BAC Information

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BAC

Clone NameB6Ng01-240P02
Chromosome11 (Build37)7 (Build37)
Map Location 104,208,416 - 104,209,14497,334,214 - 97,334,289
singlet/doubletsingletsinglet
Overlap gene1700081L11Rik
Upstream gene5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt
Downstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240P02.bB6Ng01-240P02.g
ACCGA050982GA050983
length729330
definitionB6Ng01-240P02.b B6Ng01-240P02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,208,416 - 104,209,144)(97,334,214 - 97,334,289)
sequence
gaattcatctcaaataactgagaaagaaattgaaattaaagtgtttgggg
gtgttcaccataaatccctgcattcaaaaatcaaggcaaatagatctctt
gagttctaggccagcctgggctacatagtaagattcccccatctcttttt
agattttcaagacagggtttctctgtgtaacagccactctgtggatcagg
cctgcctctctgcctctgtgctaggattaaagggccagctgagacctcat
ctctttcttcttaattaagcaaaggatcataagagggaaggaaagaggct
tcttagcaagtaaaagcacaggcatggttcttgttcagcagaaagtctat
ggtggcatacatctataatcccagggcatctcaaaaccacagcaaccaaa
aagctggggatggggaggtaaaaatagggctggtcttgtagctgttggta
gagctcttgcttattagcatatgtaaaaccatttgtttaacctctagaat
tgaaaaatagctttaagtagttgtgtgaaacctttatctctagctataga
agatgagggactggggtgtgattatttattaatattgtagcaggatggcc
tttgttttcttatcagtttagttccgacctagagataatggaaatcttta
tgctctttgggaatagaaacacggcctgatgagagtgccacctggtggct
gggaatatctatgatggatttttgttgtt
atatgtaagatgctaagggtccctgtccccagttggttctgattggtaaa
taaagctgccagcagccaatggttgggcagggagacagaggcaggacttt
ggcattggtgggtaaggggatggagataagaagaaaggagagaatcaccg
tgttgggaaaggaataagatcctggcttgagagctgcagaagagagaact
taccaatgatgtaagagctggagaagagtggccctaggggcgcccctcca
ttagttctagggtagcaaaggtggaatataggtttttgtaagtaataact
cagaagtatcagaggggaggtgttagcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104208416_104209144
seq2: B6Ng01-240P02.b_43_771 (reverse)

seq1  AACAACAAAAATCCATCATAGATATTCCCAGCCACCAGGTGGCACTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAAATCCATCATAGATATTCCCAGCCACCAGGTGGCACTCTCA  50

seq1  TCAGGCCGTGTTTCTATTCCCAAAGAGCATAAAGATTTCCATTATCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCGTGTTTCTATTCCCAAAGAGCATAAAGATTTCCATTATCTCTA  100

seq1  GGTCGGAACTAAACTGATAAGAAAACAAAGGCCATCCTGCTACAATATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGAACTAAACTGATAAGAAAACAAAGGCCATCCTGCTACAATATTA  150

seq1  ATAAATAATCACACCCCAGTCCCTCATCTTCTATAGCTAGAGATAAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATCACACCCCAGTCCCTCATCTTCTATAGCTAGAGATAAAGGT  200

seq1  TTCACACAACTACTTAAAGCTATTTTTCAATTCTAGAGGTTAAACAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAACTACTTAAAGCTATTTTTCAATTCTAGAGGTTAAACAAATG  250

seq1  GTTTTACATATGCTAATAAGCAAGAGCTCTACCAACAGCTACAAGACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACATATGCTAATAAGCAAGAGCTCTACCAACAGCTACAAGACCAG  300

seq1  CCCTATTTTTACCTCCCCATCCCCAGCTTTTTGGTTGCTGTGGTTTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTTTTACCTCCCCATCCCCAGCTTTTTGGTTGCTGTGGTTTTGAG  350

seq1  ATGCCCTGGGATTATAGATGTATGCCACCATAGACTTTCTGCTGAACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTGGGATTATAGATGTATGCCACCATAGACTTTCTGCTGAACAAG  400

seq1  AACCATGCCTGTGCTTTTACTTGCTAAGAAGCCTCTTTCCTTCCCTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGCCTGTGCTTTTACTTGCTAAGAAGCCTCTTTCCTTCCCTCTTA  450

seq1  TGATCCTTTGCTTAATTAAGAAGAAAGAGATGAGGTCTCAGCTGGCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTTGCTTAATTAAGAAGAAAGAGATGAGGTCTCAGCTGGCCCTT  500

seq1  TAATCCTAGCACAGAGGCAGAGAGGCAGGCCTGATCCACAGAGTGGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTAGCACAGAGGCAGAGAGGCAGGCCTGATCCACAGAGTGGCTGT  550

seq1  TACACAGAGAAACCCTGTCTTGAAAATCTAAAAAGAGATGGGGGAATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTCTTGAAAATCTAAAAAGAGATGGGGGAATCTT  600

seq1  ACTATGTAGCCCAGGCTGGCCTAGAACTCAAGAGATCTATTTGCCTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTAGCCCAGGCTGGCCTAGAACTCAAGAGATCTATTTGCCTTGAT  650

seq1  TTTTGAATGCAGGGATTTATGGTGAACACCCCCAAACACTTTAATTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATGCAGGGATTTATGGTGAACACCCCCAAACACTTTAATTTCAA  700

seq1  TTTCTTTCTCAGTTATTTGAGATGAATTC  729
      |||||||||||||||||||||||||||||
seq2  TTTCTTTCTCAGTTATTTGAGATGAATTC  729

seq1: chr7_97334214_97334289
seq2: B6Ng01-240P02.g_323_403 (reverse)

seq1  GCTGCCAACACCTCCCCTCTGATACTCCTGAGTTATTACTTACTAAAATC  50
      ||||| |||||||||||||||||||| |||||||||||||||| |||| |
seq2  GCTGCTAACACCTCCCCTCTGATACTTCTGAGTTATTACTTACAAAAACC  50

seq1  TATATTCCA-----TCTGCCCTAGACCTAAT  76
      |||||||||      || ||||||| |||||
seq2  TATATTCCACCTTTGCTACCCTAGAACTAAT  81