BAC Information

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BAC

Clone NameB6Ng01-262J18
Chromosome7 (Build37)
Map Location 32,417,253 - 32,570,918
singlet/doubletdoublet
Overlap geneLOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340
Upstream geneEtv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233
Downstream geneLOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361, LOC668362, EG624584, LOC100043355, LOC546951, EG626740, EG668371, EG668377, LOC100043842, LOC634929, EG668379, EG668381, LOC668386, LOC626373, EG384589, EG668393, EG330689, LOC100043362, LOC100043365, EG384591, LOC668398, EG384596, LOC100043370, LOC434161, EG270499, LOC100043845
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262J18.bB6Ng01-262J18.g
ACCGA066981GA066982
length1,1221,026
definitionB6Ng01-262J18.b B6Ng01-262J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,569,812 - 32,570,918)(32,417,253 - 32,417,841)
sequence
gaattccagatgacccttcaaccccctctacctgggcctgtagtagagca
tctctcactgcacagggacatcaggggactgttggaaggatgctaagagg
caagactgtggtaggccccctgttccacccaccttggcaatggactgctt
aagcccattctctgagatagagagaaactgtcacccctggtattgccatt
ttaggcttcatgaaagggttcttttgacagtcttttgtccttctttagga
agtgtgggctgaacaaacaccaatggaggaggctgaagacagtagagcaa
agcctgaggcagacatgtgaaggctgaagggtcagcaggatgagctatga
aatcggccaagaggtttactgctctatggtagttgaagtatttgacgggg
gaaatgcaggagagtgtaggtagggtcatggaatgaagagagaaagagga
agactctgaagaagaacacaatggatccagaggacaggataattagaacc
caattgccagaagtggtctaggaatttgtacagtctttggagactacact
agggcctgtagactcatcatggcagagtgccaaaaaggctcagcttcctg
tccatgctgtggagaatctgtagcacaggtaggcctcagggtcatatgtt
agtaagaggactgctcaggagagtataccactgctgcctctaccatgtgc
tacctgttggatttaatcccttgctgctgtgtattaaaatgctaagtact
ggaatccagggaatgggatctcccaaacctccaactacttgccaatctct
ttaacaaattctcacatacaacagatgttgcttagtaaattagttcacct
atatctctcactatctaacaaaatgtgactgccaggcaatgatggagagg
agagaggtatttctgggattttttttttctaggctgtggtgtcacaggta
gggatcataaaggcaacagaaggaggagagaagaagaggaaaaaagattg
aagaaaaggggaaggcttgcccatggggccctgatgtctcaggagccaca
tgaccaggagctggtggaccattgagaacagcctgaatgagaagaaatac
cctgggccaacactttaaacag
gaattccccagacaaggtagataagaattagtagaagcctattgcatatg
catgccacattataccagtgcataaatcagactcagaaagatatagagag
attttagacccacttctggtaacttggtaggaatttgacattgagcgata
acaaggaagtaggcttcatgcaagtatttgactttgggctaggataggga
agtaggctcagatatcttggtcatccagttaagcccctagaaacagtgat
tatgggactttgtttactgccttgcttattccttaattatttgtgtgtat
tgccttgtttgtttcttaatctggaactgaccttattacttgcctgtaat
taaaatgatatacaagcagacttgggaaaaaacacacctgcttcagtctc
agaactggctggggtcatgctacaatgttgtctaattttcttttttcttt
ttatccttgctcctgccctggagaacctgttgattgactgagctgacttt
gtcagatcttatgttaacattggagctctattaagtcgtataaagtgaag
gacaccttgggaattggaagtgcagaataatttttatagatgatcttagt
ctttggaccctgagtaatgatagtttacaccctagacatgagagagaata
ggtatcagaaaaacattccttcccaattgtccagggaatgtttgaaaatg
aatgtaagctgtttcagagctcctctaaggacagacggaagtcaagagac
atggggctcctctatggcttctatgggaggaatgtttatttctggttctg
gttcttttaggtagtatatctaattccctttggcacatctagttctctcc
tctctgcctattttctgtccttggcatgctaatctgtccatgtctgtcag
tttatgtttgtgtattgtttcattgttccttgtactgtgtttcatgtcaa
agaaaaaaaaaacattgttaaacttaactgctgtgctcaccccttgattt
gtttttaactcactgaaaaaaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_32569812_32570918
seq2: B6Ng01-262J18.b_49_1170 (reverse)

