BAC Information

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BAC

Clone NameB6Ng01-275M08
Chromosome7 (Build37)
Map Location 46,867,627 - 46,973,441
singlet/doubletdoublet
Overlap geneLOC100039050
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133
Downstream geneEG668540, 4930558N11Rik, EG628161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275M08.bB6Ng01-275M08.g
ACCGA076719GA076720
length1,1471,099
definitionB6Ng01-275M08.b B6Ng01-275M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,972,310 - 46,973,441)(46,867,627 - 46,868,733)
sequence
gaattctctttccttgtaacttagcatgaacatttaaaaagactgacaga
aagatgagcggtaacataccgaggcacattcaaaaattaaaagtacacaa
gataaagacaacttgaggcccagaacctgaacctaaaagccaagacacag
gtgaaagatactaggctatgttgctccttgggaaaggaaaatgtacgcta
ggatttaaagacattgctacacaaggcagttttaaggttggatgtaatat
ttaactctaagaattctcattttgtcccttgttcagcaaggctgagggac
ctgtgagtatcaaaaaataaaaaataaataaaaaacaaaaaacaaaaacg
gattaagcctcctacccagttggatttgcagacagtgggcttcaacgagg
ttcaaatgtgctcccagacaacccattaaagaacgttctgattaaagaga
gcatggaatttaaatggtgagatgggctgactctatgaagactctccttg
ggtctgacttttcagccagacccaagaaatccacccccaacctctctgtc
ttctatttcagggtgagaagagctgggcctctggctgtgaggtctaatta
cctatcctgctggggcttcctgctgcctgctgggcgcccaaatacccctt
ggttgtagcttactgcttcgaaacactgaaagtaaaagtctggaagatcc
tctcctctgcctgttcactcccaagtatttatcaaacccatttcctagga
ggaagcaagtgggagatgataccccctctcccagactctgcaaagcccat
aaagtcccctttcctgtgaacagagttcttcttagtctagagtctcatgt
tcgaggtaaagctctcctgaagtaaattcttacctctcactctgaaaacg
tggaaaccagggcaaattcagataagatgctggcctgtcgactgctgtct
gaactcacaactcatatcctcattctgcactcagaaaccgagagattttt
gatgggcaagtgacacttatgcttgcactagcttcttgtggcagccagga
gtgcccactgacacagtttccacagtttcacagttcgacgcctccactga
gcctcaatcagaggctctatacctccaagttgcctttctgggcagcc

gaattccttagatttactgtttcaccattaagaggtatttttctgccagg
tatgagagtgcaggcctgtaactccagctacttagtggtcaaggctggag
gatcacaagctcaagaccagcttgggctgcagactgattaaattcagtgc
tagtctaggcagtttcctaagaccttgtttcaaaacacgaagtgtaaaag
ggctggggaataaaagctcagtgctagattgctggcctgggacggccaag
accgggtacagttcaatccctagcaacatacatggaattgttttttaaaa
aatgttttatcccaaagagatctcaaaaacaatgattgaatatgcagaac
ttcagacaaatactgcttggaaaactgtttatacaagttattttacctgc
tttattttccctctttgaatttctactttattttggaacttagatttttg
tgtattcttttacaacttgctagaggatcaagagactttgtagccatgtg
acagacgttaatgccttcctagtttctttttagtatggccattttcctga
tatcattgtacttctcctttattttatatctaaaaaagtttagtttttag
tttgtgtaaacagtaaatacccgatgtgctttagtggttggtcggatggc
aggatcttgggaacactggatagctcaaaagactggatctatacagtgtg
gacccaggagaagaaaagagattagcaactcagacatagcctcagacatg
gggtaaaggacctaaggctgagaactgcacttaccttcttcccacactaa
gtatgccaactgccaggagaagattaggtggaacctggaagtgtgcggtg
gagggaggtgtgccacaaggatggaggccacagactcaagctgctcggct
gtggcagtggcagcagacatttgggaagggctcagtataccgtattcaga
ggggctgtatcgatcacagaccgtttgtgatgggtaacagatcctggaaa
acagaactaaagtaagcaaggggtgggctcttcagtcagagagtactgac
tttcaggcgctatgttctgcctctactcattctattgctcaatttagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_46972310_46973441
seq2: B6Ng01-275M08.b_44_1190 (reverse)

seq1  GGCTGCCCAGAA--GCACCTTGGAG---TAGAG-CTCTGA-TGAGCTTCA  43
      ||||||||||||  ||| |||||||   ||||| |||||| ||||  |||
seq2  GGCTGCCCAGAAAGGCAACTTGGAGGTATAGAGCCTCTGATTGAGGCTCA  50

seq1  GT-GAGGCGTCG-ACTGTGGAACTGTGG-AACTGTGTCAGTGGGCACT-C  89
      || ||||||||| |||||| |||||||| ||||||||||||||||||| |
seq2  GTGGAGGCGTCGAACTGTGAAACTGTGGAAACTGTGTCAGTGGGCACTCC  100

