BAC Information

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BAC

Clone NameB6Ng01-257O19
Chromosome7 (Build37)
Map Location 31,294,567 - 31,411,147
singlet/doubletdoublet
Overlap geneProdh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1
Upstream geneLOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728
Downstream geneEtv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257O19.bB6Ng01-257O19.g
ACCGA063498GA063499
length1,067978
definitionB6Ng01-257O19.b B6Ng01-257O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,294,567 - 31,295,641)(31,410,163 - 31,411,147)
sequence
gaattctaggccttggctatactcggtgaaactgtgtgtcagaaaactct
gtttctcacaccctcccccatcctgacgacctgaggggaactcaggtcac
aagagagggagagacagctctgaggagcctgtgcccatggaacaaaggcg
tgtaggcactccatccttggagcttggtcctcactccctagatgagctga
gcagagcatctcccttcagttacagccgctgtctagagctgatgctgcgc
tgcgtgtcgaaccacggtcccccgtgtcacctcatggtggcttcccacaa
tgaagaatccgttcgccaggcaactaagcggtatgaggttgaggggtggg
aaaccagagcctctaggaagcccctgtgtctacacgacagtgagggacgg
gtggtgagtggggggacaagaataaatccagcaagaaggagcccagggag
gaggatactacagatatttcatcccaacctgctatcgtgacacacacctc
ttagtccttaaggctgaggcaggaggatcaagacactgatgccaacatgg
gttacatagtaatctttaaaaaaaaaaatggactctatgcctacatatat
cctgtaggctcaggtgtgacagggcattgtcctgtatttactgtgacaca
gggagtactgaggattccataatgcagctaagactcacaagagagctcct
gggagttgtgattgattgattaatgatcgattgatttgatttgattttta
ttatatgtatgtgtatgtgtgcacccatgaatgcaagatgcaggggcagt
cagaagagggtgtcaggtcctctggaaccaaggctgcaggcagttgtgag
ctgcctgccttaggcactcggaactgaactggattctctgcaaaggaaga
gctctttattagatttatttaattttatttttaaaaggtatgttgggtat
ttgctgcatgcatatgtgtccaccatgtgcatgccggaacttacagaggc
agagagggcattcagatcctgtgaaccggacttagagacagcctgtgagc
tgcatgtgtgggtgccg
gaattccgcttcccgtctgacattggcgtctttgctaagggtcacattga
agtaacgctactccgggacaatctttaggtgagtgtgaagggtcgggatc
ctgggggaaccttgtccgttgcagagaagcgccccggggcttccctgacg
ccaagcagaaacttccggcggccacgggtccggtgtcctggagctaacca
ttatagccgcctttcttcatgatggctaggtcgctttctaagcagtccct
attactccatccttcagccctacaagtcccctttgatagcgttggggctg
gagtgtgaagcgccttacccgtggctataaggcaattcggatttagaccc
agtaaattggactgtggagcttttagttgcgagttcacaggcgtggccac
ccgcgttccaaggccgaagcctgtcgccttgactcgtgtctttcccctca
gcgtcatctttgatcaactctcaaaactcgagatattgtccaaaattact
tccgacactgagtcttttaaatcccccgtgcccaccttgcctccttcaat
gaacctgcccaaataccccacttgtttggactacttcagttgacactggc
acctctgtggtgtcaaggtcccccagatgctctagagacagtttctctca
ggtctgttgatattgactatgtcatctcttcagacatatcaaagctgaga
gaagtcgataaaactcaaggagctaaagtatttgaatgattggggggggg
gcggtttgcgtggggttctaatcgaattccagtatttacttccattagga
atggaggcagcaacgtcaatagatttggtagcctgggccattgtcagcag
gcaaatcacagatacctgacacatgccagttacaagagtcacaatcttca
gtcatggttacctccagttgtactttacttgttaagttctttgagctttt
ttatttttttggaagcggggtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_31294567_31295641
seq2: B6Ng01-257O19.b_41_1107

seq1  GAATTCTAGGCCTTGGCTATACTCGGTGAAACTGTGTGTCAGAAAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCCTTGGCTATACTCGGTGAAACTGTGTGTCAGAAAACTCT  50

seq1  GTTTCTCACACCCTCCCCCATCCTGACGACCTGAGGGGAACTCAGGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCACACCCTCCCCCATCCTGACGACCTGAGGGGAACTCAGGTCAC  100

seq1  AAGAGAGGGAGAGACAGCTCTGAGGAGCCTGTGCCCATGGAACAAAGGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGGAGAGACAGCTCTGAGGAGCCTGTGCCCATGGAACAAAGGCG  150

