BAC Information

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BAC

Clone NameB6Ng01-240H11
Chromosome7 (Build37)
Map Location 53,617,649 - 53,757,156
singlet/doubletdoublet
Overlap geneMyod1, Kcnc1, Sergef
Upstream gene2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog
Downstream geneTph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240H11.bB6Ng01-240H11.g
ACCGA050630GA050631
length5021,100
definitionB6Ng01-240H11.b B6Ng01-240H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,756,650 - 53,757,156)(53,617,649 - 53,618,754)
sequence
ttattcattcatctatagataagaactgcacacgggtctgttgcttttgc
tgtttaaaagctctatttcagccccattctgtgaagttacaggaagataa
cattttgcctactctgataccagagtagcgggaagatttatggctcatga
aatgactaatcaggacctacacagggggtgacatggaagctgaggttaaa
cagactagcctcaatgggggataaactcagagcagccctagcatgtggtc
aacatgtactagggggacccaagcatgtggtcccagccctagccaccaag
aggctggcagaggagagggtgggcttatggcttctgctgcctttggtttg
tcagtgggacaggtagtctggactaaacaccatcagccaaatggtcccaa
agacgaggtttctggggaaggtaggggtggtgtggttcttagtgttttag
gttctagcaccacaaaccatgtacccatgctgcaggatgaccttagtcca
tt
gaattccagcacgaggaaggtaacaatgagggtggcattcagtgactagg
gtagaagactgagcagaacagcccccagtgtggcacagaaggccactcta
ggagtcacagtgaaatgatgtgcctctcactgctcatttgcattctgaac
tcatagtcaggtgtttcactcatattgtaattccttacacctcaagaaac
caaaggatggggacagagatggggcactggatcctggatgagggagccaa
ggatcagagtgttcatgaagcttctgtaatgtactatcttgactgagact
ccaaggacaaatgactaatggaccatgaacaggagaagagccttccaggt
agaagggaaaggaaggagaggtgtgactatcttgagctatcctgtcagag
gaatgcatgttacttcttgggcagaggcgcattaagccatgtgattggga
gcaagcagggaagcaattgggaagggtttgaaagctgggtcaggacactt
ggactttatccctgaggttatggagagtcatgtagagttgactcctgcta
tatttctgctttacagtcatatgcctgggttcagtggaggagtgcattta
gagagctttgagattcagggctgacaatacggtgatgaggtttcaccaaa
gaaaggatgccacagactgctctgcaacagagtctggaagagcagacagg
aggtgcattgagggatgtttgggaaatgaaattagtaagactgagtggcc
agaagaggaaggagatgagaaaagacatccaggtgcctaccttgggtcac
agttgtaggggacactgaaagagaactatttcctgaggactggctggatt
cctggagcagataacagtcatattaagggacatgttgattttgagggact
gtgaaacatctgtgtgcaaatgtccagtggtttcattgaatggttagtct
gatatggagagattcatgcatgggttacatggtgagtgttcttgaaaatt
aacatcacagagatggcagaagtagagctctagtgcgactttaggacttg
aggggcaaaagccacattgaggagattggactatgacattgttcatttca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_53756650_53757156
seq2: B6Ng01-240H11.b_44_551 (reverse)

seq1  AATGGACAAAGGTCATCCTGCAGCATGGGTACATGG-TTCTGATGCTAGA  49
      ||||||| |||||||||||||||||||||||||||| || || |||||||
seq2  AATGGACTAAGGTCATCCTGCAGCATGGGTACATGGTTTGTGGTGCTAGA  50

seq1  ACCTAAAACACTAAGAACCACACCACCCCTACCTTCCCCAGAAACCTCGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAACACTAAGAACCACACCACCCCTACCTTCCCCAGAAACCTCGT  100

seq1  CTTTGGGACCATTTGGCTGATGGTGTTTAGTCCAGACTACCTGTCCCACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGACCATTTGGCTGATGGTGTTTAGTCCAGACTACCTGTCCCACT  150

seq1  GACAAACCAAAGGCAGCAGAAGCCATAAGCCCACCCTCTCCTCTGCCAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACCAAAGGCAGCAGAAGCCATAAGCCCACCCTCTCCTCTGCCAGC  200

seq1  CTCTTGGTGGCTAGGGCTGGGACCACATGCTTGGGTCCCCCTAGTACATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTGGCTAGGGCTGGGACCACATGCTTGGGTCCCCCTAGTACATG  250

seq1  TTGACCACATGCTAGGGCTGCTCTGAGTTTATCCCCCATTGAGGCTAGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCACATGCTAGGGCTGCTCTGAGTTTATCCCCCATTGAGGCTAGTC  300

seq1  TGTTTAACCTCAGCTTCCATGTCACCCCCTGTGTAGGTCCTGATTAGTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAACCTCAGCTTCCATGTCACCCCCTGTGTAGGTCCTGATTAGTCA  350

seq1  TTTCATGAGCCATAAATCTTCCCGCTACTCTGGTATCAGAGTAGGCAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAGCCATAAATCTTCCCGCTACTCTGGTATCAGAGTAGGCAAAA  400

seq1  TGTTATCTTCCTGTAACTTCACAGAATGGGGCTGAAATAGAGCTTTTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTTCCTGTAACTTCACAGAATGGGGCTGAAATAGAGCTTTTAAA  450

seq1  CAGCAAAAGCAACAGACCCGTGTGCAGTTCTTATCTATAGATGAATGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAAGCAACAGACCCGTGTGCAGTTCTTATCTATAGATGAATGAAT  500

