGCC  450

seq1  CTCTGAATATTACATACTTAATATCTTGTCATAAATTTGCAAATACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAATATTACATACTTAATATCTTGTCATAAATTTGCAAATACTTTT  500

seq1  GTATTCTACATTAATCTTACAGAGAACATGTAATTTGTGTCTATCAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTACATTAATCTTACAGAGAACATGTAATTTGTGTCTATCAGCCT  550

seq1  CATGGTCCATTTCAGTAGGTTATTATATTATAATCGCTTCTTCATGGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCCATTTCAGTAGGTTATTATATTATAATCGCTTCTTCATGGACT  600

seq1  CCTATATGTATGTGGTGTGCATAATCATATGTAGGACAGACATACTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATGTATGTGGTGTGCATAATCATATGTAGGACAGACATACTCAAG  650

seq1  AAATATGTCTAAATTAATTCTTTTTAAAATTGTGACAAAAATGTAATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTCTAAATTAATTCTTTTTAAAATTGTGACAAAAATGTAATGTA  700

seq1  CATGTAGTTTTATAGTAGATTACTTATTGGGAAAGTACTCTAGGGTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTTTTATAGTAGATTACTTATTGGGAAAGTACTCTAGGGTTTTC  750

seq1  CTTCAAATTGAGTTTTATTTTTTAAAGTATTTCTTTGTGAAAATGTAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATTGAGTTTTATTTTTTAAAGTATTTCTTTGTGAAAATGTAATC  800

seq1  TGCCATGAATTTGCAATGCGTGAGTATGTGGGCAAAGACAC-AAGGTATA  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCCATGAATTTGCAATGCGTGAGTATGTGGGCAAAGACACAAAGGTATA  850

seq1  TGTGTTTGGTTTTTAATTTACTTGTTGGTTTTTGGTAGGATTTTGTTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGGTTTTTAATTTACTTGTTGGTTTTTGGTAGGATTTTGTTATT  900

seq1  GATTTTTATGTCTACAACTAGTAAATTAGAAAAGTGATATATTTTATATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTATGTCTACAACTAGTAAATTAGAAAAGTGATATATTTTATATT  950

seq1  AAAAGTTGCCTTTTAGTTGACGTCATCATTCTAGCATGGTAAAAGAGGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGCCTTTTAGTTGACGTCATCATTCTAGCATGGTAAAAGAGGGA  1000

seq1  CACACACACACACACACACACACGCACGC-ACACACACACAC---ATATA  1045
      ||||||||||||||||||||||||||||| ||||||||||||   |||||
seq2  CACACACACACACACACACACACGCACGCAACACACACACACATTATATA  1050

seq1  -TATATTTGTAGGATTTA-TCAGAGCAG-ATAAAA-CTTACT----TGTC  1087
       ||| ||||||||||||| ||||||||| |||||| ||||||    | ||
seq2  TTATTTTTGTAGGATTTATTCAGAGCAGAATAAAACCTTACTTTTGTCTC  1100

seq1  TCATT-AGAAATTTCA-TTTTCAGGGCAGGGGCTG-CAAATGAAACA-GC  1133
      ||||| |||||||||| |||||||   |||| ||| |||||||||||  |
seq2  TCATTAAGAAATTTCATTTTTCAGCCAAGGGCCTGCCAAATGAAACACCC  1150

seq1  AGGCTGCCACTCTCTCCT  1151
      ||||||||||   |||||
seq2  AGGCTGCCAC---CTCCT  1165