seq1  TGTAGGCACTCCATCCTTGGAGCTTGGTCCTCACTCCCTAGATGAGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCACTCCATCCTTGGAGCTTGGTCCTCACTCCCTAGATGAGCTGA  200

seq1  GCAGAGCATCTCCCTTCAGTTACAGCCGCTGTCTAGAGCTGATGCTGCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCATCTCCCTTCAGTTACAGCCGCTGTCTAGAGCTGATGCTGCGC  250

seq1  TGCGTGTCGAACCACGGTCCCCCGTGTCACCTCATGGTGGCTTCCCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTCGAACCACGGTCCCCCGTGTCACCTCATGGTGGCTTCCCACAA  300

seq1  TGAAGAATCCGTTCGCCAGGCAACTAAGCGGTATGAGGTTGAGGGGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATCCGTTCGCCAGGCAACTAAGCGGTATGAGGTTGAGGGGTGGG  350

seq1  AAACCAGAGCCTCTAGGAAGCCCCTGTGTCTACACGACAGTGAGGGACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGAGCCTCTAGGAAGCCCCTGTGTCTACACGACAGTGAGGGACGG  400

seq1  GTGGTGAGTGGGGGGACAAGAATAAATCCAGCAAGAAGGAGCCCAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAGTGGGGGGACAAGAATAAATCCAGCAAGAAGGAGCCCAGGGAG  450

seq1  GAGGATACTACAGATATTTCATCCCAACCTGCTATCGTGACACACACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATACTACAGATATTTCATCCCAACCTGCTATCGTGACACACACCTC  500

seq1  TTAGTCCTTAAGGCTGAGGCAGGAGGATCAAGACACTGATGCCAACATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCTTAAGGCTGAGGCAGGAGGATCAAGACACTGATGCCAACATGG  550

seq1  GTTACATAGTAATCTTTAAAAAAAAAAATGGACTCTATGCCTACATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATAGTAATCTTTAAAAAAAAAAATGGACTCTATGCCTACATATAT  600

seq1  CCTGTAGGCTCAGGTGTGACAGGGCATTGTCCTGTATTTACTGTGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGGCTCAGGTGTGACAGGGCATTGTCCTGTATTTACTGTGACACA  650

seq1  GGGAGTACTGAGGATTCCATAATGCAGCTAAGACTCACAAGAGAGCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTACTGAGGATTCCATAATGCAGCTAAGACTCACAAGAGAGCTCCT  700

seq1  GGGAGTTGTGATTGATTGATTAATGATCGATTGATTTGATTTGATTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGTGATTGATTGATTAATGATCGATTGATTTGATTTGATTTTTA  750

seq1  TTATATGTATGTGTATGTGTGCACCCATGAATGCAAGATGCAGGGGCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTATGTGTATGTGTGCACCCATGAATGCAAGATGCAGGGGCAGT  800

seq1  CAGAAGAGGGTGTCAGGTCCTCTGGAACCAAGGCTGCAGGCAGTTGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGGTGTCAGGTCCTCTGGAACCAAGGCTGCAGGCAGTTGTGAG  850

seq1  CTGCCTGCCTTAGGCACTCGGAACTGAACTGGGATTCTCTGCAAAGGAAG  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGCCTGCCTTAGGCACTCGGAACTGAACT-GGATTCTCTGCAAAGGAAG  899

seq1  AGCTCTTTATTAGATTTTATTTAATTTTTATTTTTAAAAGGTTATGTTTG  950
      |||||||||||||| ||||||||| |||||||||||||||| |||| |||
seq2  AGCTCTTTATTAGA-TTTATTTAA-TTTTATTTTTAAAAGG-TATG-TTG  945

seq1  GGTATTTTGCCTGCATGCATATGTGTCCACCATGTGCATGCCCGGGACTT  1000
      |||||||   |||||||||||||||||||||||||||||| |||| ||||
seq2  GGTATTT--GCTGCATGCATATGTGTCCACCATGTGCATG-CCGGAACTT  992

seq1  ACAGAGGCCAGAAGAGGGCA-TCAGATCCCGTGGAACCGGACTTAGAGAC  1049
      ||||||| ||| |||||||| |||||||| || |||||||||||||||||
seq2  ACAGAGG-CAG-AGAGGGCATTCAGATCCTGT-GAACCGGACTTAGAGAC  1039

seq1  AG-CTGTGAGCTGCA-GTGTGGGTGCCG  1075
      || |||||||||||| ||||||||||||
seq2  AGCCTGTGAGCTGCATGTGTGGGTGCCG  1067

seq1: chr7_31410163_31411147
seq2: B6Ng01-257O19.g_68_1045 (reverse)

