BAC Information

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BAC

Clone NameB6Ng01-277F07
Chromosome7 (Build37)
Map Location 9,622,669 - 9,747,940
singlet/doubletdoublet
Overlap geneLOC100042810, LOC665593, EG665582, EG434113
Upstream geneLOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598
Downstream geneEG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277F07.bB6Ng01-277F07.g
ACCGA077880GA077881
length1,106945
definitionB6Ng01-277F07.b B6Ng01-277F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,746,825 - 9,747,940)(9,622,669 - 9,623,608)
sequence
gaattcttttccagagatctaatgccaatttaaattctgactctagttag
ttatacactcacaggtagtcaaatggcgaactccacatactggattggag
tttttcatcctttctcattgctaaaatgtcatgagtagtcaggctaagga
tggtatttcatgtctttgcaaaaaaaaaaaaaaaaaaataccccagatat
ttaaaagctgggttatagagaaatattgttaaaatttatttctaaaacct
cacagtttatcactgatgactaaatttatataactaccatgactgtaaat
aataatgctgttatttcagtttaccaatgataatgtaaaactgtgaccaa
gatgaagataactcctatctggggacagaaataatatgctctatgttttg
gaacagcacgaacaaatcttttcttgctgagcttggtatatataatgaaa
ctctctgactgacagtccgtcaaggctgtaagattctctcttccaccatg
cccgacttaattctacatggccttctctatacctccatgaaggtatctgt
caacttctgctggtagtccctgtttgaaagcctatcatttttctgaatag
taagtatcctggaacaacctagattgacataagcataagtccaaccacat
ccattaattttcttaatagctatcaaattctcccaaagagacatgatgtt
aagaatttctgtcccatgataactcacacgtggagataagaagctgtcca
ggtacttccagaaacttatagataccccccaattgggtcctgtaagcaga
aacgaacacatagtctcttcattacagaaataattagggatagggctttg
tttttttttatgaaataaatatggtgtaggtattacagttttcccatcac
aacgggcccaagtgtatcttataatcaaagaacatattgggtaaagatca
ggattcctgttgatttcatccattgcaaaggccaatgccaagcgtatttg
tggttttagtcgtttttctgtaaagagtacagtgtttattatggcagatg
atatacatgatattgtactcaagagaggcactatgtaacctgaagttctg
catctg
gaattcaggacctttgctcactctggtcagtttgttcttataacccagcc
cccaaaaaggctgcatggtatatattcactaataagtagatatttgccaa
aacggtacagaatacccaagatacactccatagaccttaagaagttcaac
ctttaggaaggactaagagagaatgtttcaatcccacttagaaggggaaa
aatcacagcggggaggcagacaggaaacagaactacctcagttgtttgtg
gacaggggtgctggagagaatgaactggagagccaggagaatgaattgaa
gtgtgcaggatccaggggagggaagtgggtggacccttaaggaagtacta
cagacctgagatctgagagactcccaggactcagtggaggtaaccttagc
caaaattcccaaaagtgggggggagggaactcaaatagcccatgtccaga
atatagacgtagcctcaagtagagggccaggcttatcaacccagagtcaa
aattgctgatatatatcagaataatgcatggtcggacctcagtaagagaa
gatatgcctaattcttgacattctggaggctccatagaagggcgatacct
ggtgtagggacagagggggaagttagtaagcactctatgagaggcaagtg
ggaggaggaataggatgagaagttgtaggagggaaatccaggaaggttgt
ccaatggctgcaacaaaaataacaaaataatttaaagaaaataaagaatg
ggactagaacaattgctcagctgttcaatacttcttttttgtttgtttgt
ttgtttgtttgtttgatgtttgttttttatgaaacagggtttctctgtat
agcccttgcctgtcttggaactcattttgtaaactaaggctggactcgaa
cttcaaaaatctgcctggcctctataccccttctagtgctgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9746825_9747940
seq2: B6Ng01-277F07.b_45_1150 (reverse)

seq1  CAGATGCAGAAACTTCCAGTATACCATAGTGCTTCTCTTGAGTACAAATA  50
      ||||||||| ||||| |||  || |||||||| ||||||||||||||   
seq2  CAGATGCAG-AACTT-CAGGTTA-CATAGTGCCTCTCTTGAGTACAA--T  45

seq1  ATCATGTATAATCATCTGGCCATAATAAACACTGTACTCTTTTACAGAAA  100
      ||||||||| ||||||| ||||||||||||||||||||| ||||||||||
seq2  ATCATGTAT-ATCATCT-GCCATAATAAACACTGTACTC-TTTACAGAAA  92

