BAC Information

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BAC

Clone NameB6Ng01-246I15
Chromosome7 (Build37)
Map Location 71,129,807 - 71,237,532
singlet/doubletdoublet
Overlap genenone
Upstream geneChrna7, Otud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik
Downstream geneTrpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246I15.bB6Ng01-246I15.g
ACCGA055130GA055131
length1,0671,108
definitionB6Ng01-246I15.b B6Ng01-246I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,129,807 - 71,130,895)(71,236,431 - 71,237,532)
sequence
gaattcactatgtagatcaggctggctttcaactcacagagatctgtctg
cctctaccttctgaatgctgggattaaaggggtgcacccccacacctagc
tagaagtgtcctttgtttaaaaaaaaaaaaaaagacatagccagagtata
ctgaagcaacagcaggaaaatcttaaattccaggacagacttgccctcag
atatatgccctagtgacaacaaacaaacaaagaaacaagcaagcaacagc
aacaacaaaaccccaaacaagctatcacagactgaagtgctttaccagaa
aatctctctgtttagttctacccagggtcttgagcaagtcactgaggttg
agagaggctctagagaagagtctgagatggaaggatgtgctcttacaacc
aatgaaaatatggtactcatgtgtctcccccaaccccacatcccacccca
cgctgcctccatgtgtgttctgagcctcttggagtttgcatcttgcgtca
agccgaggaaaggttgcgtgaacacatagcgggaagccatccccagccag
gaaatagagcttcacttcaccattacccattacccagtcgtgccagcacc
cttcccagccttgagatgggaatgaaagagtctgtacttaaagtagccag
cctaaggtactttcctatggtggaccgagaagaggaagataccattttaa
tgcacatgctcacaatcacagagcttcaagaggcttagagacaataccat
ctctcggttctcctggagacctgtgtcgcggaagtctgcctgacccggag
acactgatgcagtttttcacccctaagatgcagaaggtacctggttttca
tggtcactaaaacagacacacaagggaatcagcccaagaagtcttaagac
atggaagaggctgggaaatcataagaacatgtgtctgactgcaaagaatg
aaaagagaatggtcacaccgagacatgtgcagagtcccatatctgtgaaa
taagatcttttctcaaacacacagagtaaagggaaggcaacagaaacttg
tgacggagtatctgtga
gaattctgggaatacagctataggcttctgtatccatgaatgtttaggtc
attcctgctgtatgtattttatgagcagtgtgcatttctctttagagcta
gatcttagagttgactggtcaatgagtctttttctgttgaatccacatat
actgcctaatcattttattaaatgtataaaatggtaaaaaaaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaacaaa
gaaagaaagaaacaaagaaacaaagaaaggaaggaagaaagaaaggaagg
aaggaaggaagaaaagagagaaaaaaggaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaggaaagagag
aaagaagaagaagaaaaaagaatagaaaaggaaaggaaagaaaatggtga
gccttgtggtgtcacaatggaatattatggtgggacaattctgcaatgtg
gggacaaaattcagcattgtgttgtctctaatctgcattatgataacaca
gtgaaccactctgaagagcagtggaccacagtgaagttgcagagcagcac
tatgatgttgtaatgtagaacttgataacacactggaacatggcgaaggc
atagcatactattgtgatggcacactgaaaaaaaatatgtcactgtgatg
acacaatgtagaacagttctaaagaagaatagtgtattgtggtgaactgt
ggtattgatggtttgagtcatgcaggtcaatcaaagaaaggtgtccactc
cagaacataaaccgggctctgagaaagcaggaaggaacagtctcaatgaa
ctgaacccttgaagtcccagtagcagcatatttattgattgttcctcata
ccaaagcccccttaatctaatctatgtgttttggtgaaaggaaagcatca
tgtccctgcaactttcagttcctttacagtgcactgttgttagtccttgc
caggtgcacctcgaataatgcagacatttccaaggggtgcaggacctctg
tgatctaaaattcacgccaaaggctgtaagctccttaagaaaggcaactc
ttacagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_71129807_71130895
seq2: B6Ng01-246I15.b_42_1108

seq1  GAATTCACTATGTAGATCAGGCTGGCTTTCAACTCACAGAGATCTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGATCAGGCTGGCTTTCAACTCACAGAGATCTGTCTG  50

seq1  CCTCTACCTTCTGAATGCTGGGATTAAAGGGGTGCACCCCCACACCTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACCTTCTGAATGCTGGGATTAAAGGGGTGCACCCCCACACCTAGC  100

seq1  TAGAAGTGTCCTTTGTTT-AAAAAAAAAAAAAAGACATAGCCAGAGTATA  149
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGAAGTGTCCTTTGTTTAAAAAAAAAAAAAAAGACATAGCCAGAGTATA  150

seq1  CTGAAGCAACAGCAGGAAAATCTTAAATTCCAGGACAGACTTGCCCTCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCAACAGCAGGAAAATCTTAAATTCCAGGACAGACTTGCCCTCAG  200

