BAC Information

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BAC

Clone NameB6Ng01-274A06
Chromosome7 (Build37)
Map Location 27,879,026 - 28,004,369
singlet/doubletdoublet
Overlap geneCyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc
Upstream geneCyp2b13, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199
Downstream geneAdck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274A06.bB6Ng01-274A06.g
ACCGA075432GA075433
length3521,122
definitionB6Ng01-274A06.b B6Ng01-274A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,004,018 - 28,004,369)(27,879,026 - 27,880,087)
sequence
acaaagatccacctgtctctgccctctgagtgctgggatcaaaggctgct
gcactatcatgcttggctaggccttgtctgtgggttgagtctcagctttg
gagtgggtgggtactgcttcacatcctacttacttatgggtgactccttg
ggattcagttccttccccacatattactgcccttgcaggattttttgttt
gtttgtttgtttttgtggggttttttttgtttgtttgttttttttttttc
ttgaaacagggtttctctgtgtagccctggctgtcctggaactcactctg
tagaccatgctgaccttgaactcataaatttgcctgcctctgcctcccaa
gt
gaattccccagtaaggggctggaggtgtggctcagtggtaaggaccctgc
ctagaatcccccaggggggagatggaggcataactcattagtagaggacc
tgtctagagtcttccagtgatgggcttgggcatggctcagtggttgacta
catgactggtgtactgaataattttataccaatttgacacaagctacagt
cactggagaggacagaacctcaattgagaaaatgcctcaatcagaccaga
caataggcaggtctcaaggacattatcttgattagtgatgatggggtaga
gcccaacccatagtgggtggtgcaatccttgggctggtagtcctaggttc
tataagaaagcagactgagcaaggcacagggagcaagccagtaagcagca
cccctccatgacctctgcatcagcatctacctccaggatcctggagttcc
tatttgagttcctgtcctgacttccttccatgctgaacagtaatgtggaa
gtgtaagccaaataaaccctttcctcctcaagttgctttggtcatggtgt
ctcacctcaatcccccagtgaggagcatgagagcctaagacactggcatg
tgtaaggccttggcctccattccagcatcacaagaaggaagaagaagagg
gggcagaagcagaacctagcacataaaaatatagccctaaattatgtaag
acaaaacatagaagttttaaaggattcacaaaatctactatcataagagg
agatttaaacattagtgactgatacttaaaacagatcaaaaggctctcac
tccttctcctgcttgccgtgtgggactgagtaactgctagatccttgggc
ttccattcacagctactactgaaccattgtggggaattggactacagact
tcttctaaaagtgggaacatcacttggccttgtatgtgccctggagtctt
attttccatacttcatggaacttaatacacttgtgactacttagaaaaga
atcttaagaaagtcaaagttcgttttcaggatgattgtgtcttttaaatg
tctaagtatcctagcaattggatggaccttgtagggcatcattcttagtg
aggctacacattccataggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_28004018_28004369
seq2: B6Ng01-274A06.b_50_401 (reverse)

seq1  ACTTGGGAGGCAGAGGCAGGCAAATTTCTGAGTTCAAGGTCAGCCTGGTC  50
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  ACTTGGGAGGCAGAGGCAGGCAAATTTATGAGTTCAAGGTCAGCATGGTC  50

seq1  TACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTTTC  100

seq1  AAGAAAAAAAAAAAACAAACAAACAAAAAAAACCCCACAAAAACAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAAAAAACAAACAAACAAAAAAAACCCCACAAAAACAAACAA  150

seq1  ACAAACAAAAAATCCTGCAAGGGCAGTAATATGTGGGGAAGGAACTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAAATCCTGCAAGGGCAGTAATATGTGGGGAAGGAACTGAAT  200

seq1  CCCAAGGAGTCACCCATAAGTAAGTAGGATGTGAAGCAGTACCCACCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGAGTCACCCATAAGTAAGTAGGATGTGAAGCAGTACCCACCCAC  250

seq1  TCCAAAGCTGAGACTCAACCCACAGACAAGGCCTAGCCAAGCATGATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGCTGAGACTCAACCCACAGACAAGGCCTAGCCAAGCATGATAGT  300

seq1  GCAGCAGCCTTTGATCCCAGCACTCAGAGGGCAGAGACAGGTGGATCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCCTTTGATCCCAGCACTCAGAGGGCAGAGACAGGTGGATCTTT  350

seq1  GT  352
      ||
seq2  GT  352

seq1: chr7_27879026_27880087
seq2: B6Ng01-274A06.g_128_1187

seq1  AGGGGGGAGATGGAGGCATAACTCATTAGTAGAGGACCTGTCTAGAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGAGATGGAGGCATAACTCATTAGTAGAGGACCTGTCTAGAGTCT  50