seq1  AACGACTAAAAACCACAAATACGCTTTGGCATTGGCCTTTGCAATGGATG  150
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  AACGACT-AAAACCACAAATACGC-TTGGCATTGGCCTTTGCAATGGATG  140

seq1  AAATCAACAGGAATCCTGATCTTTTACCAAATATG-TCTTTGATTATAAG  199
      ||||||||||||||||||||| |||||| |||||| ||||||||||||||
seq2  AAATCAACAGGAATCCTGATC-TTTACCCAATATGTTCTTTGATTATAAG  189

seq1  ATACACTTTGGGCCGTTGTGATGGGAAAACTGTAATACCTACACCATATT  249
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  ATACACTTGGGCCCGTTGTGATGGGAAAACTGTAATACCTACACCATATT  239

seq1  TATTTCATAAAAAAAAACAAAGCCCTATCCCTAATTATTTCTGTAATGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATAAAAAAAAACAAAGCCCTATCCCTAATTATTTCTGTAATGAA  289

seq1  GAGACTATGTGTTCGTTTCTGCTTACAGGACCCAATTGGGGGGTATCTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATGTGTTCGTTTCTGCTTACAGGACCCAATTGGGGGGTATCTAT  339

seq1  AAGTTTCTGGAAGTACCTGGACAGCTTCTTATCTCCACGTGTGAGTTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTGGAAGTACCTGGACAGCTTCTTATCTCCACGTGTGAGTTATC  389

seq1  ATGGGACAGAAATTCTTAACATCATGTCTCTTTGGGAGAATTTGATAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACAGAAATTCTTAACATCATGTCTCTTTGGGAGAATTTGATAGCT  439

seq1  ATTAAGAAAATTAATGGATGTGGTTGGACTTATGCTTATGTCAATCTAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAAATTAATGGATGTGGTTGGACTTATGCTTATGTCAATCTAGG  489

seq1  TTGTTCCAGGATACTTACTATTCAGAAAAATGATAGGCTTTCAAACAGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCAGGATACTTACTATTCAGAAAAATGATAGGCTTTCAAACAGGG  539

seq1  ACTACCAGCAGAAGTTGACAGATACCTTCATGGAGGTATAGAGAAGGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAGCAGAAGTTGACAGATACCTTCATGGAGGTATAGAGAAGGCCA  589

seq1  TGTAGAATTAAGTCGGGCATGGTGGAAGAGAGAATCTTACAGCCTTGACG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATTAAGTCGGGCATGGTGGAAGAGAGAATCTTACAGCCTTGACG  639

seq1  GACTGTCAGTCAGAGAGTTTCATTATATATACCAAGCTCAGCAAGAAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCAGTCAGAGAGTTTCATTATATATACCAAGCTCAGCAAGAAAAG  689

seq1  ATTTGTTCGTGCTGTTCCAAAACATAGAGCATATTATTTCTGTCCCCAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCGTGCTGTTCCAAAACATAGAGCATATTATTTCTGTCCCCAGA  739

seq1  TAGGAGTTATCTTCATCTTGGTCACAGTTTTACATTATCATTGGTAAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTATCTTCATCTTGGTCACAGTTTTACATTATCATTGGTAAACT  789

seq1  GAAATAACAGCATTATTATTTACAGTCATGGTAGTTATATAAATTTAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACAGCATTATTATTTACAGTCATGGTAGTTATATAAATTTAGTC  839

seq1  ATCAGTGATAAACTGTGAGGTTTTAGAAATAAATTTTAACAATATTTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGATAAACTGTGAGGTTTTAGAAATAAATTTTAACAATATTTCTC  889

seq1  TATAACCCAGCTTTTAAATATCTGGGGTATTTTTTTTTTTTTTTTTTTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCCAGCTTTTAAATATCTGGGGTATTTTTTTTTTTTTTTTTTTGC  939

seq1  AAAGACATGAAATACCATCCTTAGCCTGACTACTCATGACATTTTAGCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATGAAATACCATCCTTAGCCTGACTACTCATGACATTTTAGCAA  989

seq1  TGAGAAAGGATGAAAAACTCCAATCCAGTATGTGGAGTTCGCCATTTGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGGATGAAAAACTCCAATCCAGTATGTGGAGTTCGCCATTTGAC  1039

seq1  TACCTGTGAGTGTATAACTAACTAGAGTCAGAATTTAAATTGGCATTAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTGAGTGTATAACTAACTAGAGTCAGAATTTAAATTGGCATTAGA  1089

