BAC Information

Click to search

BAC

Clone NameB6Ng01-237G02
Chromosome7 (Build37)
Map Location 151,366,066 - 151,480,517
singlet/doubletdoublet
Overlap geneShank2
Upstream geneKcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
Downstream geneCttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237G02.bB6Ng01-237G02.g
ACCGA048355GA048356
length1,155264
definitionB6Ng01-237G02.b B6Ng01-237G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,479,351 - 151,480,517)(151,366,066 - 151,366,329)
sequence
gaattctctaccaagcagatgagccttgtctcaaagtaatgagcttccat
acccggacaggccaaggacacagggaggggatatgatagaagatacaggg
aggagagttgggtatttctgaaatatagagagcccgtttcagcaccatgg
acagaggaaacggcacagagcggtttcttgggaccacagaccgctctccg
cacactgaccagccacacatagctgcacctgctcaaaaaaaaaaaaacca
ttcaaggccttaatgcagcagcctcagccattgtcagcaccattacatct
gtctactgcccacattcacctggaatgttattgaccctcaagccctccct
tctccacaccagttgtggggacctttcttatccactaaagcctggtggca
atactatctttttccctgctatatactttctttttgtttctcctctagac
tgtgagctcccaagaagctgtagctaattcttgattttcctccagccaag
tgcctcctgggtacccatttatcagctgcagaaataaaccaatgaattgg
gttttcagatgtcactaatcccccaacatttgctcatcgtccatgatgtc
aggatctgtgctgtaagttccacatgtgtctttatttacaggtaagatac
tgagagacttgaagtgagtgatgtgcccatgctcgcacagctaagaggag
gcagagcccagactcagacctggcttggctgaacaacctgtgcccttgac
catgggtcctttctctctccaacccactgcactgccatctgccaatccca
cagagtctgagcacagcagccatggtcccctgaagtgattcgggatcttt
tttttagcttgaaatttgaaatcactgatgcttcaattagaaccccacaa
tgaaagagccaagccttcggagctgctatggtgaaacagcctgcattcta
cctttcagcaggatctctttgctactctggagccaaaaaaccaacctgtt
cttagtcagtatggatgtgatgctatcagttttcggtccaggattgtttg
agaaaagatctgcctttccagatgacgagggcctctaggagaaagcaact
taaaccttaaagtaggaccaatgttccaacgtcttggggtactccactct
catgg
tgtctgctgagcccggggcctctctgcttagcccagtactcttaatgcag
gggcaagctgagctgtgcagggaccttatgtcctttccagtgccttgact
ccttggttctcgaaatgaaagggccgtaggcagtcagagcagagagtacg
gcctgtgccgaatactctcccagcagtctctgtcatatacacactatctc
caaaccagtgaccacatgctcgcagcaatgagaaatatcagcctgggggg
ggggagggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_151479351_151480517
seq2: B6Ng01-237G02.b_47_1201 (reverse)

seq1  CCATGAGAGT-GAGATCCCCAAGGCTGTTG--ACATTGGGTTCTTTACTT  47
      |||||||||| |||  ||||||| | ||||  |||||||  ||  ||| |
seq2  CCATGAGAGTGGAGTACCCCAAGAC-GTTGGAACATTGG--TC-CTAC-T  45

seq1  TTAAGGGTTTAAAGTGGCTTTTCTCTTAGGAAAGCCCCTCGTCATCTGGA  97
      ||||||  || |||| || |||||| |||   || |||||||||||||||
seq2  TTAAGG--TTTAAGTTGC-TTTCTCCTAG---AGGCCCTCGTCATCTGGA  89

seq1  AAGCCAGATTCTTTTTCTTCAAACATCCCTGGACCCGGAAAACTGATAGC  147
      ||| |||| ||||||   |||||||  ||||||||  |||||||||||||
seq2  AAGGCAGA-TCTTTT--CTCAAACAATCCTGGACC--GAAAACTGATAGC  134

seq1  CTCACCTTCCATACTGACTAAGAACAGG-TGGTTTTTTGGCTCCAGAGTA  196
       ||| | ||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCA-CATCCATACTGACTAAGAACAGGTTGGTTTTTTGGCTCCAGAGTA  183

seq1  GCAAAGAGATTCTGCTGAAAAGGTAG-ATGCAGGCTGTTTCACCATAGCA  245
      |||||||||| |||||| |||||||| |||||||||||||||||||||||
seq2  GCAAAGAGATCCTGCTG-AAAGGTAGAATGCAGGCTGTTTCACCATAGCA  232

seq1  GCTCCGAAGGCTTGGCTCTTTCATTGTGGGGTTCTAATTTGAAGCATCAG  295
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTCCGAAGGCTTGGCTCTTTCATTGTGGGGTTCTAA-TTGAAGCATCAG  281

seq1  TGATTTC-AATTTCAAGCT-AAAAAAAGATCCCGAATCACTTCAGGGGAC  343
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  TGATTTCAAATTTCAAGCTAAAAAAAAGATCCCGAATCACTTCAGGGGAC  331