seq1  ATATATGCCCTAGTGACAACAAACAAACAAAGAAACAAGCAAGCAACAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCCCTAGTGACAACAAACAAACAAAGAAACAAGCAAGCAACAGC  250

seq1  AACAACAAAACCCCAAACAAGCTATCACAGACTGAAGTGCTTTACCAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAACCCCAAACAAGCTATCACAGACTGAAGTGCTTTACCAGAA  300

seq1  AATCTCTCTGTTTAGTTCTACCCAGGGTCTTGAGCAAGTCACTGAGGTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCTGTTTAGTTCTACCCAGGGTCTTGAGCAAGTCACTGAGGTTG  350

seq1  AGAGAGGCTCTAGAGAAGAGTCTGAGATGGAAGGATGTGCTCTTACAACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCTCTAGAGAAGAGTCTGAGATGGAAGGATGTGCTCTTACAACC  400

seq1  AATGAAAATATGGTACTCATGTGTCTCCCCCAACCCCACATCCCACCCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATATGGTACTCATGTGTCTCCCCCAACCCCACATCCCACCCCA  450

seq1  CGCTGCCTCCATGTGTGTTCTGAGCCTCTTGGAGTTTGCATCTTGCGTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCCTCCATGTGTGTTCTGAGCCTCTTGGAGTTTGCATCTTGCGTCA  500

seq1  AGCCGAGGAAAGGTTGCGTGAACACATAGCGGGAAGCCATCCCCAGCCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGAGGAAAGGTTGCGTGAACACATAGCGGGAAGCCATCCCCAGCCAG  550

seq1  GAAATAGAGCTTCACTTCACCATTACCCATTACCCAGTCGTGCCAGCACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAGCTTCACTTCACCATTACCCATTACCCAGTCGTGCCAGCACC  600

seq1  CTTCCCAGCCTTGAGATGGGAATGAAAGAGTCTGTACTTAAAGTAGCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGCCTTGAGATGGGAATGAAAGAGTCTGTACTTAAAGTAGCCAG  650

seq1  CCTAAGGTACTTTCCTATGGTGGACCGAGAAGAGGAAGATACCATTTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGTACTTTCCTATGGTGGACCGAGAAGAGGAAGATACCATTTTAA  700

seq1  TGCACATGCTCACAATCACAGAGCTTCAAGAGGCTTAGAGACAATACCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGCTCACAATCACAGAGCTTCAAGAGGCTTAGAGACAATACCAT  750

seq1  CTCTCGGTTCTCCTGGAGACCTGTGTCGCGGAAGTCTGCCTGACCCGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGGTTCTCCTGGAGACCTGTGTCGCGGAAGTCTGCCTGACCCGGAG  800

seq1  ACACTGATGCAGTTTTTCACCCCTAAGATGCAGAAGGTACCTGGTTTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATGCAGTTTTTCACCCCTAAGATGCAGAAGGTACCTGGTTTTCA  850

seq1  TGGTCACTAAAACAGACACACAAGGGAATCAG-CCAAGAAGTCTTAAGAC  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGTCACTAAAACAGACACACAAGGGAATCAGCCCAAGAAGTCTTAAGAC  900

seq1  ATGGAAGAAGGCT-GGAAATCATAAGAACAATGTGTCTGACTGCAAAGGA  947
      ||||||| ||||| ||||||||||||||| ||||||||||||||||| ||
seq2  ATGGAAG-AGGCTGGGAAATCATAAGAAC-ATGTGTCTGACTGCAAA-GA  947

seq1  ATGAAAAGAGAAATTGGTCACACCGAGACATGTGCAGAGTCCCCATATCT  997
      ||||||||||||  |||||||||||||||||||||||||| |||||||||
seq2  ATGAAAAGAGAA--TGGTCACACCGAGACATGTGCAGAGT-CCCATATCT  994

seq1  GTGAAAATTAAAGATCTTTTTCTCAAAACACCACAGGGAGGTAAAGGGGG  1047
      ||||||    |||||| ||||||||||    ||||  || |||||  |||
seq2  GTGAAA---TAAGATC-TTTTCTCAAA----CACACAGA-GTAAA--GGG  1033

seq1  AGGGGCCAAACAGGAAACTTGGTGAACGGGGAGTATCTGTGA  1089
      | ||    |||| ||||||| ||||    |||||||||||||
seq2  AAGG---CAACA-GAAACTT-GTGA---CGGAGTATCTGTGA  1067

seq1: chr7_71236431_71237532
seq2: B6Ng01-246I15.g_66_1173 (reverse)

seq1  AGCTGT-AGAGTTGCTTTTCTAAAGGAGCTTTACAGCCTTT-GCGTGA--  46
      |||||| |||||||| ||||| ||||||| ||||||||||| ||||||  
seq2  AGCTGTAAGAGTTGCCTTTCTTAAGGAGC-TTACAGCCTTTGGCGTGAAT  49