seq1  CTGTTT-AAGTGTT-GCCCAGGGTTATTTCTTCTCCATCAGCCTGTTCTC  48
      |||||| ||||||| |||||||| |||||||||||  |||| ||||||||
seq2  CTGTTTAAAGTGTTGGCCCAGGG-TATTTCTTCTCATTCAGGCTGTTCTC  49

seq1  -ATGGTCCA-CAGCTCCTGGTCATGT-GCTCCTGAGACATCA-GGCCCCA  94
       |||||||| |||||||||||||||| ||||||||||||||| |||||||
seq2  AATGGTCCACCAGCTCCTGGTCATGTGGCTCCTGAGACATCAGGGCCCCA  99

seq1  TGG--CAGCCTTCCCCTTT--CTCCATC-TTTTTCCTCTTCTTCTCTCCT  139
      |||   |||||||||||||   || ||| |||||||||||||||||||||
seq2  TGGGCAAGCCTTCCCCTTTTCTTCAATCTTTTTTCCTCTTCTTCTCTCCT  149

seq1  -CTTCTGTTGCC-TTATGATCCCTACCTGTGACA-CACAGCCTAG-AAAA  185
       ||||||||||| ||||||||||||||||||||| |||||||||| ||||
seq2  CCTTCTGTTGCCTTTATGATCCCTACCTGTGACACCACAGCCTAGAAAAA  199

seq1  AAAAATCCCAG-AATACCTCTCTCCTCTCCATCATTGCCTGGCAGTCACA  234
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCCAGAAATACCTCTCTCCTCTCCATCATTGCCTGGCAGTCACA  249

seq1  TTTTGTTAGATAGTGAGAGATATAGGTGAACTAATTTACTAAGCAACATC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAGATAGTGAGAGATATAGGTGAACTAATTTACTAAGCAACATC  299

seq1  TGTTGTATGTGAGAATTTGTTAAAGAGATTGGCAAGTAGTTGGAGGTTTG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTATGTGAGAATTTGTTAAAGAGATTGGCAAGTAGTTGGAGGTTTG  349

seq1  GGAGATCCCATTCCCTGGATTCCAGTACTTAGCATTTTAATACACAGCAG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCCCATTCCCTGGATTCCAGTACTTAGCATTTTAATACACAGCAG  399

seq1  CAAGGGATTAAATCCAACAGGTAGCACATGGTAGAGGCAGCAGTGGTATA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGATTAAATCCAACAGGTAGCACATGGTAGAGGCAGCAGTGGTATA  449

seq1  CTCTCCTGAGCAGTCCTCTTACTAACATATGACCCTGAGGCCTACCTGTG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGAGCAGTCCTCTTACTAACATATGACCCTGAGGCCTACCTGTG  499

seq1  CTACAGATTCTCCACAGCATGGACAGGAAGCTGAGCCTTTTTGGCACTCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATTCTCCACAGCATGGACAGGAAGCTGAGCCTTTTTGGCACTCT  549

seq1  GCCATGATGAGTCTACAGGCCCTAGTGTAGTCTCCAAAGACTGTACAAAT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATGAGTCTACAGGCCCTAGTGTAGTCTCCAAAGACTGTACAAAT  599

seq1  TCCTAGACCACTTCTGGCAATTGGGTTCTAATTATCCTGTCCTCTGGATC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGACCACTTCTGGCAATTGGGTTCTAATTATCCTGTCCTCTGGATC  649

seq1  CATTGTGTTCTTCTTCAGAGTCTTCCTCTTTCTCTCTTCATTCCATGACC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTTCTTCTTCAGAGTCTTCCTCTTTCTCTCTTCATTCCATGACC  699

seq1  CTACCTACACTCTCCTGCATTTCCCCCGTCAAATACTTCAACTACCATAG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTACACTCTCCTGCATTTCCCCCGTCAAATACTTCAACTACCATAG  749

seq1  AGCAGTAAACCTCTTGGCCGATTTCATAGCTCATCCTGCTGACCCTTCAG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAAACCTCTTGGCCGATTTCATAGCTCATCCTGCTGACCCTTCAG  799

