BAC Information

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BAC

Clone NameB6Ng01-264J03
Chromosome7 (Build37)
Map Location 104,667,956 - 104,784,442
singlet/doubletdoublet
Overlap geneInts4, 1810020D17Rik, Rsf1, LOC622994
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14
Downstream geneLOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264J03.bB6Ng01-264J03.g
ACCGA068442GA068443
length1,1921,056
definitionB6Ng01-264J03.b B6Ng01-264J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,783,243 - 104,784,442)(104,667,956 - 104,669,016)
sequence
gaattcagaaacccaatctacattgcatactacttagatccatcagaaat
atttactaatgcctgtaacaacttaagaaagaatctctggaggtggagaa
atggctcagtggttaggaacacttgctactcttgaagagtaccccagttc
agttcccagcactcacacgatggcttgcaaacatccacgactccagtcca
gaaagatctgatgccctcttctgaccttggagggcaccaggtacatgtgt
gatacatatacatatatacaggcaaaacacatataaaataaacatacata
taaaaactaaagtaaataaatctaaaaaacattaacaatgttttaaaaaa
ttaaaaaatactttctcttgctttttatctgttcaacaactttgtgtatt
ttgtggatatattttttccatatgagattaattatttgataatctttcaa
aaggaaggcaaggggaacagcttgttcatttttatcactagacagaaatt
caaaaccatgtcaaattctacagatatattcaatagaagctctcttcaaa
tcagtgtcttctttattattagtacagtataaattccactgataggcatt
ttacaacttctgtaacagcctttaacttgaatgttttagaattcttttcc
tacataagccaaatcagagccactgtaacagactgaagagaaaacatgtg
gaaatgttccactcaaaagttagtgcgaatctagcgtggggtcatactgc
acagaggtggagtgagaaggacaacaaggttcagacatgcctggagtgaa
cagtgacaccttgtctcacataacacaaagagtggagtaagctctcttcc
caggaaaacctctttcttagagtctttcatgagaagctaggaaagatcca
tgtgctaaatttccagagggatccgacttctcagaccatgtgattgtgtt
ttgtttttcagcaataaaaggtgatgatgaagatgaagacgatcttggag
gctggtaagtgcataaaacattatgcaatgcatctgccaatgtcatggaa
tttttattgttattgtaacaaaacagcaaattggagctaaaggcagtaga
gcaattaagaagaggcatggttctgaccgggcaatggttaaataagattg
caggaacgaacgggaacagaggaatgattcagccagcctttt
gaattcagagccattctggtttacagatcacattccaggacagtcaaggc
tacacagagaaccctgtttcaggagaaaaaaaagcaaaccagaaagaaag
agttagaaagactctttgatcctttctttcttgtatattagttaaatgag
tgacagacacacagggaaacaatggtttagtaagacagcagattcaccct
cccttagccttaggactaaggtcatcataggtccatgctcattttttcct
aggtctgtcttctgtctgtgtctgtgttttcccactatctctatttctag
tctattttttcctgtgggaagaagaaaaggccttcattctgcatttctta
ctttgaaagacaggtcccaaaaggtgtatcttccagttttccatagtgtt
gactggaaacagtcacatgattctctctctcattagggaacctgggtcag
tgatctgtattctaggtgactagtgtctgtgtgatggtggctctattagg
aagatgctctgctgcacaacatggcccatataatgggaaatagtgtcctg
ccaaccttttccagcaagtttgctgacgcttttgtatactatgggccagc
catagctctgggagccagggttccactgctcttggtagctatgtgaagtg
ggcttcagctctgtttttcttttctccttctccatgatagtgtgtagttt
tggaggccactaatagaggcttctggccccaagcccaggaaaataagctt
tgattcctgattcattcccatctaattaagcatttagggcttgtccttga
cggtttattgtgttggcactaaagcaaatgcagaatgcataaaaacaagc
caacatgtttagtttgtttagctgtggtactgttagtaggtcttagtaaa
tacctgctgggttgcattgtcttcatgagctggtgtttttttcttttata
ttttatttatatgttttctctatggtgtgtgtgtgtgtgtctctggtgag
tgcctggagcgtctgcgggtgctatattccctcatgtgtaaataaagcat
acatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_104783243_104784442
seq2: B6Ng01-264J03.b_44_1235 (reverse)

seq1  AAAAGGCT-GCTGAATCATTCTCTCTTGTCTCCTGTCTGTTTCTTTCAAA  49
      |||||||| |||||||||||| ||| ||| ||| || |  ||| | ||| 
seq2  AAAAGGCTGGCTGAATCATTC-CTC-TGT-TCCCGT-TCGTTCCTGCAA-  45

seq1  TCTCTATTTTAACCAATGCCCGGGTTCCAGAACAATTCCTCTTCTTATTT  99
        |||  |||||||| |||||||    |||||| || ||||||||||  |
seq2  --TCTTATTTAACCATTGCCCGG---TCAGAACCATGCCTCTTCTTA-AT  89