seq1  TTTTGGTCACAAGAGGGTCCTGGCACCCCT--GGAATGTCTTGCATTA-T  93
      ||| | |||| ||| |||||| ||||||||  | |||||| ||||||| |
seq2  TTTAGATCAC-AGA-GGTCCT-GCACCCCTTGGAAATGTC-TGCATTATT  95

seq1  CGA-GTGCAC--TGCAAGGACT-ACAACAGTGCACTGTAA--GGACTG-A  136
      ||| ||||||   ||||||||| |||||||||||||||||  | |||| |
seq2  CGAGGTGCACCTGGCAAGGACTAACAACAGTGCACTGTAAAGGAACTGAA  145

seq1  AGTTGCAGGGACATGATGCTTTCC-TTCA-CAAAACACATAGATTAGATT  184
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  AGTTGCAGGGACATGATGCTTTCCTTTCACCAAAACACATAGATTAGATT  195

seq1  A--GGGGCTTTGGTATGAGGAACAATCAATAAATATGCTGCTACTGGGAC  232
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGCTTTGGTATGAGGAACAATCAATAAATATGCTGCTACTGGGAC  245

seq1  TTCAA-GGTTCAGTTCATTGAGACTGTTCCTTCCTGCTTTCTCAGAGCCC  281
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGGTTCAGTTCATTGAGACTGTTCCTTCCTGCTTTCTCAGAGCCC  295

seq1  GGTTTATGTTCTGGAGTGGACACCTTTCTTTGATTGACCTGCATGACTCA  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATGTTCTGGAGTGGACACCTTTCTTTGATTGACCTGCATGACTCA  345

seq1  AACCATCAATACCACAGTTCACCACAATACACTATTCTTCTTTAGAACTG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCAATACCACAGTTCACCACAATACACTATTCTTCTTTAGAACTG  395

seq1  TTCTACATTGTGTCATCACAGTGACATATTTTTTTTCAGTGTGCCATCAC  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATTGTGTCATCACAGTGACATATTTTTTTTCAGTGTGCCATCAC  445

seq1  AATAGTATGCTATGCCTTCGCCATGTTCCAGTGTGTTATCAAGTTCTACA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATGCTATGCCTTCGCCATGTTCCAGTGTGTTATCAAGTTCTACA  495

seq1  TTACAACATCATAGTGCTGCTCTGCAACTTCACTGTGGTCCACTGCTCTT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACATCATAGTGCTGCTCTGCAACTTCACTGTGGTCCACTGCTCTT  545

seq1  CAGAGTGGTTCACTGTGTTATCATAATGCAGATTAGAGACAACACAATGC  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGTTCACTGTGTTATCATAATGCAGATTAGAGACAACACAATGC  595

seq1  TGAATTTTGTCCCCACATTGCAGAATTGTCCCACCATAATATTCCATTGT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTGTCCCCACATTGCAGAATTGTCCCACCATAATATTCCATTGT  645

seq1  GACACCACAAGGCTCACCATTTTCTTTCCTTTCCTTTTCTATTCTTTTTT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCACAAGGCTCACCATTTTCTTTCCTTTCCTTTTCTATTCTTTTTT  695

seq1  CTTCTTCTTCTTTCTCTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTC  731
      |||||||||||||||||||||||    |||||||||||||||||||||||
seq2  CTTCTTCTTCTTTCTCTCTTTCC----TTCTTTCTTTCTTTCTTTCTTTC  741

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTTTTTCTC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTTTTTCTC  791

seq1  TCTTTTCTTCCTTCCTTCCTTCCTTTCTTTCTTCCTTCCTTTCTTTGTTT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTCCTTCCTTCCTTCCTTTCTTTCTTCCTTCCTTTCTTTGTTT  841

seq1  CTTTGTTTCTTTCTTTCTTTGTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  881
      |||||||||||||||||||||    |||||||||||||||||||||||||
seq2  CTTTGTTTCTTTCTTTCTTTG----TTTCTTTCTTTCTTTCTTTCTTTCT  887

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTACCATTTTATACAT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTACCATTTTATACAT  937

seq1  TTAATAAAATGATTAGGCAGTATATGTGGATTCAACAGAAAAAGACTCAT  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAATGATTAGGCAGTATATGTGGATTCAACAGAAAAAGACTCAT  987

seq1  TGACCAGTCAACTCTAAGATCTAGCTCTAAAGAGAAATGCACACTGCTCA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGTCAACTCTAAGATCTAGCTCTAAAGAGAAATGCACACTGCTCA  1037

seq1  TAAAATACATACAGCAGGAATGACCTAAACATTCATGGATACAGAAGCCT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACATACAGCAGGAATGACCTAAACATTCATGGATACAGAAGCCT  1087

seq1  ATAGCTGTATTCCCAGAATTC  1102
      |||||||||||||||||||||
seq2  ATAGCTGTATTCCCAGAATTC  1108