seq1  TGGCTGCCACA--GAGCTAGTGCAAGGCAT-AGTGTCACTTG-CCATCAA  135
      |||||||||||   ||||||||||| |||| ||||||||||| |||||||
seq2  TGGCTGCCACAAGAAGCTAGTGCAA-GCATAAGTGTCACTTGCCCATCAA  149

seq1  AATCTTCTCGGTTTCTGAGTGCAGAATGAGGATATGAGTTGTGAGTTCAG  185
      ||   |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTCGGTTTCTGAGTGCAGAATGAGGATATGAGTTGTGAGTTCAG  199

seq1  ACAGCAGTCGACA-GCCAGCATCTTATCTGAATTTGCCCTGGTTTCCACG  234
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTCGACAGGCCAGCATCTTATCTGAATTTGCCCTGGTTTCCACG  249

seq1  TTTTCAGAGTGAGAGGTAAGAATTTACTTCAGGAGAGCTTTACCTCGAAC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAGTGAGAGGTAAGAATTTACTTCAGGAGAGCTTTACCTCGAAC  299

seq1  ATGAGACTCTAGACTAAGAAGAACTCTGTTCACAGGAAAGGGGACTTTAT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACTCTAGACTAAGAAGAACTCTGTTCACAGGAAAGGGGACTTTAT  349

seq1  GGGCTTTGCAGAGTCTGGGAGAGGGGGTATCATCTCCCACTTGCTTCCTC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTGCAGAGTCTGGGAGAGGGGGTATCATCTCCCACTTGCTTCCTC  399

seq1  CTAGGAAATGGGTTTGATAAATACTTGGGAGTGAACAGGCAGAGGAGAGG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAATGGGTTTGATAAATACTTGGGAGTGAACAGGCAGAGGAGAGG  449

seq1  ATCTTCCAGACTTTTACTTTCAGTGTTTCGAAGCAGTAAGCTACAACCAA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCAGACTTTTACTTTCAGTGTTTCGAAGCAGTAAGCTACAACCAA  499

seq1  GGGGTATTTGGGCGCCCAGCAGGCAGCAGGAAGCCCCAGCAGGATAGGTA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATTTGGGCGCCCAGCAGGCAGCAGGAAGCCCCAGCAGGATAGGTA  549

seq1  ATTAGACCTCACAGCCAGAGGCCCAGCTCTTCTCACCCTGAAATAGAAGA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACCTCACAGCCAGAGGCCCAGCTCTTCTCACCCTGAAATAGAAGA  599

seq1  CAGAGAGGTTGGGGGTGGATTTCTTGGGTCTGGCTGAAAAGTCAGACCCA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGTTGGGGGTGGATTTCTTGGGTCTGGCTGAAAAGTCAGACCCA  649

seq1  AGGAGAGTCTTCATAGAGTCAGCCCATCTCACCATTTAAATTCCATGCTC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTCTTCATAGAGTCAGCCCATCTCACCATTTAAATTCCATGCTC  699

seq1  TCTTTAATCAGAACGTTCTTTAATGGGTTGTCTGGGAGCACATTTGAACC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATCAGAACGTTCTTTAATGGGTTGTCTGGGAGCACATTTGAACC  749

seq1  TCGTTGAAGCCCACTGTCTGCAAATCCAACTGGGTAGGAGGCTTAATCCG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGAAGCCCACTGTCTGCAAATCCAACTGGGTAGGAGGCTTAATCCG  799

seq1  TTTTTGTTTTTTGTTTTTTATTTATTTTTTATTTTTTGATACTCACAGGT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTTGTTTTTTATTTATTTTTTATTTTTTGATACTCACAGGT  849

seq1  CCCTCAGCCTTGCTGAACAAGGGACAAAATGAGAATTCTTAGAGTTAAAT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCCTTGCTGAACAAGGGACAAAATGAGAATTCTTAGAGTTAAAT  899

seq1  ATTACATCCAACCTTAAAACTGCCTTGTGTAGCAATGTCTTTAAATCCTA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATCCAACCTTAAAACTGCCTTGTGTAGCAATGTCTTTAAATCCTA  949

seq1  GCGTACATTTTCCTTTCCCAAGGAGCAACATAGCCTAGTATCTTTCACCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACATTTTCCTTTCCCAAGGAGCAACATAGCCTAGTATCTTTCACCT  999

seq1  GTGTCTTGGCTTTTAGGTTCAGGTTCTGGGCCTCAAGTTGTCTTTATCTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTGGCTTTTAGGTTCAGGTTCTGGGCCTCAAGTTGTCTTTATCTT  1049

seq1  GTGTACTTTTAATTTTTGAATGTGCCTCGGTATGTTACCGCTCATCTTTC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTTTTAATTTTTGAATGTGCCTCGGTATGTTACCGCTCATCTTTC  1099

seq1  TGTCAGTCTTTTTAAATGTTCATGCTAAGTTACAAGGAAAGAGAATTC  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTCTTTTTAAATGTTCATGCTAAGTTACAAGGAAAGAGAATTC  1147


seq1: chr7_46867627_46868733
seq2: B6Ng01-275M08.g_68_1166

seq1  GAATTCCTTAGATTTACTGTTTCACCATTAAGAGGTATTTTTCTGCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGATTTACTGTTTCACCATTAAGAGGTATTTTTCTGCCAGG  50

