BAC Information

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BAC

Clone NameB6Ng01-277H22
Chromosome7 (Build37)
Map Location 125,885,545 - 126,018,944
singlet/doubletdoublet
Overlap gene9030624J02Rik, 2310008H09Rik, Iqck
Upstream geneLOC669758, Rps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik
Downstream geneGprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277H22.bB6Ng01-277H22.g
ACCGA078000GA078001
length2071,146
definitionB6Ng01-277H22.b B6Ng01-277H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,885,545 - 125,885,751)(126,017,808 - 126,018,944)
sequence
tagggacttggatcttggagtttgctctttccctaaatgagggaaagtag
tgggaatcagccagtgtaaccaggacaaactgttctggggtgtacgaatg
ggaggtacctatatctttattagtgaaaaagtctgatttttggcaactgt
tgagatagtaaggttgagtgtgtttagtgatggtggtggtggtggtggtg
aggcagc
gaattcagaacccatgtcaatgccaggtggctacggcagcccacctgtaa
ctccagcctctgacggaggagacaggatccccagagcaagtaagcaagtg
ggctagcaaggctgcatcaatgagctctgggttcgattgagagaccctcc
tcaatgaagaatctgcaagagtgataggaagatgatccctgacaccaacc
tcaggcctccacacaatgtgcacgacacacatgtacccatacataaatag
ggagaaagcctgtgtagatgatcaagagagaaagtgagggaagccactga
aggaagcagccctagagggcacagggccttcttctcagcagaattccaaa
gggcttggcactcagacttgctgggcattataggaatgagagggagaaag
gcaatgccactatgagggcaaagtgaaacatggctgctgcccacatttcc
ccatgggctgttgttctttcttgacgattaaaaaacttcccttcacacca
gcatgtccccttggctccccacccatcccagtgactcttctgtaaacaga
taaaacaaacgttagcaaagagaattccagtgggcacctgaacactcact
tctgattaagagtactactgcccaacaccaagatatggaccctgttcctg
gacacctgaggaagtcttccagaggcaaccactcccaggagcacctggat
agtgttttcctgtcttgttttgttttgtttttattcatggaagagatcca
tccagaaaacaaagccatgtacacagcaatacaaggaaagcataccaggt
gtaatggttacttttagataccaatttaaaatttagaatggactaagaca
ctctctcctagagttacattccagtcttttgtacctggcttagacattga
gactccttgttatagcatttgactctagaacttgcacccatgggccttct
gagttcttggacctttgcattcagacccaagagctgcaccaaccagcttc
ccattttctgatgcctttcagccaagagtagcaacactactgcttgcttt
cttgggttctccagctttgcgaacgctggctgttgggattgtgtcagctt
agtaatgttgtgttgaggtgaactcacttaagacatcctgttcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_125885545_125885751
seq2: B6Ng01-277H22.b_52_258

seq1  TAGGGACTTGGATCTTGGAGTTTGCTCTTTCCCTAAATGAGGGAAAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACTTGGATCTTGGAGTTTGCTCTTTCCCTAAATGAGGGAAAGTAG  50

seq1  TGGGAATCAGCCAGTGTAACCAGGACAAACTGTTCTGGGGTGTACGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCAGCCAGTGTAACCAGGACAAACTGTTCTGGGGTGTACGAATG  100

seq1  GGAGGTACCTATATCTTTATTAGTGAAAAAGTCTGATTTTTGGCAACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTACCTATATCTTTATTAGTGAAAAAGTCTGATTTTTGGCAACTGT  150

seq1  TGAGATAGTAAGGTTGAGTGTGTTTAGTGATGGTGGTGGTGGTGGTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGTAAGGTTGAGTGTGTTTAGTGATGGTGGTGGTGGTGGTGGTG  200

seq1  AGGCAGC  207
      |||||||
seq2  AGGCAGC  207

seq1: chr7_126017808_126018944
seq2: B6Ng01-277H22.g_64_1209 (reverse)

seq1  GATG-ACAGGAAGGTCTTTAGTGAG-TCACCTC-ACAC-ACATTACTAAA  46
      |||| ||||| | ||||| |||||| ||||||| |||| |||||||| ||
seq2  GATGAACAGG-ATGTCTTAAGTGAGTTCACCTCAACACAACATTACT-AA  48

seq1  GCTG-CACAATCCC-ACAG-CAGCTGTCCGC-AAGCTGGAGAACC--AGA  90
      |||| ||||||||| |||| |||| || ||| |||||||||||||  |||
seq2  GCTGACACAATCCCAACAGCCAGC-GTTCGCAAAGCTGGAGAACCCAAGA  97

seq1  AAGCCAGCCAGTAGTGTTGCTTACTCTTGGGCTG-AAGGCATCAGAAATG  139
      |||| || |||||||||||| ||||||| ||||| |||||||||||||  
seq2  AAGCAAG-CAGTAGTGTTGC-TACTCTT-GGCTGAAAGGCATCAGAAAAT  144

