BAC Information

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BAC

Clone NameB6Ng01-249C13
Chromosome7 (Build37)
Map Location 16,533,911 - 16,534,529
singlet/doubletsinglet
Overlap geneEhd2
Upstream geneLOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2
Downstream geneGltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249C13.bB6Ng01-249C13.g
ACCGA057050GA057051
length1,020620
definitionB6Ng01-249C13.b B6Ng01-249C13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctgtctaataattttaacatgaaggtgtgttgtattttg
tcaaattctttttgggtatctaaagagcttatcatgtgatttttttcttt
gagtttgtttaaatagtagtatacattaatggattttcacatattgaacc
aaccttgcatcccagggctgaagcctacttgatcatggtgaatgatggtt
ttgatgtgttcttggattgagtttactagaattttattgagtaattttgc
acagatattcagaagcaaattggactgaagttccatttgttaagtgtgtc
tttgtgtggtgtatgtattagagtaattagcttcctagaatgaattctat
agtgttcattctattccattttatggaatagtttgaggaatattgttatt
agttcttctttgaatgtcttgtagacttctgggctaaagccatctgaact
ttggattttattggttgggagattttaactacttcttctttctccttagg
gtatgtgggtctgtttagtggtttacttacccttgatttaactttgaaat
gtggtatctgtctagaaaactatacatttcatctagattttccagttttg
ttgagtatgggcatctgtagtaggacttgatgactttttgaatttcctca
gtttctgttgttatgtttaacttttcatttctgaatttcttaattagaat
tcagtctctgtgccctttgttagacttgctagggggttacctatcttgtc
tattctctcaacaaccagctttttttaatattttttattacatatttttc
ctcattacatttccaatgctatcccaaaagtccccccatcaagttccttg
atccacttagttttgacctttagtacaaggagataagaatggattgattc
acattcttcttaattgataacaaccagttgtggcagcatcattttgtgaa
attctgtctctcttccactgggatggttttagctcccttgtcgaagaata
aagtgaccatatagcaatgt
gaattctcggtgctatagcctctcctcctctctacaggggcctcacacac
tttatgtcttagcatccttagtacctgaccctggtgggagaaaaaaataa
gatggggcgggggggggggcgttgaggacagctagaaggggctgaaaacc
caagagtgtctcctacggggccaataaagccaaagctgctgcttgtgtcg
ctgtcaggctatcttggggcggggacccctaaggaagaggtgcctgggga
accattctggctcacaggggcggtgcagtttgtgactcaactctgcgctg
actcagtctcgggctgggggccagtcctgcatattttccgaagaaaagtt
actcagggccctccccacccttgggacacccctccctcccgctttccgcc
ttggggcctgggaacccagttctgggcgtggacgaggaccagtgccagtt
tgtgtacagtttgcccttagtctccaaagcaccttccaacgcgcactgac
acgaatcgaatgcaccagagcagatcctgtagcccgagaccactgggtcc
tggaggaggagggattagtgtgagagtgcacaggacactgatccagcccc
acacccggtgcgtccgagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16533911_16534529
seq2: B6Ng01-249C13.g_71_690 (reverse)

seq1  GTCTCGGGCGCACCGGGTGT-GGGCTGGATCAGTGTCCTGTGCACTCTCA  49
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  GTCTCGGACGCACCGGGTGTGGGGCTGGATCAGTGTCCTGTGCACTCTCA  50

seq1  CACTAATCCCTCCTCCTCCAGGACCCAGTGGTCTCGGGCTACAGGATCTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATCCCTCCTCCTCCAGGACCCAGTGGTCTCGGGCTACAGGATCTG  100

seq1  CTCTGGTGCATTCGATTCGTGTCAGTGCGCGTTGGAAGGTGCTTTGGAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGCATTCGATTCGTGTCAGTGCGCGTTGGAAGGTGCTTTGGAGA  150

seq1  CTAAGGGCAAACTGTACACAAACTGGCACTGGTCCTCGTCCACGCCCAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGCAAACTGTACACAAACTGGCACTGGTCCTCGTCCACGCCCAGA  200

seq1  ACTGGGTTCCCAGGCCCCAAGGCGGAAAGCGGGAGGGAGGGGTGTCCCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTTCCCAGGCCCCAAGGCGGAAAGCGGGAGGGAGGGGTGTCCCAA  250

seq1  GGGTGGGGAGGGCCCTGAGTAACTTTTCTTCGGAAAATATGCAGGACTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGAGGGCCCTGAGTAACTTTTCTTCGGAAAATATGCAGGACTGG  300

seq1  CCCCCAGCCCGAGACTGAGTCAGCGCAGAGTTGAGTCACAAACTGCACCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGCCCGAGACTGAGTCAGCGCAGAGTTGAGTCACAAACTGCACCG  350

seq1  CCCCTGTGAGCCAGAATGGTTCCCCAGGCACCTCTTCCTTAGGGGTCCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGAGCCAGAATGGTTCCCCAGGCACCTCTTCCTTAGGGGTCCCC  400

seq1  GCCCCAAGATAGCCTGACAGCGACACAAGCAGCAGCTTTGGCTTTATTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAGATAGCCTGACAGCGACACAAGCAGCAGCTTTGGCTTTATTGG  450

seq1  CCCCGTAGGAGACACTCTTGGGTTTTCAGCCCCTTCTAGCTGTCCTCAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTAGGAGACACTCTTGGGTTTTCAGCCCCTTCTAGCTGTCCTCAAC  500

seq1  GCCCCCCCCCCCGCCCCATCTTATTTTTTTCTCCCACCAGGGTCAGGTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCCCCCCGCCCCATCTTATTTTTTTCTCCCACCAGGGTCAGGTAC  550

seq1  TAAGGATGCTAAGACATAAAGTGTGTGAGGCCCCTGTAGAGAGGAGGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATGCTAAGACATAAAGTGTGTGAGGCCCCTGTAGAGAGGAGGAGA  600

seq1  GGCTATAGCACCGAGAATTC  619
      ||||||||||||||||||||
seq2  GGCTATAGCACCGAGAATTC  620