seq1  TATGAGAGTGCAGGCCTGTAACTCCAGCTACTTAGTGGTCAAGGCTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGTGCAGGCCTGTAACTCCAGCTACTTAGTGGTCAAGGCTGGAG  100

seq1  GATCACAAGCTCAAGACCAGCTTGGGCTGCAGACTGATTAAATTCAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAAGCTCAAGACCAGCTTGGGCTGCAGACTGATTAAATTCAGTGC  150

seq1  TAGTCTAGGCAGTTTCCTAAGACCTTGTTTCAAAACACGAAGTGTAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTAGGCAGTTTCCTAAGACCTTGTTTCAAAACACGAAGTGTAAAAG  200

seq1  GGCTGGGGAATAAAAGCTCAGTGCTAGATTGCTGGCCTGGGACGGCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGAATAAAAGCTCAGTGCTAGATTGCTGGCCTGGGACGGCCAAG  250

seq1  ACCGGGTACAGTTCAATCCCTAGCAACATACATGGAATTGTTTTTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGTACAGTTCAATCCCTAGCAACATACATGGAATTGTTTTTTAAAA  300

seq1  AATGTTTTATCCCAAAGAGATCTCAAAAACAATGATTGAATATGCAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTATCCCAAAGAGATCTCAAAAACAATGATTGAATATGCAGAAC  350

seq1  TTCAGACAAATACTGCTTGGAAAACTGTTTATACAAGTTATTTTACCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACAAATACTGCTTGGAAAACTGTTTATACAAGTTATTTTACCTGC  400

seq1  TTTATTTTCCCTCTTTGAATTTCTACTTTATTTTGGAACTTAGATTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCCCTCTTTGAATTTCTACTTTATTTTGGAACTTAGATTTTTG  450

seq1  TGTATTCTTTTACAACTTGCTAGAGGATCAAGAGACTTTGTAGCCATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTTTTACAACTTGCTAGAGGATCAAGAGACTTTGTAGCCATGTG  500

seq1  ACAGACGTTAATGCCTTCCTAGTTTCTTTTTAGTATGGCCATTTTCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACGTTAATGCCTTCCTAGTTTCTTTTTAGTATGGCCATTTTCCTGA  550

seq1  TATCATTGTACTTCTCCTTTATTTTATATCTAAAAAAGTTTAGTTTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTGTACTTCTCCTTTATTTTATATCTAAAAAAGTTTAGTTTTTAG  600

seq1  TTTGTGTAAACAGTAAATACCCGATGTGCTTTAGTGGTTGGTCGGATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTAAACAGTAAATACCCGATGTGCTTTAGTGGTTGGTCGGATGGC  650

seq1  AGGATCTTGGGAACACTGGATAGCTCAAAAGACTGGATCTATACAGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTGGGAACACTGGATAGCTCAAAAGACTGGATCTATACAGTGTG  700

seq1  GACCCAGGAGAAGAAAAGAGATTAGCAACTCAGACATAGCCTCAGACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGAGAAGAAAAGAGATTAGCAACTCAGACATAGCCTCAGACATG  750

seq1  GGGTAAAGGACCTAAGGCTGAGAACTGCACTTACCTTCTTCCCACACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAGGACCTAAGGCTGAGAACTGCACTTACCTTCTTCCCACACTAA  800

seq1  GTATGCCAACTGCCAGGAGAAGATTAGGTGGAACCTGGAAGTGTGCGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCAACTGCCAGGAGAAGATTAGGTGGAACCTGGAAGTGTGCGGTG  850

seq1  GAGGGAGGTGTGCCACAAGGATGGAGGCCACAGACTCAAGCTGCTCGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGTGTGCCACAAGGATGGAGGCCACAGACTCAAGCTGCTCGGCT  900

seq1  GTGGCAGTGGCAGCAGACATTTGGGAAGGGGCTCAGTATACCGTATTCAG  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGGCAGTGGCAGCAGACATTTGGGAA-GGGCTCAGTATACCGTATTCAG  949

seq1  AGGGGCTGTATCGATCACAGACCGTTTGTGATGGGTAACAGATCCTGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGTATCGATCACAGACCGTTTGTGATGGGTAACAGATCCTGGAA  999

seq1  AACAGAACTAAAGTAAGC-AGGGGTGGGCCTTCCTTCAGTCAGGAGGAAG  1049
      |||||||||||||||||| ||||||||||    ||||||||| |||  ||
seq2  AACAGAACTAAAGTAAGCAAGGGGTGGGC---TCTTCAGTCA-GAG--AG  1043

seq1  TACTGACCTTCA-GCGCTATGCCTTCTGCTTCTACTTCATTCTATTGCTC  1098
      ||||||| |||| ||||||||  |||||| ||||| ||||||||||||||
seq2  TACTGACTTTCAGGCGCTATG--TTCTGCCTCTAC-TCATTCTATTGCTC  1090

seq1  ATTTTAGTT  1107
      | |||||||
seq2  AATTTAGTT  1099


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