seq1  TGCTTCTACTGCTTTAACCCTCATTTTGCTG-TTTGTTACAATAACAATA  148
      ||| |||||||| || | |  || ||||||| ||||||||||||||||||
seq2  TGC-TCTACTGCCTTTAGCTCCAATTTGCTGTTTTGTTACAATAACAATA  138

seq1  AAAATTCCATGACATTGGCAGATGCATTGCATAATGTTTTATGCACTTAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCATGACATTGGCAGATGCATTGCATAATGTTTTATGCACTTAC  188

seq1  CAGCCTCCAAGATCGTCTTCATCTTCATCATCACCCTTTTATTGCTGAAA  248
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGCCTCCAAGATCGTCTTCATCTTCATCATCA-CCTTTTATTGCTGAAA  237

seq1  A--CAAACACAATCACATGGTCTGAGAAGTCGGATCCCTCTGG-AATTTA  295
      |   ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACAAAACACAATCACATGGTCTGAGAAGTCGGATCCCTCTGGAAATTTA  287

seq1  GCACATGGATCTTTCCTAGCTTCTCATGAAAGACTCTAAGAAAGAGGTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGATCTTTCCTAGCTTCTCATGAAAGACTCTAAGAAAGAGGTTT  337

seq1  TCCTGGGAAGAGAGCTTACTCCACTCTTTGTGTTATGTGAGACAAGGTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAAGAGAGCTTACTCCACTCTTTGTGTTATGTGAGACAAGGTGT  387

seq1  CACTGTTCACTCCAGGCATGTCTGAACCTTGTTGTCCTTCTCACTCCACC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTCACTCCAGGCATGTCTGAACCTTGTTGTCCTTCTCACTCCACC  437

seq1  TCTGTGCAGTATGACCCCACGCTAGATTCGCACTAACTTTTGAGTGGAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCAGTATGACCCCACGCTAGATTCGCACTAACTTTTGAGTGGAAC  487

seq1  ATTTCCACATGTTTTCTCTTCAGTCTGTTACAGTGGCTCTGATTTGGCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACATGTTTTCTCTTCAGTCTGTTACAGTGGCTCTGATTTGGCTT  537

seq1  ATGTAGGAAAAGAATTCTAAAACATTCAAGTTAAAGGCTGTTACAGAAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGAAAAGAATTCTAAAACATTCAAGTTAAAGGCTGTTACAGAAGT  587

seq1  TGTAAAATGCCTATCAGTGGAATTTATACTGTACTAATAATAAAGAAGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATGCCTATCAGTGGAATTTATACTGTACTAATAATAAAGAAGAC  637

seq1  ACTGATTTGAAGAGAGCTTCTATTGAATATATCTGTAGAATTTGACATGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTGAAGAGAGCTTCTATTGAATATATCTGTAGAATTTGACATGG  687

seq1  TTTTGAATTTCTGTCTAGTGATAAAAATGAACAAGCTGTTCCCCTTGCCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATTTCTGTCTAGTGATAAAAATGAACAAGCTGTTCCCCTTGCCT  737

seq1  TCCTTTTGAAAGATTATCAAATAATTAATCTCATATGGAAAAAATATATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGAAAGATTATCAAATAATTAATCTCATATGGAAAAAATATATC  787

seq1  CACAAAATACACAAAGTTGTTGAACAGATAAAAAGCAAGAGAAAGTATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATACACAAAGTTGTTGAACAGATAAAAAGCAAGAGAAAGTATTT  837

seq1  TTTAATTTTTTAAAACATTGTTAATGTTTTTTAGATTTATTTACTTTAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTTTAAAACATTGTTAATGTTTTTTAGATTTATTTACTTTAGT  887

seq1  TTTTATATGTATGTTTATTTTATATGTGTTTTGCCTGTATATATGTATAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATGTATGTTTATTTTATATGTGTTTTGCCTGTATATATGTATAT  937

seq1  GTATCACACATGTACCTGGTGCCCTCCAAGGTCAGAAGAGGGCATCAGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACACATGTACCTGGTGCCCTCCAAGGTCAGAAGAGGGCATCAGAT  987

seq1  CTTTCTGGACTGGAGTCGTGGATGTTTGCAAGCCATCGTGTGAGTGCTGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGACTGGAGTCGTGGATGTTTGCAAGCCATCGTGTGAGTGCTGG  1037

seq1  GAACTGAACTGGGGTACTCTTCAAGAGTAGCAAGTGTTCCTAACCACTGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAACTGGGGTACTCTTCAAGAGTAGCAAGTGTTCCTAACCACTGA  1087

seq1  GCCATTTCTCCACCTCCAGAGATTCTTTCTTAAGTTGTTACAGGCATTAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCTCCACCTCCAGAGATTCTTTCTTAAGTTGTTACAGGCATTAG  1137

seq1  TAAATATTTCTGATGGATCTAAGTAGTATGCAATGTAGATTGGGTTTCTG  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTCTGATGGATCTAAGTAGTATGCAATGTAGATTGGGTTTCTG  1187

