BAC Information

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BAC

Clone NameB6Ng01-269E15
Chromosome7 (Build37)
Map Location 12,890,338 - 12,953,519
singlet/doubletdoublet
Overlap geneV1rg12, V1rg8, V1rg11
Upstream geneZscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9
Downstream geneZfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269E15.bB6Ng01-269E15.g
ACCGA071927GA071928
length1,1821,088
definitionB6Ng01-269E15.b B6Ng01-269E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,952,349 - 12,953,519)(12,890,338 - 12,891,426)
sequence
gaattctttcagttagttttgtaaaatttgagacaataaatatccttctg
catcagtttaggtgatggcagggaaaacacagttgctattctcctcagca
cctcactgtgagaatagtgaaggggagtcttgaatgaaatctgaaggaga
aagcttacaattgacaggtatggttttgataatttttgatgtattctgaa
actcaggagacttttaggacatgagcatgggatttgagtaaaaaagtgag
gagagtcctgtcaattccagagcctaagaaacaatatcatggactggaca
gggtcaggctcaaatgaggaactctgcaaatggagcaggcccacaaggag
ttctgggaactgctgtttcagagtgcttccatctgtctgttcatccacta
tgattatagacaaagcttgtcaaactcccttggtatccaggctgagacag
ttttctgctcttgcaaaatgaatttatggaaaattctccattgaagtatg
tcagagagatgactagaatttgctttctggtttcgacattttattagttt
tcctttctgtagatgaagaaatttcatactgagccatccatataccaatg
acctgttttgtttctagatgttccattatatttttatatcttccctttac
cattttagaatgaatcattattcattattcatggatggaatgcctgaacc
caatatagtatttatcacataatctgactcacaggagctgtcgtgtttga
atacagtatctattatcttatctgaaattccagaattgctcagtagcctg
acagattgtaccctgtgaaccaatctattttgtcttactccattctttgt
ctaattctatgcaggtatgctgtgttaagtctctcttgttctatacattg
tatttgattgctctctctctctctaccttgtaacagctcttaactataga
agcttttccaactgccatgtaacttagtatatgagtaaaagatgcccaat
aagaaccacatgagtgtctttctgatactatcactatcaggaacaccttt
catacacctaagcttctttctttatgccacatattatttccaggacacat
tgaattaggatatgccactgaagagcttagacttggttcaaaatttctac
gagccttatgaagactggaatgaacccaggtc
gaattccacagataatggcagaatttgggatgaaatattttctggatgac
attgggtgtaaacttgtactttacctttatagagtatcccggggggtttc
actatatacaacatgccttttgagttgtttccaagcggccataatcagct
caagcaccaccaaatggatgaagtttaaacacaaagccatcaagtacatg
ggtccttcctgctcactcagttggcctatgaatctgcttctgaatgtcat
gatacttgtgacagtgacaagctctagcaacagaaggaatgccactaaga
aactgacctatgggtactgctcagcatctgtttctggcactattgcaact
cccttgtatatgctcttgctcagcttcactgatgttctgtgtttgagtct
catgtcctgggccagtgtcttcatgctgagcatcctccacaggcacaaga
agcaggtccagtacatccatggtgtccaacatttcctgagagtctctcct
gaggccagggccacccaaaccatactaatccttgcatgcacttttgttac
cttctactctatctcttccatcatggttctatattcagccttatttggta
atccaggattgtgggttatcaacatcatctcagttttagaaacctgttac
cctatattttgctcctttgtgctcattagtaataacagctctgcctctag
gctctatcttcactgttggtggaaacgttaatagactatgaacttgtttc
atgttcagagggttctcagatccattcttttgttcctctaaccaccattt
aagttaaggacagtgtcggtaactctctggttttgtgtgtcaacttgaca
caagttagagtcattagagtataaggagcctcagttgaggaaatgcttcc
atgagatccagctacaagacattttctcaattagtgaacagttgagtatg
ggcccagcctattgtgagtggtgacatcccttgggcctgatgggtcctga
gttatacagaaggaagtcaaaaagaaggccagaggagcaagagagtatca
caccactcatggctatgcatcagctcctgcttccaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12952349_12953519
seq2: B6Ng01-269E15.b_44_1225 (reverse)

seq1  GACCTGGGTTCCTTTCAATCTTTCATAAGGGCTTCTGAGAAATTTTGGAC  50
      ||||||||||| || || || |||||||||   ||  |||||||||| ||
seq2  GACCTGGGTTCATTCCAGTC-TTCATAAGG--CTCGTAGAAATTTTGAAC  47

seq1  C-AGTCT-AGCTC-TCAGT-GCATATCCTAAT--CATGTGTCTTG--AAT  92
      | ||||| ||||| ||||| ||||||||||||   ||||||| ||  |||
seq2  CAAGTCTAAGCTCTTCAGTGGCATATCCTAATTCAATGTGTCCTGGAAAT  97

seq1  -ATATGT-GCATTAAGAA--GAGCTTA-GTGTATG-AAGGTGTTCCTGAT  136
       |||||| |||| |||||   |||||| ||||||| ||||||||||||||
seq2  AATATGTGGCATAAAGAAAGAAGCTTAGGTGTATGAAAGGTGTTCCTGAT  147