seq1  TCCAGTGATGGGCTTGGGCATGGCTCAGTGGTTGACTACATGACTGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGATGGGCTTGGGCATGGCTCAGTGGTTGACTACATGACTGGTGT  100

seq1  ACTGAATAATTTTATACCAATTTGACACAAGCTACAGTCACTGGAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATAATTTTATACCAATTTGACACAAGCTACAGTCACTGGAGAGGA  150

seq1  CAGAACCTCAATTGAGAAAATGCCTCAATCAGACCAGACAATAGGCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCTCAATTGAGAAAATGCCTCAATCAGACCAGACAATAGGCAGGT  200

seq1  CTCAAGGACATTATCTTGATTAGTGATGATGGGGTAGAGCCCAACCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGACATTATCTTGATTAGTGATGATGGGGTAGAGCCCAACCCATA  250

seq1  GTGGGTGGTGCAATCCTTGGGCTGGTAGTCCTAGGTTCTATAAGAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGTGCAATCCTTGGGCTGGTAGTCCTAGGTTCTATAAGAAAGCA  300

seq1  GACTGAGCAAGGCACAGGGAGCAAGCCAGTAAGCAGCACCCCTCCATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGCAAGGCACAGGGAGCAAGCCAGTAAGCAGCACCCCTCCATGAC  350

seq1  CTCTGCATCAGCATCTACCTCCAGGATCCTGGAGTTCCTATTTGAGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATCAGCATCTACCTCCAGGATCCTGGAGTTCCTATTTGAGTTCC  400

seq1  TGTCCTGACTTCCTTCCATGCTGAACAGTAATGTGGAAGTGTAAGCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGACTTCCTTCCATGCTGAACAGTAATGTGGAAGTGTAAGCCAAA  450

seq1  TAAACCCTTTCCTCCTCAAGTTGCTTTGGTCATGGTGTCTCACCTCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTTTCCTCCTCAAGTTGCTTTGGTCATGGTGTCTCACCTCAATC  500

seq1  CCCCAGTGAGGAGCATGAGAGCCTAAGACACTGGCATGTGTAAGGCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGAGGAGCATGAGAGCCTAAGACACTGGCATGTGTAAGGCCTTG  550

seq1  GCCTCCATTCCAGCATCACAAGAAGGAAGAAGAAGAGGGGGCAGAAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCATTCCAGCATCACAAGAAGGAAGAAGAAGAGGGGGCAGAAGCAG  600

seq1  AACCTAGCACATAAAAATATAGCCCTAAATTATGTAAGACAAAACATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGCACATAAAAATATAGCCCTAAATTATGTAAGACAAAACATAGA  650

seq1  AGTTTTAAAGGATTCACAAAATCTACTATCATAAGAGGAGATTTAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAAGGATTCACAAAATCTACTATCATAAGAGGAGATTTAAACAT  700

seq1  TAGTGACTGATACTTAAAACAGATCAAAAGGCTCTCACTCCTTCTCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTGATACTTAAAACAGATCAAAAGGCTCTCACTCCTTCTCCTGC  750

seq1  TTGCCGTGTGGGACTGAGTAACTGCTAGATCCTTGGGCTTCCATTCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGTGTGGGACTGAGTAACTGCTAGATCCTTGGGCTTCCATTCACAG  800

seq1  CTACTACTGAACCATTGTGGGGAATTGGACTACAGACTTCTTCTAAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTGAACCATTGTGGGGAATTGGACTACAGACTTCTTCTAAAAGT  850

seq1  GGGAACATCACTTGG-CTTGTATGTGCCCTGGAGTCT--ATTTCCATACT  897
      ||||||||||||||| |||||||||||||||||||||   ||||||||||
seq2  GGGAACATCACTTGGCCTTGTATGTGCCCTGGAGTCTTATTTTCCATACT  900

seq1  TCAT-GAACTTAATACAACTTGTGACTACTTAGAAAAGAATCTTAAGAAA  946
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCATGGAACTTAATAC-ACTTGTGACTACTTAGAAAAGAATCTTAAGAAA  949

seq1  GTCAAAGTTCG-TTTCAGGATGAATTTGTGTCTTTTAAAATGTCTAAGTT  995
      ||||||||||| |||||||||||  ||||||||||| |||||||||||| 
seq2  GTCAAAGTTCGTTTTCAGGATGA--TTGTGTCTTTT-AAATGTCTAAGT-  995

seq1  ATTCCTAGCCAAATGGATGGACC-TGGAGGGCATCATCCTTAGTGAGGTA  1044
        |||||| ||| |||||||||| || |||||||||| ||||||||||  
seq2  -ATCCTAG-CAATTGGATGGACCTTGTAGGGCATCATTCTTAGTGAGGCT  1043

seq1  ACACATTCACAAAGGAAC  1062
      |||||||| || ||||||
seq2  ACACATTC-CATAGGAAC  1060