BAC Information

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BAC

Clone NameB6Ng01-261F12
Chromosome7 (Build37)
Map Location 6,847,302 - 6,946,040
singlet/doubletdoublet
Overlap geneUsp29
Upstream geneLOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, LOC627961
Downstream geneAurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261F12.bB6Ng01-261F12.g
ACCGA066036GA066037
length1,1781,169
definitionB6Ng01-261F12.b B6Ng01-261F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,944,872 - 6,946,040)(6,847,302 - 6,848,466)
sequence
ggaattcactatgaagcccgtgtcttgtcatgtacccaatggacaccctg
ggctgtgcaaagtagactggcctcaagcagtacatctttgtgagatagtt
ttacataatgtgcattcaaatgctgatttctgtgcaaggacacctaattg
ctattggatgttggcagtgtcataattgttgaatcatctcctgtctcaat
gttgtgtaaaaattgttctccatcacctctgattggctaaatgtggagag
cttttgaggttgcttctaggaaggtcaacctgatcaacccctagacacag
tgacaatgggactttgtttattgcctgtttgattactttgattattgtct
ggtttgttccttatttatgctttgttttttccttaactattttgtttatg
ccttaggactggccatatactttgtatgtacctagagtggtataaaagca
gaatggaaaaaaataaacaggcctccagcttcagaactggctagggtcat
gttacagtgttgtccagttgtctttttcttatcaatccttgttcccttcc
tgaagaacccattgactgactgatctggctgggtcagttaataaagatcg
aaatagccaatagctgggcaggtgagataaaataggattttccttcccag
tgaggggtcaaaggtggagatagagatcaagaagggagtcatgagggagt
cgtcatgaggagatgagggagcaggaggagccagggaaagactaagatgg
caggtaacaagacatgggactggaaaataggccaggccatcatagtcagg
tcagaatagatgaatttctttccagctgtaattcttgaagcttctgtata
aatataatctctgtgtcattatgtgggagtacacacaagaaagaccataa
ttaaactttttacatgacacagtcctcctgcctcagccacttgtaggcac
accccactacacttggttctttttcttcttctttttctctggaagaaagg
gatctcactatgtagccctagctgaacctcataagaacacacctgttctg
tttcctggagtgttagttagagcctgtactgataaaaacctagtggagga
aaacccccacctcaactctgattcggcatgcaactcaagaatcacaaaac
gaactacaatcttgatgtattacatgag
gaattcattaggtcaaagatgaatacaatggacatcaactactggcctac
gtaacatacacaggcacatgcatggacacatgcacacaaatacacacaca
cccaaaggcatacatgtatacacaggcacacatgcaagtgcacgtataca
tgcacacacatgcaagttcatacacacacaaatacaatgcggtctttatt
atcctattccatgttggctaaagaaatgtaacactcagaggagaggtgat
ggtgtagacctttactcccaacatggggaggcagaggcaggtggatcttt
gtgagttcaaggccagcctggtttacagagcgagttccaggacagccaag
gctacacagagaaaccccctctcaaaaacaaacaaacaaacaaacaaaac
aaaagaagaaagagaaaaaagaaagaagtgccgcctcagaacactcaggc
aataagatggctcatcaggtagagatgcttgctgctgagcttgaagacct
atgttctgtacctggaagcacatgatgataaaagggaaaaaatcaagtcc
tcaagctgtcctctgacctccatactagttctgtggtggtgcataaacac
atacccaggcatgtgtgaatacacacacacacgcgcgcacacgcacacgc
acacacacacaatttaattaagattttaattaaattttctaaaaatgaaa
tatgaccttcagacccagcacatcctgatgagaacatattctgtttcagt
agaaaatccatttaatgacacagctgctcaaaactttgtggggtttcccc
ctcaccttttctcccagggtacagagtgggcacacattttacatttacaa
ttattgctgtttcagatgacattcccatcaaggctttgacattaaatgac
aatgccgtgtctcaaaacccagcatgaaaagacacatctctactgaattg
ctaaaagcaatttttcattttaccaatcccagcccgagtctttgtcttcg
caacgccacgttaattctatatttgggaagaatggacttcactattgccc
tgagtcgtggacactgagaagaggcatgccttctcctgaggagctctcgg
actctgtctgctccactcttgaaacaaggccatcctcaggagcattattt
gcctcatgttttattcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6944872_6946040
seq2: B6Ng01-261F12.b_45_1222 (reverse)

