BAC Information

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BAC

Clone NameB6Ng01-267B19
Chromosome7 (Build37)
Map Location 24,787,674 - 24,788,784
singlet/doubletsinglet
Overlap geneV1rd18
Upstream geneLOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20
Downstream geneV1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267B19.bB6Ng01-267B19.g
ACCGA070330GA070331
length9931,106
definitionB6Ng01-267B19.b B6Ng01-267B19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaagcagagaaaagcaagcaatagcaatagcagcttagacacaa
agacagaagtagggggaaaaaatggagaccagcagagctggagtgtgagg
ccctagggagatggggtaccagtcaggcacagtggaccaagcccattacc
ctagtggttgggacactgaggcaggagaatcacaaaattccaggcaagcc
taggctacatagctacaccttgccacaaaacattgaaaagcaacttgatt
ttactgagggaaaatggaagccaacagtctgaggtagggaagagtacaca
ggaaatcttcatttgggggttggaggggaagcaccctcagaagggcagaa
gaagggctgggcatccgctggctatacttacctgtttgagtcaaggacac
atgaaagaggctgtggaaattccctgcagctaatgaaagcctcagaggcc
aggcgtgtgggcggactatccctgtactgtgtgaagcttgggaggtgaag
cctggattgccttggagaccacaagaggtcagaggtgccagagctgtggg
atacctgctgaggaaagctgctaacagggagtggaaccagcctaagggaa
agaagtgtgttgcagtcagtggagctgaagacccgaagagtgctttgaca
tcagacagagatgcagagtttggggtttgctctcctggtttccgttcttg
ctttggttcagtctttgctcgccgggctgcctttcctcccttctagaaaa
gaatattccgtgccatcgtatgttggattatgtggtctgccttttgattt
tgattttatagaaggatatactcgagagatttcatgaatctcaaaagaga
gtttgaactctggactttgaaacacggttgagactgatgatcgactctgg
ggacttatgtggttggactgaacgcatcttgcattctgctatggcttcaa
ggctttgggaggttcgggtagtcgcattgggtgggtcgtgtat
gaattcagatgaaatatttatgcttcattaagtgattttattgataaagt
tacatgatatttgaagcctatccaccctcctaattgtattgaattctgat
tttggaatcacatacttatactagcctctttcctctctttatttatatgc
aaaccatatggtgtgttaaaacgggtgtcattttgtaggtaattgaacta
gatgaacataaagatatagttgccatgcaaatatatctcgaggcaggagt
tatttatgagtatataattttattctgagttactgtccatgtattgttct
ccaggcaaagttcctgtagtgtgaaagaatagtgtctccctgatcaagag
aagaaaatatccaaagataagtgataagtatgggcaatagaagagaatcc
tgaagacagcagtgtcctacctaatcatcagtctagggtcagaaaaagcc
ctctccatgtctactcacgatacatccctgaaaaccactgaggaagtggc
ttttcagatcatcttgctttgccagtttggggttgggacttttgccaatg
tatttctctttgtctataatttctctccaatctcgactggttctaaacag
aggcccagacaagtgattttaagacacatggctgtggccaatgccttaac
tctcttcctcactatatttccaaacaacatgatgacttttgctccaatta
ttcctcaaactgacctcaaatgtaaattagaattcttcactcgccctcgt
ggcaagaagcacaaacttgtgttcaacttgtgttctgagtatccatcagt
ttgtcacacttgttcctgttaattcaggtaaaggaatactcagagcaagt
gtcacaaacatggcaagttattcttgtacagttgttggttccttcagtgt
cttaaataacatctacattccaataaggtcactggtccacagttaacaga
cataacaatactctaaagcagttgttctgttccacttctgatttcaagtg
tagcattgtctcttgaagttggccgatgaatgccacatcatgagcatcat
ggactggacagtgtcttcaatggtacgtctcatcatagaacattgtacga
gaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24787674_24788784
seq2: B6Ng01-267B19.g_67_1172

seq1  GAATTCAGATGAAATATTTATGCTTCATTAAGTGATTTTATTGATAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGAAATATTTATGCTTCATTAAGTGATTTTATTGATAAAGT  50

seq1  TACATGATATTTGAAGCCTATCCACCCTCCTAATTGTATTGAATTCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGATATTTGAAGCCTATCCACCCTCCTAATTGTATTGAATTCTGAT  100

seq1  TTTGGAATCACATACTTATACTAGCCTCTTTCCTCTCTTTATTTATATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATCACATACTTATACTAGCCTCTTTCCTCTCTTTATTTATATGC  150