seq1  GGAAAGCTGG-TGGTGCAGCTCTT-GGTCTGAATGCAAAGGTCCAAG-AC  186
      || ||||||| ||||||||||||| |||||||||||||||||||||| ||
seq2  GGGAAGCTGGTTGGTGCAGCTCTTGGGTCTGAATGCAAAGGTCCAAGAAC  194

seq1  TCAG-AGGGCCATGGGTGCAAGTTCTAGAGTCAAATGCTATAACAAGGAG  235
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGCCCATGGGTGCAAGTTCTAGAGTCAAATGCTATAACAAGGAG  244

seq1  TCTCAATGTCTAAGCCAGGTACAAAAGACTGGAATGTAACTCTAGGAGAG  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGTCTAAGCCAGGTACAAAAGACTGGAATGTAACTCTAGGAGAG  294

seq1  AGTGTCTTAGTCCATTCTAAATTTTAAATTGGTATCTAAAAGTAACCATT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTAGTCCATTCTAAATTTTAAATTGGTATCTAAAAGTAACCATT  344

seq1  ACACCTGGTATGCTTTCCTTGTATTGCTGTGTACATGGCTTTGTTTTCTG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGTATGCTTTCCTTGTATTGCTGTGTACATGGCTTTGTTTTCTG  394

seq1  GATGGATCTCTTCCATGAATAAAAACAAAACAAAACAAGACAGGAAAACA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATCTCTTCCATGAATAAAAACAAAACAAAACAAGACAGGAAAACA  444

seq1  CTATCCAGGTGCTCCTGGGAGTGGTTGCCTCTGGAAGACTTCCTCAGGTG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAGGTGCTCCTGGGAGTGGTTGCCTCTGGAAGACTTCCTCAGGTG  494

seq1  TCCAGGAACAGGGTCCATATCTTGGTGTTGGGCAGTAGTACTCTTAATCA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAACAGGGTCCATATCTTGGTGTTGGGCAGTAGTACTCTTAATCA  544

seq1  GAAGTGAGTGTTCAGGTGCCCACTGGAATTCTCTTTGCTAACGTTTGTTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGTGTTCAGGTGCCCACTGGAATTCTCTTTGCTAACGTTTGTTT  594

seq1  TATCTGTTTACAGAAGAGTCACTGGGATGGGTGGGGAGCCAAGGGGACAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTTACAGAAGAGTCACTGGGATGGGTGGGGAGCCAAGGGGACAT  644

seq1  GCTGGTGTGAAGGGAAGTTTTTTAATCGTCAAGAAAGAACAACAGCCCAT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGTGAAGGGAAGTTTTTTAATCGTCAAGAAAGAACAACAGCCCAT  694

seq1  GGGGAAATGTGGGCAGCAGCCATGTTTCACTTTGCCCTCATAGTGGCATT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATGTGGGCAGCAGCCATGTTTCACTTTGCCCTCATAGTGGCATT  744

seq1  GCCTTTCTCCCTCTCATTCCTATAATGCCCAGCAAGTCTGAGTGCCAAGC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTCCCTCTCATTCCTATAATGCCCAGCAAGTCTGAGTGCCAAGC  794

seq1  CCTTTGGAATTCTGCTGAGAAGAAGGCCCTGTGCCCTCTAGGGCTGCTTC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGAATTCTGCTGAGAAGAAGGCCCTGTGCCCTCTAGGGCTGCTTC  844

seq1  CTTCAGTGGCTTCCCTCACTTTCTCTCTTGATCATCTACACAGGCTTTCT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGGCTTCCCTCACTTTCTCTCTTGATCATCTACACAGGCTTTCT  894

seq1  CCCTATTTATGTATGGGTACATGTGTGTCGTGCACATTGTGTGGAGGCCT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTTATGTATGGGTACATGTGTGTCGTGCACATTGTGTGGAGGCCT  944

seq1  GAGGTTGGTGTCAGGGATCATCTTCCTATCACTCTTGCAGATTCTTCATT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGGTGTCAGGGATCATCTTCCTATCACTCTTGCAGATTCTTCATT  994

seq1  GAGGAGGGTCTCTCAATCGAACCCAGAGCTCATTGATGCAGCCTTGCTAG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGTCTCTCAATCGAACCCAGAGCTCATTGATGCAGCCTTGCTAG  1044

seq1  CCCACTTGCTTACTTGCTCTGGGGATCCTGTCTCCTCCGTCAGAGGCTGG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTGCTTACTTGCTCTGGGGATCCTGTCTCCTCCGTCAGAGGCTGG  1094

seq1  AGTTACAGGTGGGCTGCCGTAGCCACCTGGCATTGACATGGGTTCTGAAT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGGTGGGCTGCCGTAGCCACCTGGCATTGACATGGGTTCTGAAT  1144

seq1  TC  1137
      ||
seq2  TC  1146