BAC Information

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BAC

Clone NameB6Ng01-270C02
Chromosome7 (Build37)
Map Location 100,434,840 - 100,435,968
singlet/doubletsinglet
Overlap genenone
Upstream geneDlg2, Ccdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298
Downstream geneLOC666783, EG638305, EG545982
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270C02.bB6Ng01-270C02.g
ACCGA072552GA072553
length1,1161,178
definitionB6Ng01-270C02.b B6Ng01-270C02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtggggatttatgaagcattcagcaaacttttgagaaatgaa
ttagtttaaaataaagtttaataattaatattgaagaatgaaatcagggt
agcttaaatttgactctgcattctctcaacagctttatgttgctgtttgt
tgttgttaaaaactagtcttctaaattttttaaatgctacatatatttat
ttatttatttattcaaggtatttgtgtttgtgtttaagcatatgaatatg
cacatgtgtgcaaatgcccataaaagtcaaggtggcatcagatcccctga
aactagacttacaggtagttaaaggcatcatgcgagtgctaaaaaccaaa
ttaggttttctacaaaagcatcaagtgctcttaagctctctctctgttct
gtgattattattttagtcacctataaacaattttctataggaaaaataac
tttctactacttttaatcttaaagaagtcatacttcatgtgaattaatat
attagcattattatgtttatatcaatcatatatggatgttactaatggaa
gttattcctcatggggctgataaccttcaagtacattaacaaaacacatt
aaggtccactgataataagtaagaacagactattaaatctaggttaaagt
agccagtcaacttctatctttatggaattgttctttagttaaaatttaaa
ttgtgaagctacatccattgagacttaaatttggtagttgtacaacaatg
gcctgacatagattatgagttacaaactctacaaaactgctactcttagc
ctaaataagtgaattcagttagagaaaatgatttggtttcttcataagta
tcataagtcatgatttctacctgtttgcattgtctgttgaagcataagtc
agcaggggttcagtgggtagagttattgcaacaaagactatggaaagcct
tagttcattcctgtactgaaaagaaataagaaagaaagaaataaaatcca
tcaagtgcagccacacccattagtaccataaacagctcttcttgatgctc
acatgctgcagactgcatgcagtggctttcatttctataacttgttcttt
cattttttcatttagt

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcatggaaatgcaaatcaaaagtaccctgagat
tccacctcacaccagtcacaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatttggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacaccatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
tgacccagatgtagctgtctcttgtgagactatgcccgggccttacaaac
acagaagtggatgctcacagtcagctaatggatggatcacagagctccca
atggaggagctagagaaagtagccaagagctaaagggatctgcaacccta
tagtggacacattatgactaccagtaccccggagctctgactctagctgc
atatgtatcaaaggatgactagtcgccatcactggcaagagagtcatgac
acacaaactttaattgcccagtacaggcatgcaagggtcaaaggatggcg
tgtttatgaggagaatagtgtggtgcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_100434840_100435968
seq2: B6Ng01-270C02.b_47_1162 (reverse)

seq1  ACTAAATGAAAAAATTGAAAGAACAAGTTTATAGAAATGGAAGCCACTGC  50
      |||||||||||||| |||||||||||| ||||||||||| ||||||||||
seq2  ACTAAATGAAAAAA-TGAAAGAACAAG-TTATAGAAATGAAAGCCACTGC  48

seq1  ATTGCAGTCTGCAGCATGGTGAGCATCAAG-AGAGCTTGTTTATTGGGTA  99
      | ||||||||||||||| |||||||||||| ||||| |||||||  ||||
seq2  A-TGCAGTCTGCAGCAT-GTGAGCATCAAGAAGAGC-TGTTTAT--GGTA  93

seq1  CCTAATGGGTGTGGCTGCACTTTGATGGATTTTTATTTTCTTTTCTTTCT  149
       ||||||||||||||||||| |||||||| ||||||||   |||||||| 
seq2  -CTAATGGGTGTGGCTGCAC-TTGATGGA-TTTTATTT--CTTTCTTTC-  137

seq1  TTATTTCTTTTCAGTACAGGAATTGAACCTAAGGCTTTCCATAGTCTTTG  199
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  TTATTTCTTTTCAGTACAGGAA-TGAA-CTAAGGCTTTCCATAGTCTTTG  185