seq1  CCCCCCCACCCCGCTCCAAAAAAAAAAAAAAAAAAAAGCTCAAAGGACTT  50
      ||||||||||||||| |      ||||||| |||||||||||||| ||||
seq2  CCCCCCCACCCCGCTTC-----CAAAAAAATAAAAAAGCTCAAAGAACTT  45

seq1  AACAAGTAAAGTACAACTGGAGGTAACCATGACTGAAGATTTGTGACTCT  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACAAGTAAAGTACAACTGGAGGTAACCATGACTGAAGA-TTGTGACTCT  94

seq1  TGTAACTGGCATGTGTCAGGTATCTGTGATTTTGCCTGCTGACAATGGCC  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTAACTGGCATGTGTCAGGTATCTGTGA-TTTGCCTGCTGACAATGGCC  143

seq1  CAGGCTACCAAATCTATTGACGTTGCTGCCTCCATTCCTAATGGAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTACCAAATCTATTGACGTTGCTGCCTCCATTCCTAATGGAAGTAA  193

seq1  ATACTGGAATTCGATTAGAACCCCACGCAAACCGCCCCCCCCCCAATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGAATTCGATTAGAACCCCACGCAAACCGCCCCCCCCCCAATCAT  243

seq1  TCAAATACTTTAGCTCCTTGAGTTTTATCGACTTCTCTCAGCTTTGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACTTTAGCTCCTTGAGTTTTATCGACTTCTCTCAGCTTTGATAT  293

seq1  GTCTGAAGAGATGACATAGTCAATATCAACAGACCTGAGAGAAACTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGAGATGACATAGTCAATATCAACAGACCTGAGAGAAACTGTCT  343

seq1  CTAGAGCATCTGGGGGACCTTGACACCACAGAGGTGCCAGTGTCAACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCATCTGGGGGACCTTGACACCACAGAGGTGCCAGTGTCAACTGA  393

seq1  AGTAGTCCAAACAAGTGGGGTATTTGGGCAGGTTCATTGAAGGAGGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCCAAACAAGTGGGGTATTTGGGCAGGTTCATTGAAGGAGGCAAG  443

seq1  GTGGGCACGGGGGATTTAAAAGACTCAGTGTCGGAAGTAATTTTGGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCACGGGGGATTTAAAAGACTCAGTGTCGGAAGTAATTTTGGACAA  493

seq1  TATCTCGAGTTTTGAGAGTTGATCAAAGATGACGCTGAGGGGAAAGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCGAGTTTTGAGAGTTGATCAAAGATGACGCTGAGGGGAAAGACAC  543

seq1  GAGTCAAGGCGACAGGCTTCGGCCTTGGAACGCGGGTGGCCACGCCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGGCGACAGGCTTCGGCCTTGGAACGCGGGTGGCCACGCCTGTG  593

seq1  AACTCGCAACTAAAAGCTCCACAGTCCAATTTACTGGGTCTAAATCCGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGCAACTAAAAGCTCCACAGTCCAATTTACTGGGTCTAAATCCGAA  643

seq1  TTGCCTTATAGCCACGGGTAAGGCGCTTCACACTCCAGCCCCAACGCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTATAGCCACGGGTAAGGCGCTTCACACTCCAGCCCCAACGCTAT  693

seq1  CAAAGGGGACTTGTAGGGCTGAAGGATGGAGTAATAGGGACTGCTTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGGACTTGTAGGGCTGAAGGATGGAGTAATAGGGACTGCTTAGAA  743

seq1  AGCGACCTAGCCATCATGAAGAAAGGCGGCTATAATGGTTAGCTCCAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACCTAGCCATCATGAAGAAAGGCGGCTATAATGGTTAGCTCCAGGA  793

seq1  CACCGGACCCGTGGCCGCCGGAAGTTTCTGCTTGGCGTCAGGGAAGCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGACCCGTGGCCGCCGGAAGTTTCTGCTTGGCGTCAGGGAAGCCCC  843

seq1  GGGGCGCTTCTCTGCAACGGACAAGGTTCCCCCAGGATCCCGACCCTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGCTTCTCTGCAACGGACAAGGTTCCCCCAGGATCCCGACCCTTCA  893

seq1  CACTCACCTAAAGATTGTCCCGGAGTAGCGTTACTTCAATGTGACCCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCTAAAGATTGTCCCGGAGTAGCGTTACTTCAATGTGACCCTTA  943

seq1  GCAAAGACGCCAATGTCAGACGGGAAGCGGAATTC  985
      |||||||||||||||||||||||||||||||||||
seq2  GCAAAGACGCCAATGTCAGACGGGAAGCGGAATTC  978