seq1  CCTTCACATGTCTGCCTCAGGCTTTGCTCTACTGTCTTCAGCCTCCTCCA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACATGTCTGCCTCAGGCTTTGCTCTACTGTCTTCAGCCTCCTCCA  849

seq1  TTGGTGTTTGTTCAGCCCACACTTCCTAAAGAAGGACAAAAGACTGTCAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTTGTTCAGCCCACACTTCCTAAAGAAGGACAAAAGACTGTCAA  899

seq1  AAGAACCCTTTCATGAAGCCTAAAATGGCAATACCAGGGGTGACAGTTTC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCTTTCATGAAGCCTAAAATGGCAATACCAGGGGTGACAGTTTC  949

seq1  TCTCTATCTCAGAGAATGGGCTTAAGCAGTCCATTGCCAAGGTGGGTGGA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCTCAGAGAATGGGCTTAAGCAGTCCATTGCCAAGGTGGGTGGA  999

seq1  ACAGGGGGCCTACCACAGTCTTGCCTCTTAGCATCCTTCCAACAGTCCCC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGGCCTACCACAGTCTTGCCTCTTAGCATCCTTCCAACAGTCCCC  1049

seq1  TGATGTCCCTGTGCAGTGAGAGATGCTCTACTACAGGCCCAGGTAGAGGG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCCCTGTGCAGTGAGAGATGCTCTACTACAGGCCCAGGTAGAGGG  1099

seq1  GGTTGAAGGGTCATCTGGAATTC  1107
      |||||||||||||||||||||||
seq2  GGTTGAAGGGTCATCTGGAATTC  1122

seq1: chr7_32417253_32417841
seq2: B6Ng01-262J18.g_65_653

seq1  GAATTCCCCAGACAAGGTAGATAAGAATTAGTAGAAGCCTATTGCATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGACAAGGTAGATAAGAATTAGTAGAAGCCTATTGCATATG  50

seq1  CATGCCACATTATACCAGTGCATAAATCAGACTCAGAAAGATATAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACATTATACCAGTGCATAAATCAGACTCAGAAAGATATAGAGAG  100

seq1  ATTTTAGACCCACTTCTGGTAACTTGGTAGGAATTTGACATTGAGCGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGACCCACTTCTGGTAACTTGGTAGGAATTTGACATTGAGCGATA  150

seq1  ACAAGGAAGTAGGCTTCATGCAAGTATTTGACTTTGGGCTAGGATAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAGTAGGCTTCATGCAAGTATTTGACTTTGGGCTAGGATAGGGA  200

seq1  AGTAGGCTCAGATATCTTGGTCATCCAGTTAAGCCCCTAGAAACAGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTCAGATATCTTGGTCATCCAGTTAAGCCCCTAGAAACAGTGAT  250

seq1  TATGGGACTTTGTTTACTGCCTTGCTTATTCCTTAATTATTTGTGTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGACTTTGTTTACTGCCTTGCTTATTCCTTAATTATTTGTGTGTAT  300

seq1  TGCCTTGTTTGTTTCTTAATCTGGAACTGACCTTATTACTTGCCTGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTTTGTTTCTTAATCTGGAACTGACCTTATTACTTGCCTGTAAT  350

seq1  TAAAATGATATACAAGCAGACTTGGGAAAAAACACACCTGCTTCAGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGATATACAAGCAGACTTGGGAAAAAACACACCTGCTTCAGTCTC  400

seq1  AGAACTGGCTGGGGTCATGCTACAATGTTGTCTAATTTTCTTTTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGCTGGGGTCATGCTACAATGTTGTCTAATTTTCTTTTTTCTTT  450

seq1  TTATCCTTGCTCCTGCCCTGGAGAACCTGTTGATTGACTGAGCTGACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTGCTCCTGCCCTGGAGAACCTGTTGATTGACTGAGCTGACTTT  500

seq1  GTCAGATCTTATGTTAACATTGGAGCTCTATTAAGTCGTATAAAGTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATCTTATGTTAACATTGGAGCTCTATTAAGTCGTATAAAGTGAAG  550

seq1  GACACCTTGGGAATTGGAAGTGCAGAATAATTTTTATAG  589
      |||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTGGGAATTGGAAGTGCAGAATAATTTTTATAG  589