seq1  TCTCTGGAAAAGAATTC  1116
      |||||||||||||||||
seq2  TCTCTGGAAAAGAATTC  1106

seq1: chr7_9622669_9623608
seq2: B6Ng01-277F07.g_62_1006

seq1  GAATTCAGGACCTTTGCTCACTCTGGTCAGTTTGTTCTTATAACCCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTTTGCTCACTCTGGTCAGTTTGTTCTTATAACCCAGCC  50

seq1  CCCAAAAAGGCTGCATGGTATATATTCACTAATAAGTAGATATTTGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAAGGCTGCATGGTATATATTCACTAATAAGTAGATATTTGCCAA  100

seq1  AACGGTACAGAATACCCAAGATACACTCCATAGACCTTAAGAAGTTCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTACAGAATACCCAAGATACACTCCATAGACCTTAAGAAGTTCAAC  150

seq1  CTTTAGGAAGGACTAAGAGAGAATGTTTCAATCCCACTTAGAAGGGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGAAGGACTAAGAGAGAATGTTTCAATCCCACTTAGAAGGGGAAA  200

seq1  AATCACAGCGGGGAGGCAGACAGGAAACAGAACTACCTCAGTTGTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGCGGGGAGGCAGACAGGAAACAGAACTACCTCAGTTGTTTGTG  250

seq1  GACAGGGGTGCTGGAGAGAATGAACTGGAGAGCCAGGAGAATGAATTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGGTGCTGGAGAGAATGAACTGGAGAGCCAGGAGAATGAATTGAA  300

seq1  GTGTGCAGGATCCAGGGGAGGGAAGTGGGTGGACCCTTAAGGAAGTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGGATCCAGGGGAGGGAAGTGGGTGGACCCTTAAGGAAGTACTA  350

seq1  CAGACCTGAGATCTGAGAGACTCCCAGGACTCAGTGGAGGTAACCTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGAGATCTGAGAGACTCCCAGGACTCAGTGGAGGTAACCTTAGC  400

seq1  CAAAATTCCCAAAAGTGGGGGGGAGGGAACTCAAATAGCCCATGTCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCCCAAAAGTGGGGGGGAGGGAACTCAAATAGCCCATGTCCAGA  450

seq1  ATATAGACGTAGCCTCAAGTAGAGGGCCAGGCTTATCAACCCAGAGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACGTAGCCTCAAGTAGAGGGCCAGGCTTATCAACCCAGAGTCAA  500

seq1  AATTGCTGATATATATCAGAATAATGCATGGTCGGACCTCAGTAAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGATATATATCAGAATAATGCATGGTCGGACCTCAGTAAGAGAA  550

seq1  GATATGCCTAATTCTTGACATTCTGGAGGCTCCATAGAAGGGCGATACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCCTAATTCTTGACATTCTGGAGGCTCCATAGAAGGGCGATACCT  600

seq1  GGTGTAGGGACAGAGGGGGAAGTTAGTAAGCACTCTATGAGAGGCAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGGGACAGAGGGGGAAGTTAGTAAGCACTCTATGAGAGGCAAGTG  650

seq1  GGAGGAGGAATAGGATGAGAAGTTGTAGGAGGGAAATCCAGGAAGG-TGT  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGAGGAGGAATAGGATGAGAAGTTGTAGGAGGGAAATCCAGGAAGGTTGT  700

seq1  CCAATGGCTGCAACAAAAATAACAAAATAATTTAAAGAAAATAAAGAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGCTGCAACAAAAATAACAAAATAATTTAAAGAAAATAAAGAATG  750

seq1  GGACTAGAACAATTGCTCAGCTGTTCAATACTTCTTTTTTGTTTGTTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGAACAATTGCTCAGCTGTTCAATACTTCTTTTTTGTTTGTTTGT  800

seq1  TTGTTTGTTTGTTTGTTGTTTGTTTTTTTTTGAGACAGGGTTTCTCTGTA  849
      ||||||||||||||| |||||| |||||| ||| ||||||||||||||||
seq2  TTGTTTGTTTGTTTGATGTTTG-TTTTTTATGAAACAGGGTTTCTCTGTA  849

seq1  TAGCCC-TGGCTGTCCTGGAACTCACTTTGTAGACT-AGGCTGGCCTCGA  897
      |||||| || ||||| ||||||||| |||||| ||| ||||||| |||||
seq2  TAGCCCTTGCCTGTCTTGGAACTCATTTTGTAAACTAAGGCTGGACTCGA  899

seq1  AC-TCAGAAATCTGCCT-GCCTCTAT-CCCTTCCAAGTGCTGGGAT  940
      || ||| |||||||||| |||||||| ||| | | |||||||||||
seq2  ACTTCAAAAATCTGCCTGGCCTCTATACCCCTTCTAGTGCTGGGAT  945