seq1  AATTC  1200
      |||||
seq2  AATTC  1192

seq1: chr7_104667956_104669016
seq2: B6Ng01-264J03.g_69_1124

seq1  GAATTCAGAGCCATTCTGGTTTACAGATCACATTCCAGGACAGTCAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCCATTCTGGTTTACAGATCACATTCCAGGACAGTCAAGGC  50

seq1  TACACAGAGAACCCTGTTTCAGGAGAAAAAAAAGCAAACCAGAAAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAACCCTGTTTCAGGAGAAAAAAAAGCAAACCAGAAAGAAAG  100

seq1  AGTTAGAAAGACTCTTTGATCCTTTCTTTCTTGTATATTAGTTAAATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAAGACTCTTTGATCCTTTCTTTCTTGTATATTAGTTAAATGAG  150

seq1  TGACAGACACACAGGGAAACAATGGTTTAGTAAGACAGCAGATTCACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGACACACAGGGAAACAATGGTTTAGTAAGACAGCAGATTCACCCT  200

seq1  CCCTTAGCCTTAGGACTAAGGTCATCATAGGTCCATGCTCATTTTTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGCCTTAGGACTAAGGTCATCATAGGTCCATGCTCATTTTTTCCT  250

seq1  AGGTCTGTCTTCTGTCTGTGTCTGTGTTTTCCCACTATCTCTATTTCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTCTTCTGTCTGTGTCTGTGTTTTCCCACTATCTCTATTTCTAG  300

seq1  TCTATTTTTTCCTGTGGGAAGAAGAAAAGGCCTTCATTCTGCATTTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTTCCTGTGGGAAGAAGAAAAGGCCTTCATTCTGCATTTCTTA  350

seq1  CTTTGAAAGACAGGTCCCAAAAGGTGTATCTTCCAGTTTTCCATAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAGACAGGTCCCAAAAGGTGTATCTTCCAGTTTTCCATAGTGTT  400

seq1  GACTGGAAACAGTCACATGATTCTCTCTCTCATTAGGGAACCTGGGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAACAGTCACATGATTCTCTCTCTCATTAGGGAACCTGGGTCAG  450

seq1  TGATCTGTATTCTAGGTGACTAGTGTCTGTGTGATGGTGGCTCTATTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTATTCTAGGTGACTAGTGTCTGTGTGATGGTGGCTCTATTAGG  500

seq1  AAGATGCTCTGCTGCACAACATGGCCCATATAATGGGAAATAGTGTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTCTGCTGCACAACATGGCCCATATAATGGGAAATAGTGTCCTG  550

seq1  CCAACCTTTTCCAGCAAGTTTGCTGACGCTTTTGTATACTATGGGCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTTTTCCAGCAAGTTTGCTGACGCTTTTGTATACTATGGGCCAGC  600

seq1  CATAGCTCTGGGAGCCAGGGTTCCACTGCTCTTGGTAGCTATGTGAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTCTGGGAGCCAGGGTTCCACTGCTCTTGGTAGCTATGTGAAGTG  650

seq1  GGCTTCAGCTCTGTTTTTCTTTTCTCCTTCTCCATGATAGTGTGTAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAGCTCTGTTTTTCTTTTCTCCTTCTCCATGATAGTGTGTAGTTT  700

seq1  TGGAGGCCACTAATAGAGGCTTCTGGCCCCAAGCCCAGGAAAATAAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCACTAATAGAGGCTTCTGGCCCCAAGCCCAGGAAAATAAGCTT  750

seq1  TGATTCCTGATTCATTCCCATCTAATTAAGCATTTAGGGCTTGTCCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCTGATTCATTCCCATCTAATTAAGCATTTAGGGCTTGTCCTTGA  800

seq1  CGGTTTATTGTGTTGGCACTAAAGCAAATGCAGAATGCATAAAAACAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTATTGTGTTGGCACTAAAGCAAATGCAGAATGCATAAAAACAAGC  850

seq1  CAACATGTTTAGTTTGTTTAGCTGTGGTACTGTTAGTAGGTCTTAGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTTTAGTTTGTTTAGCTGTGGTACTGTTAGTAGGTCTTAGTAAA  900

seq1  TACCTGCTGGGTTGCATTGTCTTCATGAGCTGGTGGTTTTTTTCTTTTAT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TACCTGCTGGGTTGCATTGTCTTCATGAGCTGGT-GTTTTTTTCTTTTAT  949

seq1  ATTTTATTTAATATGTTTTTCTCTGT-GTGTGTGTGTGTGTGTCTCTGTG  999
      ||||||||| ||||| |||||||| | ||||||||||||||||||||| |
seq2  ATTTTATTT-ATATG-TTTTCTCTATGGTGTGTGTGTGTGTGTCTCTG-G  996

seq1  TGTGTGTCTGTGTGCGTCTGCGGGTGCTATA-TCCCTCATGTGGAAATAA  1048
      || ||| ||| | |||||||||||||||||| ||||||||||| |||| |
seq2  TGAGTGCCTG-GAGCGTCTGCGGGTGCTATATTCCCTCATGTGTAAAT-A  1044

seq1  AAGCATAACATGC  1061
      |||||| ||||||
seq2  AAGCAT-ACATGC  1056