seq1  AGTGATAGTATCAG-AAGACACTCATGTGGTTCTTTATTGGCATTCTTTT  185
      |||||||||||||| |||||||||||||||||| |||||||   ||||||
seq2  AGTGATAGTATCAGAAAGACACTCATGTGGTTC-TTATTGGGCATCTTTT  196

seq1  ACTCATATACTAAGTTACATGGCAGTTGGAAAAGCTTCTATAGTTAAGAG  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATATACTAAGTTACATGGCAGTTGGAAAAGCTTCTATAGTTAAGAG  246

seq1  CTGTTACAAGGTAGAGAGAGAGAGAGCAATCAAATACAATGTATAGAACA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACAAGGTAGAGAGAGAGAGAGCAATCAAATACAATGTATAGAACA  296

seq1  AGAGAGACTTAACACAGCATACCTGCATAGAATTAGACAAAGAATGGAGT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACTTAACACAGCATACCTGCATAGAATTAGACAAAGAATGGAGT  346

seq1  AAGACAAAATAGATTGGTTCACAGGGTACAATCTGTCAGGCTACTGAGCA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAATAGATTGGTTCACAGGGTACAATCTGTCAGGCTACTGAGCA  396

seq1  ATTCTGGAATTTCAGATAAGATAATAGATACTGTATTCAAACACGACAGC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGAATTTCAGATAAGATAATAGATACTGTATTCAAACACGACAGC  446

seq1  TCCTGTGAGTCAGATTATGTGATAAATACTATATTGGGTTCAGGCATTCC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGAGTCAGATTATGTGATAAATACTATATTGGGTTCAGGCATTCC  496

seq1  ATCCATGAATAATGAATAATGATTCATTCTAAAATGGTAAAGGGAAGATA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGAATAATGAATAATGATTCATTCTAAAATGGTAAAGGGAAGATA  546

seq1  TAAAAATATAATGGAACATCTAGAAACAAAACAGGTCATTGGTATATGGA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATAATGGAACATCTAGAAACAAAACAGGTCATTGGTATATGGA  596

seq1  TGGCTCAGTATGAAATTTCTTCATCTACAGAAAGGAAAACTAATAAAATG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGTATGAAATTTCTTCATCTACAGAAAGGAAAACTAATAAAATG  646

seq1  TCGAAACCAGAAAGCAAATTCTAGTCATCTCTCTGACATACTTCAATGGA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAACCAGAAAGCAAATTCTAGTCATCTCTCTGACATACTTCAATGGA  696

seq1  GAATTTTCCATAAATTCATTTTGCAAGAGCAGAAAACTGTCTCAGCCTGG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCCATAAATTCATTTTGCAAGAGCAGAAAACTGTCTCAGCCTGG  746

seq1  ATACCAAGGGAGTTTGACAAGCTTTGTCTATAATCATAGTGGATGAACAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGGGAGTTTGACAAGCTTTGTCTATAATCATAGTGGATGAACAG  796

seq1  ACAGATGGAAGCACTCTGAAACAGCAGTTCCCAGAACTCCTTGTGGGCCT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGAAGCACTCTGAAACAGCAGTTCCCAGAACTCCTTGTGGGCCT  846

seq1  GCTCCATTTGCAGAGTTCCTCATTTGAGCCTGACCCTGTCCAGTCCATGA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATTTGCAGAGTTCCTCATTTGAGCCTGACCCTGTCCAGTCCATGA  896

seq1  TATTGTTTCTTAGGCTCTGGAATTGACAGGACTCTCCTCACTTTTTTACT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTCTTAGGCTCTGGAATTGACAGGACTCTCCTCACTTTTTTACT  946

seq1  CAAATCCCATGCTCATGTCCTAAAAGTCTCCTGAGTTTCAGAATACATCA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCATGCTCATGTCCTAAAAGTCTCCTGAGTTTCAGAATACATCA  996

seq1  AAAATTATCAAAACCATACCTGTCAATTGTAAGCTTTCTCCTTCAGATTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATCAAAACCATACCTGTCAATTGTAAGCTTTCTCCTTCAGATTT  1046

seq1  CATTCAAGACTCCCCTTCACTATTCTCACAGTGAGGTGCTGAGGAGAATA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGACTCCCCTTCACTATTCTCACAGTGAGGTGCTGAGGAGAATA  1096

seq1  GCAACTGTGTTTTCCCTGCCATCACCTAAACTGATGCAGAAGGATATTTA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGTGTTTTCCCTGCCATCACCTAAACTGATGCAGAAGGATATTTA  1146

seq1  TTGTCTCAAATTTTACAAAACTAACTGAAAGAATTC  1171
      ||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAAATTTTACAAAACTAACTGAAAGAATTC  1182

seq1: chr7_12890338_12891426
seq2: B6Ng01-269E15.g_63_1150

seq1  GAATTCCACAGATAATGGCAGAATTTGGGATGAAATATTTTCTGGATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGATAATGGCAGAATTTGGGATGAAATATTTTCTGGATGAC  50