seq1  CTCATGTAATTACATCAAGATGGTAG-TCTGTTTGTGATTCTTG-GGTGC  48
      ||||||||| ||||||||||| |||| ||  ||||||||||||| | |||
seq2  CTCATGTAA-TACATCAAGATTGTAGTTCGTTTTGTGATTCTTGAGTTGC  49

seq1  ATGCCGAATCAGGAGTTGA-GTGGGGG-TTTCCT-CACTAGG-TTCTATC  94
      ||||||||||| ||||||| ||||||| |||||| ||||||| || ||||
seq2  ATGCCGAATCA-GAGTTGAGGTGGGGGTTTTCCTCCACTAGGTTTTTATC  98

seq1  AGTACAAGCCTCT-ACTAACACT-CAGGGAACAGAAACAGGTGTGT--CT  140
      ||||| || |||| ||||||||| |||| ||||| |||||||||||   |
seq2  AGTAC-AGGCTCTAACTAACACTCCAGGAAACAG-AACAGGTGTGTTCTT  146

seq1  ATGA-GTTCAGCTAGGGCTACATAGTGAGAT-CCTTTC-TCCAGAGAAAA  187
      |||| |||||||||||||||||||||||||| |||||| |||||||||||
seq2  ATGAGGTTCAGCTAGGGCTACATAGTGAGATCCCTTTCTTCCAGAGAAAA  196

seq1  AGAAGAAGAAAAAGAAACCAAGTGTAGTGGGGTGTGCCTACAAGTGGCTG  237
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAAAAG-AACCAAGTGTAGTGGGGTGTGCCTACAAGTGGCTG  245

seq1  AGGCAGGAGGACTGTGTCATGT-AAAAGTTTAATTATGGTCTTTCTTGTG  286
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGCAGGAGGACTGTGTCATGTAAAAAGTTTAATTATGGTCTTTCTTGTG  295

seq1  TGTACTCCCACATAATGACACAGAGATTATATTTATACAGAAGCTTCAAG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCCACATAATGACACAGAGATTATATTTATACAGAAGCTTCAAG  345

seq1  AATTACAGCTGGAAAGAAATTCATCTATTCTGACCTGACTATGATGGCCT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGCTGGAAAGAAATTCATCTATTCTGACCTGACTATGATGGCCT  395

seq1  GGCCTATTTTCCAGTCCCATGTCTTGTTACCTGCCATCTTAGTCTTTCCC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATTTTCCAGTCCCATGTCTTGTTACCTGCCATCTTAGTCTTTCCC  445

seq1  TGGCTCCTCCTGCTCCCTCATCTCCTCATGACGACTCCCTCATGACTCCC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTCCTGCTCCCTCATCTCCTCATGACGACTCCCTCATGACTCCC  495

seq1  TTCTTGATCTCTATCTCCACCTTTGACCCCTCACTGGGAAGGAAAATCCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATCTCTATCTCCACCTTTGACCCCTCACTGGGAAGGAAAATCCT  545

seq1  ATTTTATCTCACCTGCCCAGCTATTGGCTATTTCGATCTTTATTAACTGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCTCACCTGCCCAGCTATTGGCTATTTCGATCTTTATTAACTGA  595

seq1  CCCAGCCAGATCAGTCAGTCAATGGGTTCTTCAGGAAGGGAACAAGGATT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCAGATCAGTCAGTCAATGGGTTCTTCAGGAAGGGAACAAGGATT  645

seq1  GATAAGAAAAAGACAACTGGACAACACTGTAACATGACCCTAGCCAGTTC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAAAAAGACAACTGGACAACACTGTAACATGACCCTAGCCAGTTC  695