seq1  CATGGCTGCTGTGCTCAGACTCTGTGGGATTGGCAGATGGCAGTGCAGTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGCTGTGCTCAGACTCTGTGGGATTGGCAGATGGCAGTGCAGTG  381

seq1  GGTTGGAGAGAGAAAGGACCCATGGTCAAGGGCACAGGTTGTTCAGCCAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAGAGAGAAAGGACCCATGGTCAAGGGCACAGGTTGTTCAGCCAA  431

seq1  GCCAGGTCTGAGTCTGGGCTCTGCCTCCTCTTAGCTGTGCGAGCATGGGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTCTGAGTCTGGGCTCTGCCTCCTCTTAGCTGTGCGAGCATGGGC  481

seq1  ACATCACTCACTTCAAGTCTCTCAGTATCTTACCTGTAAATAAAGACACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACTCACTTCAAGTCTCTCAGTATCTTACCTGTAAATAAAGACACA  531

seq1  TGTGGAACTTACAGCACAGATCCTGACATCATGGACGATGAGCAAATGTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAACTTACAGCACAGATCCTGACATCATGGACGATGAGCAAATGTT  581

seq1  GGGGGATTAGTGACATCTGAAAACCCAATTCATTGGTTTATTTCTGCAGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATTAGTGACATCTGAAAACCCAATTCATTGGTTTATTTCTGCAGC  631

seq1  TGATAAATGGGTACCCAGGAGGCACTTGGCTGGAGGAAAATCAAGAATTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATGGGTACCCAGGAGGCACTTGGCTGGAGGAAAATCAAGAATTA  681

seq1  GCTACAGCTTCTTGGGAGCTCACAGTCTAGAGGAGAAACAAAAAGAAAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGCTTCTTGGGAGCTCACAGTCTAGAGGAGAAACAAAAAGAAAGT  731

seq1  ATATAGCAGGGAAAAAGATAGTATTGCCACCAGGCTTTAGTGGATAAGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCAGGGAAAAAGATAGTATTGCCACCAGGCTTTAGTGGATAAGAA  781

seq1  AGGTCCCCACAACTGGTGTGGAGAAGGGAGGGCTTGAGGGTCAATAACAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCCACAACTGGTGTGGAGAAGGGAGGGCTTGAGGGTCAATAACAT  831

seq1  TCCAGGTGAATGTGGGCAGTAGACAGATGTAATGGTGCTGACAATGGCTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGAATGTGGGCAGTAGACAGATGTAATGGTGCTGACAATGGCTG  881

seq1  AGGCTGCTGCATTAAGGCCTTGAATGGTTTTTTTTTTTTTGAGCAGGTGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTGCATTAAGGCCTTGAATGGTTTTTTTTTTTTTGAGCAGGTGC  931

seq1  AGCTATGTGTGGCTGGTCAGTGTGCGGAGAGCGGTCTGTGGTCCCAAGAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGTGTGGCTGGTCAGTGTGCGGAGAGCGGTCTGTGGTCCCAAGAA  981

seq1  ACCGCTCTGTGCCGTTTCCTCTGTCCATGGTGCTGAAACGGGCTCTCTAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTCTGTGCCGTTTCCTCTGTCCATGGTGCTGAAACGGGCTCTCTAT  1031

seq1  ATTTCAGAAATACCCAACTCTCCTCCCTGTATCTTCTATCATATCCCCTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAAATACCCAACTCTCCTCCCTGTATCTTCTATCATATCCCCTC  1081

seq1  CCTGTGTCCTTGGCCTGTCCGGGTATGGAAGCTCATTACTTTGAGACAAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCCTTGGCCTGTCCGGGTATGGAAGCTCATTACTTTGAGACAAG  1131

seq1  GCTCATCTGCTTGGTAGAGAATTC  1167
      ||||||||||||||||||||||||
seq2  GCTCATCTGCTTGGTAGAGAATTC  1155

seq1: chr7_151366066_151366329
seq2: B6Ng01-237G02.g_70_333

seq1  TGTCTGCTGAGCCCGGGGCCTCTCTGCTTAGCCCAGTACTCTTAATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTGAGCCCGGGGCCTCTCTGCTTAGCCCAGTACTCTTAATGCAG  50

seq1  GGGCAAGCTGAGCTGTGCAGGGACCTTATGTCCTTTCCAGTGCCTTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGCTGAGCTGTGCAGGGACCTTATGTCCTTTCCAGTGCCTTGACT  100

seq1  CCTTGGTTCTCGAAATGAAAGGGCCGTAGGCAGTCAGAGCAGAGAGTACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTCTCGAAATGAAAGGGCCGTAGGCAGTCAGAGCAGAGAGTACG  150

seq1  GCCTGTGCCGAATACTCTCCCAGCAGTCTCTGTCATATACACACTATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCCGAATACTCTCCCAGCAGTCTCTGTCATATACACACTATCTC  200

seq1  CAAACCAGTGACCACATGCTCGCAGCAATGAGAAATATCAGCCTGGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGTGACCACATGCTCGCAGCAATGAGAAATATCAGCCTGGGGGG  250

seq1  GGGGAGGGAGGAGG  264
      ||||||||||||||
seq2  GGGGAGGGAGGAGG  264