BAC Information

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BAC

Clone NameB6Ng01-236M04
Chromosome7 (Build37)
Map Location 10,819,926 - 10,820,778
singlet/doubletsinglet
Overlap geneLOC665663
Upstream geneLOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52
Downstream geneV1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236M04.bB6Ng01-236M04.g
ACCGA047900GA047901
length635938
definitionB6Ng01-236M04.b B6Ng01-236M04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaagaaggaagaccaaagtgtcaatattttgatccttcttgg
aagagggaaacaaaatacccactgaaggagttacagagacaaagtcagga
gtagaggctgaaggaataaccatccagagactgtcccacctggtgatcca
tcccataaacaatcaccaaattcagacccttctgttgacagaaacctgtt
atagctgtctcttgagagcttccaacagtgcctgacaaatacagaggtat
cctctatccactattgataaagccctgttgtctcttttactttttgacaa
aatggtaggctcatagcttaccattggactgagcacagagtctccaatga
aggagctagagaaaggacccaagtaactaaaaggttttggagccccatag
gagcaacaacaatatgaactaaccagtattgccagagctcccagagccta
aaccaccaaccaaagagtacacatggtgggactcatggcttcagttgcat
atgtagactagtatgccctaatgggttttcaatgggatgaaagacccttg
gtcctgtgaaagctctttgacccagtgtaggggaatgccagggccaggaa
gcaggagtgggtgggttggtaagcaagtggagggg
gaattctttatttagctctgtatcccattttttaatagcattatttgatt
ttctgaagtccagcttcttgagttctttgtatatattgaatattagtccc
ctatcagatttaggattggtaaagatcctttccctatctgttagtagcct
ttttgtcttattgacagcgtcttttgccttatagaagctttgcaatttta
tgagctcccatttgtctattcttgatcttacagcacaagccattgctgct
ctgttcagggattttccccctgtgcccatatcttcaaggcttttcccctc
tttttcttctatatatttcagtgtctctgattttatgtggagttccttta
cgcatttagacttgagctttgtacaaggagataagaatggatcaattcac
attcttctacatggtaactgtcagttgtgccagcaccatttgttgaaaat
gctgtcttttttccagtgggtggttttagctcccttgtcaaagatcaagt
gaccgtaagtgggtgggttcatttctggttcttcaattgtattccattta
tctacctgactgttgctgtaggagtaacaagcaaaataaatgtccaatgg
agagaatagcagtgactcataaattgttaccactgttcttccttatacat
tcattactaacactctacatctttccactttttataacattgagtatatt
cttatatactcaatgaaagtactgcagaaagtagaaagcaaccatgaagt
ctcacctgtaatccataggaagttaaatatctaagattgatgaatacaga
gtctttatttttgtccggtaatgaaacttagggagcacttttgtatctga
ttcacaccatgaaaaatggtcaaataatgaagtttgtagaatttaaattt
tacaaatgtgtgtgtgtgttgtatgtgtgtgtattgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_10819926_10820778
seq2: B6Ng01-236M04.g_150_1004

seq1  TATTGAATATTAGTCCCCTATCAGATTTAGGATTGGTAAAGATCCTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATATTAGTCCCCTATCAGATTTAGGATTGGTAAAGATCCTTTCC  50

seq1  CTATCTGTTAGTAGCCTTTTTGTCTTATTGACAGCGTCTTTTGCCTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTTAGTAGCCTTTTTGTCTTATTGACAGCGTCTTTTGCCTTATA  100

seq1  GAAGCTTTGCAATTTTATGAGCTCCCATTTGTCTATTCTTGATCTTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTGCAATTTTATGAGCTCCCATTTGTCTATTCTTGATCTTACAG  150

seq1  CACAAGCCATTGCTGCTCTGTTCAGGGATTTTCCCCCTGTGCCCATATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCCATTGCTGCTCTGTTCAGGGATTTTCCCCCTGTGCCCATATCT  200

seq1  TCAAGGCTTTTCCCCTCTTTTTCTTCTATATATTTCAGTGTCTCTGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTTTTCCCCTCTTTTTCTTCTATATATTTCAGTGTCTCTGATTT  250

seq1  TATGTGGAGTTCCTTTACGCATTTAGACTTGAGCTTTGTACAAGGAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGAGTTCCTTTACGCATTTAGACTTGAGCTTTGTACAAGGAGATA  300

seq1  AGAATGGATCAATTCACATTCTTCTACATGGTAACTGTCAGTTGTGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGATCAATTCACATTCTTCTACATGGTAACTGTCAGTTGTGCCAG  350

seq1  CACCATTTGTTGAAAATGCTGTCTTTTTTCCAGTGGGTGGTTTTAGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTGTTGAAAATGCTGTCTTTTTTCCAGTGGGTGGTTTTAGCTCC  400

seq1  CTTGTCAAAGATCAAGTGACCGTAAGTGGGTGGGTTCATTTCTGGTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAAAGATCAAGTGACCGTAAGTGGGTGGGTTCATTTCTGGTTCTT  450

seq1  CAATTGTATTCCATTTATCTACCTGACTGTTGCTGTAGGAGTAACAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTATTCCATTTATCTACCTGACTGTTGCTGTAGGAGTAACAAGCA  500

seq1  AAATAAATGTCCAATGGAGAGAATAGCAGTGACTCATAAATTGTTACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGTCCAATGGAGAGAATAGCAGTGACTCATAAATTGTTACCAC  550

seq1  TGTTCTTCCTTATACATTCATTACTAACACTCTACATC-TTCCACTTTTT  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTTCTTCCTTATACATTCATTACTAACACTCTACATCTTTCCACTTTTT  600

seq1  ATAACATTGAGTATATTCTTATATACTCAATGAAAGTACTGCAGAAAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTGAGTATATTCTTATATACTCAATGAAAGTACTGCAGAAAGTA  650

seq1  GAAAGCAACCATGAAGTCTCACCTGTAATCCATAGGAAGTTAAATATCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAACCATGAAGTCTCACCTGTAATCCATAGGAAGTTAAATATCTA  700

seq1  AGATTGATGAATACAGAGTCTTTATTTTTGTCCGGTAATGAAACTTAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGATGAATACAGAGTCTTTATTTTTGTCCGGTAATGAAACTTAGGG  750

seq1  AGCAC-TTTGTATCTGATTCACACCATGAAAAATGGTCAAATAATGAAGT  798
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTTGTATCTGATTCACACCATGAAAAATGGTCAAATAATGAAGT  800

seq1  TTGTAGAATTTAAATTTTACAGATGTGTGTGTGTG-TGTATGTGTGTGTA  847
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  TTGTAGAATTTAAATTTTACAAATGTGTGTGTGTGTTGTATGTGTGTGTA  850

seq1  TGTGTG  853
      | ||||
seq2  T-TGTG  855