seq1  TGAAGCTGGAGGCCTGTTTATTTTTTTCCATTCTGCTTTTATACCACTCT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGGAGGCCTGTTTATTTTTTTCCATTCTGCTTTTATACCACTCT  745

seq1  AGGTACATACAAAGTATATGGCCAGTCCTAAGGCATAAACAAAATAGTTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACATACAAAGTATATGGCCAGTCCTAAGGCATAAACAAAATAGTTA  795

seq1  AGGAAAAAACAAAGCATAAATAAGGAACAAACCAGACAATAATCAAAGTA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAACAAAGCATAAATAAGGAACAAACCAGACAATAATCAAAGTA  845

seq1  ATCAAACAGGCAATAAACAAAGTCCCATTGTCACTGTGTCTAGGGGTTGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACAGGCAATAAACAAAGTCCCATTGTCACTGTGTCTAGGGGTTGA  895

seq1  TCAGGTTGACCTTCCTAGAAGCAACCTCAAAAGCTCTCCACATTTAGCCA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTGACCTTCCTAGAAGCAACCTCAAAAGCTCTCCACATTTAGCCA  945

seq1  ATCAGAGGTGATGGAGAACAATTTTTACACAACATTGAGACAGGAGATGA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGTGATGGAGAACAATTTTTACACAACATTGAGACAGGAGATGA  995

seq1  TTCAACAATTATGACACTGCCAACATCCAATAGCAATTAGGTGTCCTTGC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAATTATGACACTGCCAACATCCAATAGCAATTAGGTGTCCTTGC  1045

seq1  ACAGAAATCAGCATTTGAATGCACATTATGTAAAACTATCTCACAAAGAT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATCAGCATTTGAATGCACATTATGTAAAACTATCTCACAAAGAT  1095

seq1  GTACTGCTTGAGGCCAGTCTACTTTGCACAGCCCAGGGTGTCCATTGGGT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCTTGAGGCCAGTCTACTTTGCACAGCCCAGGGTGTCCATTGGGT  1145

seq1  ACATGACAAGACACGGGCTTCATAGTGAATTCC  1169
      |||||||||||||||||||||||||||||||||
seq2  ACATGACAAGACACGGGCTTCATAGTGAATTCC  1178

seq1: chr7_6847302_6848466
seq2: B6Ng01-261F12.g_67_1235

seq1  GAATTCATTAGGTCAAAGATGAATACAATGGACATCAACTACTGGCCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGTCAAAGATGAATACAATGGACATCAACTACTGGCCTAC  50

seq1  GTAACATACACAGGCACATGCATGGACACATGCACACAAATACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATACACAGGCACATGCATGGACACATGCACACAAATACACACACA  100

seq1  CCCAAAGGCATACATGTATACACAGGCACACATGCAAGTGCACGTATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGCATACATGTATACACAGGCACACATGCAAGTGCACGTATACA  150

seq1  TGCACACACATGCAAGTTCATACACACACAAATACAATGCGGTCTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACATGCAAGTTCATACACACACAAATACAATGCGGTCTTTATT  200

seq1  ATCCTATTCCATGTTGGCTAAAGAAATGTAACACTCAGAGGAGAGGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATTCCATGTTGGCTAAAGAAATGTAACACTCAGAGGAGAGGTGAT  250

seq1  GGTGTAGACCTTTACTCCCAACATGGGGAGGCAGAGGCAGGTGGATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGACCTTTACTCCCAACATGGGGAGGCAGAGGCAGGTGGATCTTT  300

seq1  GTGAGTTCAAGGCCAGCCTGGTTTACAGAGCGAGTTCCAGGACAGCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCAAGGCCAGCCTGGTTTACAGAGCGAGTTCCAGGACAGCCAAG  350

seq1  GCTACACAGAGAAACCCCCTCTCAAAAACAAACAAACAAACAAACAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGAAACCCCCTCTCAAAAACAAACAAACAAACAAACAAAAC  400