seq1  AAACCATATGGTGTGTTAAAACGGGTGTCATTTTGTAGGTAATTGAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATATGGTGTGTTAAAACGGGTGTCATTTTGTAGGTAATTGAACTA  200

seq1  GATGAACATAAAGATATAGTTGCCATGCAAATATATCTCGAGGCAGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACATAAAGATATAGTTGCCATGCAAATATATCTCGAGGCAGGAGT  250

seq1  TATTTATGAGTATATAATTTTATTCTGAGTTACTGTCCATGTATTGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGAGTATATAATTTTATTCTGAGTTACTGTCCATGTATTGTTCT  300

seq1  CCAGGCAAAGTTCCTGTAGTGTGAAAGAATAGTGTCTCCCTGATCAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAAAGTTCCTGTAGTGTGAAAGAATAGTGTCTCCCTGATCAAGAG  350

seq1  AAGAAAATATCCAAAGATAAGTGATAAGTATGGGCAATAGAAGAGAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATATCCAAAGATAAGTGATAAGTATGGGCAATAGAAGAGAATCC  400

seq1  TGAAGACAGCAGTGTCCTACCTAATCATCAGTCTAGGGTCAGAAAAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGCAGTGTCCTACCTAATCATCAGTCTAGGGTCAGAAAAAGCC  450

seq1  CTCTCCATGTCTACTCACGATACATCCCTGAAAACCACTGAGGAAGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATGTCTACTCACGATACATCCCTGAAAACCACTGAGGAAGTGGC  500

seq1  TTTTCAGATCATCTTGCTTTGCCAGTTTGGGGTTGGGACTTTTGCCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGATCATCTTGCTTTGCCAGTTTGGGGTTGGGACTTTTGCCAATG  550

seq1  TATTTCTCTTTGTCTATAATTTCTCTCCAATCTCGACTGGTTCTAAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCTTTGTCTATAATTTCTCTCCAATCTCGACTGGTTCTAAACAG  600

seq1  AGGCCCAGACAAGTGATTTTAAGACACATGGCTGTGGCCAATGCCTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGACAAGTGATTTTAAGACACATGGCTGTGGCCAATGCCTTAAC  650

seq1  TCTCTTCCTCACTATATTTCCAAACAACATGATGACTTTTGCTCCAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTCACTATATTTCCAAACAACATGATGACTTTTGCTCCAATTA  700

seq1  TTCCTCAAACTGACCTCAAATGTAAATTAGAATTCTTCACTCG-CCTCGT  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCCTCAAACTGACCTCAAATGTAAATTAGAATTCTTCACTCGCCCTCGT  750

seq1  GGCAAGAAGCACAAACTTGTGTTCAACTTGTGTTCTGAGTATCCATCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAAGCACAAACTTGTGTTCAACTTGTGTTCTGAGTATCCATCAGT  800

seq1  TTGTCACACTTGTTCCTGTTAATTCAGGTAAAGGAATACTCAGAGCAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACACTTGTTCCTGTTAATTCAGGTAAAGGAATACTCAGAGCAAGT  850

seq1  GTCACAAACATGGCAAGTTATTCTTGTTACAGTTGTTGGTT-CTTCAGTG  898
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  GTCACAAACATGGCAAGTTATTCTTG-TACAGTTGTTGGTTCCTTCAGTG  899

seq1  TCTTAAATAACATCTACATTCCAATTAAGGTCACTGGTCCACAGTTAACA  948
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTTAAATAACATCTACATTCCAA-TAAGGTCACTGGTCCACAGTTAACA  948

seq1  GACAATAACAATAACTCTAAAAGCAAGTTGTTCTGTTCCACTTCTGATTT  998
      ||| |||||||| ||||| ||||| |||||||||||||||||||||||||
seq2  GAC-ATAACAAT-ACTCT-AAAGC-AGTTGTTCTGTTCCACTTCTGATTT  994

seq1  C-AGTGTAGGCATTGTCTTCTTGAGGTTTGCCCATG-ATGCCACATTCAT  1046
      | |||||| |||||||| |||||| ||| ||| ||| |||||||| ||||
seq2  CAAGTGTA-GCATTGTC-TCTTGAAGTTGGCCGATGAATGCCACA-TCAT  1041

seq1  GAGCATCATGGTCTGGACCAGTGTC-TCCATGGTACTTCTCCTCCATAG-  1094
      ||||||||||| ||||| ||||||| || ||||||| |||| | ||||| 
seq2  GAGCATCATGGACTGGA-CAGTGTCTTCAATGGTACGTCTCAT-CATAGA  1089

seq1  ACATTGTCAGAGAATGC  1111
      |||||||  ||||||||
seq2  ACATTGTACGAGAATGC  1106