BAC Information

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BAC

Clone NameB6Ng01-273D20
Chromosome7 (Build37)
Map Location 49,897,875 - 49,898,969
singlet/doubletsinglet
Overlap geneC330019L16Rik
Upstream gene2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776
Downstream geneEG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273D20.bB6Ng01-273D20.g
ACCGA074863GA074864
length1,0861,066
definitionB6Ng01-273D20.b B6Ng01-273D20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccctcacagcacccagcagtagcacacagagcaggacacacaaa
ccacaccacactcctcagatatagtttggaaccggcagcatagcaccggg
aagcacccgcctccacttctgactggcaggtcagactggaggccgtgatt
ggccagcgagtcttgaatgacataagcaactcccttaaggttagtgtgtg
atgaagggactcagtttaatgattcctggcccacgttgctgttccagggc
cgaccgttttccagataatagggtgagagtgcactgatgggataaagcaa
aggggttgtgctaggaccccaggggcccaaatgttgagaacgcgacccct
agagacacagcttgacaatagatcgctgcaatggcaagacaggtttttat
tccaatgcgcacagggttgctcagcctcgcagggagagtaaatcccaact
gcttaaactacagttttttgttttttttaactactctttatttgtggggc
atggagggagggttacacaactttatcaatgttggccagcaaagtaacag
ttatgttttttacttttggtgtcagccagcgatgtcagaaactttgtcag
caaggtcggtttatcttagaattcaaactgaggccggggtcccagggacc
gtttttattgttatagcaaatttttgagaacagctagtcttgctatggca
gttgtggtcattttgaccattagacagtcccctcagatggggaagggggc
aggcagtcttgagcttctttacactggcagggaaaggcttgtttatatca
gcagggaaagggcaaggagcaggggaagggaaggcttctgcaaactgaga
attcctcaagcagcacgggggagggaaagtcttgcttctggcttccagca
ctccctttctccctcctgtaatcaaggcagatagcttgcagggcccatta
tttacttgcagtgtataaacaatccagtccataggggacgcacccagata
ttgacatttgaggagatttttagaaacactagattttgtcctgtgggttt
catgtcgggtcaggtaactggcagcctatgtttcac
gaattccatgccacgatctggatcagaaacttgtgtcctccagcctcaag
atctggatcacaagtgagcccccccccagttctgaattttagttcatttt
agatacagtcaagttgacaaccaggaatatccattgcactggctactctg
ccaccactcctacaactcctatctgccatcactcttcctatggataattg
ataaaaagctgaaaataagttttaaggttggcaggcatggtgccactctg
gttagcggtataattctgcaactccaatagctgcaacctgcagagataga
ggccatttgggggcaacacctttgtttcgttaagaaaagcagaggaaagc
gttgagaattgtggagatggactctggttataggagaatctcaatcctgg
tccaacattcttccattgggaagtcttggattcctattattttattgggt
tcattgtaagtgaacctagcaaatcatctccagtgggtagtgggagggtt
aggaagaggctgagcagaagcagagttagaatgaaggataacaaagacag
tgataagaaaagagaaaaggaaagcctgcagtgagacacatgtcccgggc
agctaccattaggttatggacatccttctggaagatcttcttgtttcatt
ggggatgccatctcttctgtgttggggattggctccaacactttgaatta
atccagcccccaaaattgggaatctgtgtgtccaaatgctgaaggtcctt
ttccctacttggttttttgatgactcagtaaagagccagcagccaatggc
tggcaggcgaactgaggtgggacctccagattttgcattggaataggaac
tggggatgaaggaagacagagatcaccatgactcctgggagaggatggga
taaaagagcttcagagagaaagtcaaccagccatgtaagaatttgggtaa
gttgcaactggtcactttcccagactggacctttggatagtaagggaagg
tttatgagtctagggcataccgtagaagagcacttgcttacacgggaggt
ttttagagcatcccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49897875_49898969
seq2: B6Ng01-273D20.b_42_1127

seq1  GAATTCCCCTCACAGCACCCAGCAGTAGCACACAGAGCAGGACACACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTCACAGCACCCAGCAGTAGCACACAGAGCAGGACACACAAA  50

seq1  CCACACCACACTCCTCAGATATAGTTTGGAACCGGCAGCATAGCACCGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCACACTCCTCAGATATAGTTTGGAACCGGCAGCATAGCACCGGG  100

seq1  AAGCACCCGCCTCCACTTCTGACTGGCAGGTCAGACTGGAGGCCGTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCGCCTCCACTTCTGACTGGCAGGTCAGACTGGAGGCCGTGATT  150