seq1  TTGCAATAACTCTA-CCACTGAACCCCTGCTGACTTATGCTTCAACAGAC  248
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGCAATAACTCTACCCACTGAACCCCTGCTGACTTATGCTTCAACAGAC  235

seq1  AATGCAAACAGGTAGAAATCATGACTTATGATACTTATGAAGAAACCAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAACAGGTAGAAATCATGACTTATGATACTTATGAAGAAACCAAA  285

seq1  TCATTTTCTCTAACTGAATTCACTTATTTAGGCTAAGAGTAGCAGTTTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTCTAACTGAATTCACTTATTTAGGCTAAGAGTAGCAGTTTTG  335

seq1  TAGAGTTTGTAACTCATAATCTATGTCAGGCCATTGTTGTACAACTACCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTGTAACTCATAATCTATGTCAGGCCATTGTTGTACAACTACCA  385

seq1  AATTTAAGTCTCAATGGATGTAGCTTCACAATTTAAATTTTAACTAAAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGTCTCAATGGATGTAGCTTCACAATTTAAATTTTAACTAAAGA  435

seq1  ACAATTCCATAAAGATAGAAGTTGACTGGCTACTTTAACCTAGATTTAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCATAAAGATAGAAGTTGACTGGCTACTTTAACCTAGATTTAAT  485

seq1  AGTCTGTTCTTACTTATTATCAGTGGACCTTAATGTGTTTTGTTAATGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTCTTACTTATTATCAGTGGACCTTAATGTGTTTTGTTAATGTA  535

seq1  CTTGAAGGTTATCAGCCCCATGAGGAATAACTTCCATTAGTAACATCCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGTTATCAGCCCCATGAGGAATAACTTCCATTAGTAACATCCAT  585

seq1  ATATGATTGATATAAACATAATAATGCTAATATATTAATTCACATGAAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTGATATAAACATAATAATGCTAATATATTAATTCACATGAAGT  635

seq1  ATGACTTCTTTAAGATTAAAAGTAGTAGAAAGTTATTTTTCCTATAGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCTTTAAGATTAAAAGTAGTAGAAAGTTATTTTTCCTATAGAAA  685

seq1  ATTGTTTATAGGTGACTAAAATAATAATCACAGAACAGAGAGAGAGCTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTATAGGTGACTAAAATAATAATCACAGAACAGAGAGAGAGCTTA  735

seq1  AGAGCACTTGATGCTTTTGTAGAAAACCTAATTTGGTTTTTAGCACTCGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTTGATGCTTTTGTAGAAAACCTAATTTGGTTTTTAGCACTCGC  785

seq1  ATGATGCCTTTAACTACCTGTAAGTCTAGTTTCAGGGGATCTGATGCCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCCTTTAACTACCTGTAAGTCTAGTTTCAGGGGATCTGATGCCAC  835

seq1  CTTGACTTTTATGGGCATTTGCACACATGTGCATATTCATATGCTTAAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTTTATGGGCATTTGCACACATGTGCATATTCATATGCTTAAAC  885

seq1  ACAAACACAAATACCTTGAATAAATAAATAAATAAATATATGTAGCATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACAAATACCTTGAATAAATAAATAAATAAATATATGTAGCATTT  935

seq1  AAAAAATTTAGAAGACTAGTTTTTAACAACAACAAACAGCAACATAAAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTTAGAAGACTAGTTTTTAACAACAACAAACAGCAACATAAAGC  985

seq1  TGTTGAGAGAATGCAGAGTCAAATTTAAGCTACCCTGATTTCATTCTTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGAGAATGCAGAGTCAAATTTAAGCTACCCTGATTTCATTCTTCA  1035

seq1  ATATTAATTATTAAACTTTATTTTAAACTAATTCATTTCTCAAAAGTTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATTATTAAACTTTATTTTAAACTAATTCATTTCTCAAAAGTTTG  1085

seq1  CTGAATGCTTCATAAATCCCCACTGGAATTC  1129
      |||||||||||||||||||||||||||||||
seq2  CTGAATGCTTCATAAATCCCCACTGGAATTC  1116


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