seq1  AAAAGAAGAAAGAGAAAAAAGAAAGAAGTGCCGCCTCAGAACACTCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAAAGAGAAAAAAGAAAGAAGTGCCGCCTCAGAACACTCAGGC  450

seq1  AATAAGATGGCTCATCAGGTAGAGATGCTTGCTGCTGAGCTTGAAGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATGGCTCATCAGGTAGAGATGCTTGCTGCTGAGCTTGAAGACCT  500

seq1  ATGTTCTGTACCTGGAAGCACATGATGATAAAAGGGAAAAAATCAAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGTACCTGGAAGCACATGATGATAAAAGGGAAAAAATCAAGTCC  550

seq1  TCAAGCTGTCCTCTGACCTCCATACTAGTTCTGTGGTGGTGCATAAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTGTCCTCTGACCTCCATACTAGTTCTGTGGTGGTGCATAAACAC  600

seq1  ATACCCAGGCATGTGTGAATACACACACACACGCGCGCACACGCACACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAGGCATGTGTGAATACACACACACACGCGCGCACACGCACACGC  650

seq1  ACACACACACAATTTAATTAAGATTTTAATTAAATTTTCTAAAAATGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAATTTAATTAAGATTTTAATTAAATTTTCTAAAAATGAAA  700

seq1  TATGACCTTCAGACCCAGCACATCCTGATGAGAACATATTCTGTTTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCTTCAGACCCAGCACATCCTGATGAGAACATATTCTGTTTCAGT  750

seq1  AGAAAATCCATTTAATGACACAGCTGCTCAAAACTTTGTGGGGTTTCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCCATTTAATGACACAGCTGCTCAAAACTTTGTGGGGTTTCCCC  800

seq1  CTCACCTTTTCTCCCAGGGTACAGAGTGGGCACACATTTTACA-TTACAA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTCACCTTTTCTCCCAGGGTACAGAGTGGGCACACATTTTACATTTACAA  850

seq1  TTATTGCTGTTTCAGATGACATTCCCATCAAGGCTTTGACATTTAAATGA  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTATTGCTGTTTCAGATGACATTCCCATCAAGGCTTTGACA-TTAAATGA  899

seq1  CAAATGCCGTGTCTCAAAACCCAGCATGAAAAGACACATCTCTACTGAAT  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AATGCCGTGTCTCAAAACCCAGCATGAAAAGACACATCTCTACTGAAT  948

seq1  TGCTAAAAGCAA-TTTTCA-TTTACCAATTCCCAGCCCGAG-CCTTGTCT  996
      |||||||||||| |||||| |||||||| |||||||||||| | ||||||
seq2  TGCTAAAAGCAATTTTTCATTTTACCAA-TCCCAGCCCGAGTCTTTGTCT  997

seq1  TCGCACCGCCACGTAATTCCTATAATTTGGAAGA--TGAC-TCACTAT--  1041
      ||||| |||||||| | | ||||| || ||||||   ||| |||||||  
seq2  TCGCAACGCCACGTTAATTCTATATTTGGGAAGAATGGACTTCACTATTG  1047

seq1  GCCTGAGTCGT-GACACTGAG-AGAGGCATGCC-TCTCCTGAGGAGCTCT  1088
       |||||||||| ||||||||| ||||||||||| ||||||||||||||||
seq2  CCCTGAGTCGTGGACACTGAGAAGAGGCATGCCTTCTCCTGAGGAGCTCT  1097

seq1  CGGACTCTGTCCGGCTCACTCTTTGAAACAAAG-CATCTTCCAGAAGGCA  1137
      ||||||||||| |   ||||| ||||||||| | |||| | ||| ||   
seq2  CGGACTCTGTCTGCTCCACTC-TTGAAACAAGGCCATCCT-CAGGAG--C  1143

seq1  ATTATTTTGCCTCATGTTTTTATTCTTT  1165
      |||| ||||||||||| |||||||||||
seq2  ATTA-TTTGCCTCATG-TTTTATTCTTT  1169