seq1  GGCCAGCGAGTCTTGAATGACATAAGCAACTCCCTTAAGGTTAGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCGAGTCTTGAATGACATAAGCAACTCCCTTAAGGTTAGTGTGTG  200

seq1  ATGAAGGGACTCAGTTTAATGATTCCTGGCCCACGTTGCTGTTCCAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGACTCAGTTTAATGATTCCTGGCCCACGTTGCTGTTCCAGGGC  250

seq1  CGACCGTTTTCCAGATAATAGGGTGAGAGTGCACTGATGGGATAAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCGTTTTCCAGATAATAGGGTGAGAGTGCACTGATGGGATAAAGCAA  300

seq1  AGGGGTTGTGCTAGGACCCCAGGGGCCCAAATGTTGAGAACGCGACCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGTGCTAGGACCCCAGGGGCCCAAATGTTGAGAACGCGACCCCT  350

seq1  AGAGACACAGCTTGACAATAGATCGCTGCAATGGCAAGACAGGTTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACAGCTTGACAATAGATCGCTGCAATGGCAAGACAGGTTTTTAT  400

seq1  TCCAATGCGCACAGGGTTGCTCAGCCTCGCAGGGAGAGTAAATCCCAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCGCACAGGGTTGCTCAGCCTCGCAGGGAGAGTAAATCCCAACT  450

seq1  GCTTAAACTACAGTTTTTTGTTTTTTTTAACTACTCTTTATTTGTGGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAACTACAGTTTTTTGTTTTTTTTAACTACTCTTTATTTGTGGGGC  500

seq1  ATGGAGGGAGGGTTACACAACTTTATCAATGTTGGCCAGCAAAGTAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGAGGGTTACACAACTTTATCAATGTTGGCCAGCAAAGTAACAG  550

seq1  TTATGTTTTTTACTTTTGGTGTCAGCCAGCGATGTCAGAAACTTTGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTTTACTTTTGGTGTCAGCCAGCGATGTCAGAAACTTTGTCAG  600

seq1  CAAGGTCGGTTTATCTTAGAATTCAAACTGAGGCCGGGGTCCCAGGGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCGGTTTATCTTAGAATTCAAACTGAGGCCGGGGTCCCAGGGACC  650

seq1  GTTTTTATTGTTATAGCAAATTTTTGAGAACAGCTAGTCTTGCTATGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATTGTTATAGCAAATTTTTGAGAACAGCTAGTCTTGCTATGGCA  700

seq1  GTTGTGGTCATTTTGACCATTAGACAGTCCCCTCAGATGGGGAAGGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTCATTTTGACCATTAGACAGTCCCCTCAGATGGGGAAGGGGGC  750

seq1  AGGCAGTCTTGAGCTTCTTTACACTGGCAGGGAAAGGCTTGTTTATATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTCTTGAGCTTCTTTACACTGGCAGGGAAAGGCTTGTTTATATCA  800

seq1  GCAGGGAAAGGGCAAGGAGCAGGGGGAAGGGAAAGGCTTCTGCAAACTGA  850
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  GCAGGGAAAGGGCAAGGAGCA-GGGGAAGGG-AAGGCTTCTGCAAACTGA  848

seq1  GAATTCCTCAAGCAGCAGGGGGGAGGGAAAGTCTTGCTTCTGGCTTCCAG  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAAGCAGCACGGGGGAGGGAAAGTCTTGCTTCTGGCTTCCAG  898

seq1  CACTCCCCTTCTCCCTCCTGTAATCAAGGCAGATAGCTTGCAGGGCCCAT  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTTTCTCCCTCCTGTAATCAAGGCAGATAGCTTGCAGGGCCCAT  948

seq1  TATTTAACTTGCAGTGTAATAAACAATCCAGTCCATAGGGGAAGGGCACC  1000
      ||||| ||||||||||| ||||||||||||||||||||||||   |||||
seq2  TATTT-ACTTGCAGTGT-ATAAACAATCCAGTCCATAGGGGA--CGCACC  994

seq1  CAGAATATTGACAATTGAGGAGATTTTTAGGAAACACTAAGATTTTTGTT  1050
      ||| ||||||||| ||||||||||||||| |||||||| ||| |||||| 
seq2  CAG-ATATTGACATTTGAGGAGATTTTTA-GAAACACT-AGA-TTTTGTC  1040

seq1  CTGT-GGTTTCATGGTCGGGTCAGGTAAACTGCAG-CTATGTTTCAC  1095
      |||| |||||||| ||||||||||||||   |||| |||||||||||
seq2  CTGTGGGTTTCAT-GTCGGGTCAGGTAACTGGCAGCCTATGTTTCAC  1086