seq1  AAGAATTC  507
      ||||||||
seq2  AAGAATTC  508

seq1: chr7_53617649_53618754
seq2: B6Ng01-240H11.g_65_1164

seq1  GAATTCCAGCACGAGGAAGGTAACAATGAGGGTGGCATTCAGTGACTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACGAGGAAGGTAACAATGAGGGTGGCATTCAGTGACTAGG  50

seq1  GTAGAAGACTGAGCAGAACAGCCCCCAGTGTGGCACAGAAGGCCACTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGACTGAGCAGAACAGCCCCCAGTGTGGCACAGAAGGCCACTCTA  100

seq1  GGAGTCACAGTGAAATGATGTGCCTCTCACTGCTCATTTGCATTCTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCACAGTGAAATGATGTGCCTCTCACTGCTCATTTGCATTCTGAAC  150

seq1  TCATAGTCAGGTGTTTCACTCATATTGTAATTCCTTACACCTCAAGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTCAGGTGTTTCACTCATATTGTAATTCCTTACACCTCAAGAAAC  200

seq1  CAAAGGATGGGGACAGAGATGGGGCACTGGATCCTGGATGAGGGAGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATGGGGACAGAGATGGGGCACTGGATCCTGGATGAGGGAGCCAA  250

seq1  GGATCAGAGTGTTCATGAAGCTTCTGTAATGTACTATCTTGACTGAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGAGTGTTCATGAAGCTTCTGTAATGTACTATCTTGACTGAGACT  300

seq1  CCAAGGACAAATGACTAATGGACCATGAACAGGAGAAGAGCCTTCCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGACAAATGACTAATGGACCATGAACAGGAGAAGAGCCTTCCAGGT  350

seq1  AGAAGGGAAAGGAAGGAGAGGTGTGACTATCTTGAGCTATCCTGTCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAAAGGAAGGAGAGGTGTGACTATCTTGAGCTATCCTGTCAGAG  400

seq1  GAATGCATGTTACTTCTTGGGCAGAGGCGCATTAAGCCATGTGATTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCATGTTACTTCTTGGGCAGAGGCGCATTAAGCCATGTGATTGGGA  450

seq1  GCAAGCAGGGAAGCAATTGGGAAGGGTTTGAAAGCTGGGTCAGGACACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGGGAAGCAATTGGGAAGGGTTTGAAAGCTGGGTCAGGACACTT  500

seq1  GGACTTTATCCCTGAGGTTATGGAGAGTCATGTAGAGTTGACTCCTGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTATCCCTGAGGTTATGGAGAGTCATGTAGAGTTGACTCCTGCTA  550

seq1  TATTTCTGCTTTACAGTCATATGCCTGGGTTCAGTGGAGGAGTGCATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGCTTTACAGTCATATGCCTGGGTTCAGTGGAGGAGTGCATTTA  600

seq1  GAGAGCTTTGAGATTCAGGGCTGACAATACGGTGATGAGGTTTCACCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTTGAGATTCAGGGCTGACAATACGGTGATGAGGTTTCACCAAA  650

seq1  GAAAGGATGCCACAGACTGCTCTGCAACAGAGTCTGGAAGAGCAGACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATGCCACAGACTGCTCTGCAACAGAGTCTGGAAGAGCAGACAGG  700

seq1  AGGTGCATTGAGGGATGTTTGGGAAATGAAATTAGTAAGACTGAGTGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCATTGAGGGATGTTTGGGAAATGAAATTAGTAAGACTGAGTGGCC  750

seq1  AGAAGAGGAAGGAGATGAGAAAAGACATCCAGGTGCCTACCTTGGGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGAAGGAGATGAGAAAAGACATCCAGGTGCCTACCTTGGGTCAC  800

seq1  AGTTGTAGGGGACACTGAAAGAGAACTATTTCCTGAGGACTGGCTGGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAGGGGACACTGAAAGAGAACTATTTCCTGAGGACTGGCTGGATT  850

seq1  CCTGGAGCAGATAACAGTCATATTAAGGGACATGTTGATTTTGAGGGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCAGATAACAGTCATATTAAGGGACATGTTGATTTTGAGGGACT  900

seq1  GTGAAACATCTGTGTGCAAATGTCCAGTGG-TTCATTGAATGGGTTAGTC  949
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  GTGAAACATCTGTGTGCAAATGTCCAGTGGTTTCATTGAAT-GGTTAGTC  949

seq1  TGATATGGAGAGATTCATGCATGGG-TACATGGTGAGTG-TCTTGAAAAT  997
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TGATATGGAGAGATTCATGCATGGGTTACATGGTGAGTGTTCTTGAAAAT  999

seq1  TAACATCACAGAGAATGGGCAGAAAGTAGAGC-CCAGTGGGGACTTTAGG  1046
      ||||||||||||||   ||||| ||||||||| | ||| | ||||||| |
seq2  TAACATCACAGAGA--TGGCAG-AAGTAGAGCTCTAGT-GCGACTTTA-G  1044

seq1  GACTTTGAGGGGCAAAAAGCCACA-TGAGGAGATTGGGAACTATGACAAT  1095
      ||| ||||||||| |||||||||| ||||||||||||  |||||||| ||
seq2  GAC-TTGAGGGGC-AAAAGCCACATTGAGGAGATTGG--ACTATGAC-AT  1089

seq1  AGGTCATTTCA  1106
       | ||||||||
seq2  TGTTCATTTCA  1100