seq1  ATTGGGTGTAAACTTGTACTTTACCTTTATAGAGTATCCCGGGGGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTGTAAACTTGTACTTTACCTTTATAGAGTATCCCGGGGGGTTTC  100

seq1  ACTATATACAACATGCCTTTTGAGTTGTTTCCAAGCGGCCATAATCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATACAACATGCCTTTTGAGTTGTTTCCAAGCGGCCATAATCAGCT  150

seq1  CAAGCACCACCAAATGGATGAAGTTTAAACACAAAGCCATCAAGTACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCACCAAATGGATGAAGTTTAAACACAAAGCCATCAAGTACATG  200

seq1  GGTCCTTCCTGCTCACTCAGTTGGCCTATGAATCTGCTTCTGAATGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCCTGCTCACTCAGTTGGCCTATGAATCTGCTTCTGAATGTCAT  250

seq1  GATACTTGTGACAGTGACAAGCTCTAGCAACAGAAGGAATGCCACTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTGTGACAGTGACAAGCTCTAGCAACAGAAGGAATGCCACTAAGA  300

seq1  AACTGACCTATGGGTACTGCTCAGCATCTGTTTCTGGCACTATTGCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACCTATGGGTACTGCTCAGCATCTGTTTCTGGCACTATTGCAACT  350

seq1  CCCTTGTATATGCTCTTGCTCAGCTTCACTGATGTTCTGTGTTTGAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTATATGCTCTTGCTCAGCTTCACTGATGTTCTGTGTTTGAGTCT  400

seq1  CATGTCCTGGGCCAGTGTCTTCATGCTGAGCATCCTCCACAGGCACAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTGGGCCAGTGTCTTCATGCTGAGCATCCTCCACAGGCACAAGA  450

seq1  AGCAGGTCCAGTACATCCATGGTGTCCAACATTTCCTGAGAGTCTCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTCCAGTACATCCATGGTGTCCAACATTTCCTGAGAGTCTCTCCT  500

seq1  GAGGCCAGGGCCACCCAAACCATACTAATCCTTGCATGCACTTTTGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGGGCCACCCAAACCATACTAATCCTTGCATGCACTTTTGTTAC  550

seq1  CTTCTACTCTATCTCTTCCATCATGGTTCTATATTCAGCCTTATTTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACTCTATCTCTTCCATCATGGTTCTATATTCAGCCTTATTTGGTA  600

seq1  ATCCAGGATTGTGGGTTATCAACATCATCTCAGTTTTAGAAACCTGTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGATTGTGGGTTATCAACATCATCTCAGTTTTAGAAACCTGTTAC  650

seq1  CCTATATTTTGCTCCTTTGTGCTCATTAGTAATAACAGCTCTGCCTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATTTTGCTCCTTTGTGCTCATTAGTAATAACAGCTCTGCCTCTAG  700

seq1  GCTCTATCTTCACTGTTGGTGGAAACGTTAATAGACTATGAACTTGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATCTTCACTGTTGGTGGAAACGTTAATAGACTATGAACTTGTTTC  750

seq1  ATGTTCAGAGGGTTCTCAGATCCATTCTTTTGTTCCTCTAACCACCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGAGGGTTCTCAGATCCATTCTTTTGTTCCTCTAACCACCATTT  800

seq1  AAGTTAAGGACAGTGTCGGTAACTCTCTGGTTTTGTGTGTCAACTTGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGGACAGTGTCGGTAACTCTCTGGTTTTGTGTGTCAACTTGACA  850

seq1  CAAGTTAGAGTCATTAGAGTATAAGGAGCCTCAGTTGAGGAAATGCTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAGAGTCATTAGAGTATAAGGAGCCTCAGTTGAGGAAATGCTTCC  900

seq1  ATGAGATCCAGCTACAAGACATTTTCTCAATTAGTGAACAGTTGAGTAT-  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGAGATCCAGCTACAAGACATTTTCTCAATTAGTGAACAGTTGAGTATG  950

seq1  GGCCCAGCCTATTGTGAGTGGTGACATCCCT--GGGCTGAT-GGTCCTGA  996
      |||||||||||||||||||||||||||||||  || ||||| ||||||||
seq2  GGCCCAGCCTATTGTGAGTGGTGACATCCCTTGGGCCTGATGGGTCCTGA  1000

seq1  GTTATACAAGAAGGAAGGTCAAAAGAAGCCAAGAGGAGCAAGAGAGTAAT  1046
      ||||||| |||||||||   |||||||| | |||||||||||||||| ||
seq2  GTTATAC-AGAAGGAAGTCAAAAAGAAGGCCAGAGGAGCAAGAGAGT-AT  1048

seq1  CAACACCACTCCATGGCTATTGCATCAGCTCCTGCTTCCAGGT  1089
      | |||||||| |||||||| |||||||||||||||||||||||
seq2  C-ACACCACT-CATGGCTA-TGCATCAGCTCCTGCTTCCAGGT  1088