BAC Information

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BAC

Clone NameB6Ng01-277J14
Chromosome7 (Build37)
Map Location 138,047,265 - 138,204,977
singlet/doubletdoublet
Overlap genePlekha1, Htra1, Dmbt1
Upstream geneLOC100043150, Fgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249
Downstream gene4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277J14.bB6Ng01-277J14.g
ACCGA078076GA078077
length1,0941,057
definitionB6Ng01-277J14.b B6Ng01-277J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,047,265 - 138,048,343)(138,203,920 - 138,204,977)
sequence
gaattcagtggtggcgagaatgtcggaaccttgcgggagagcaggaaacg
cacagtgcgtcagtcctgtgctgcccctgctaacaggatagtctgcgttc
agtccccaggtcacaggagccacgtccaagggagggggcagcctacaaaa
tacagtaatggctgtcatctgcaggagtctgttcctctttctagaggagt
gaggaactcttctacactaaacagaaagagacagcgagaacactgtccct
gtagggctgtgtgacccacctgctgactggtggcagtaacgtgagcactt
cagggtagcatgcggattgcagcagctcagctccaagcggctgttcttag
gctcttttgtaaattcatgattggttcagtgttcaagaaagacagaaagg
tggggagaactttctggtagaaaaacaaacaggaattacaagcggctcat
tcggaaagattacgctgagtgtggagtggagtggcagcgtgcatggctag
tgtgtgtgtgtgtgagtgaggccttgggttagagccgcagcactcctaag
cactacaaatcactaaaggtcttcagaagtccgtgacgacgctcagtgtc
actcaagcttcgggggatacaggtgtgagtgcacggatagtactcaccag
tcatgaggaggctgcgtctgagtgaaaagctcccatacccactgtcctca
gagaaaataagtggagagaagaaatagtatttcttcaaattctgtgtagg
tgaatgatgttagaaaaatcaccatttggcaggcagctatgccaataatg
atttcaggtaagaatctttcgatacttgtaagaccagtgggagatttttg
ttttaaaatcttaaaatcaagtactgcatagataggcctccaaagtgtct
cagtagaatacttactgggtcctaggtggtccaccatgaacaagtctgct
gcttagtgactgtcaactgaaaccagaaaccgagccttcagacaacagtg
gggtgtgggtggcatggaaactaagagctgttcctgctgctgcaagtctc
agaaggggtgggtctggaaagtagctccatgttaagaatggctc
gaattccagccgagtgtcatttattagcatggagtgtgtcaggatcaatc
acaacatagggggaagttatacactgatacaggtccatatttgcaatgta
cttaccaggtgtgggactgcttgattgagaagctatcaaaaaaataaaaa
caaattcagagtgtgcatttcatccacaagaatcctggcaaaaatccttt
ctgaagtggtagcttttacaactctcctatgtgggccccaccccaaagac
caaactcaactttctaggttcctttttgattggtcaaaagagcaagatcg
tcttagaaatattctagtccaggtcatttgtatcatgggcgtctacacca
attacacagggggtgaatcaaaacgatgaaggaaaacagcctgactctgt
attactgagcatgaaaatctttccctcttgccgtcctcacgtgagcgatg
tgatataccactgagtcacacaaggctgataatcgatgagggactagatc
tgggatgactggcaggacacagaaaggtgtctatgggtcacacaccaact
gataaagacttgagtgtcagatgctttgggtagaagcaaagcagtctctg
taacccatttccttggaaactaagagatgatctctcaggaatggtgaggt
gtggttaatgttgctggtgtatcatgtgtgcataaatatgtctttatgaa
tatgcataatctgtggaatcagcaggaaggctcccaggagccatgaggga
ggatggtcacagttccaccctccatcctgtgagctgcagtacactctcct
gagttaggcaccctgttaggctcttggtacatgtcccaagctaggaacga
aaggagcaatgagagcttccagccctgcagagaatccagcatatctaggc
ccctgaaggttcaacagagagtttgaaacagggacagtgctactgggagg
tgtgtgggagaatatacacggacactcatgacatagtattgtacatgtct
gggtctgtggtgtcagtgtccacatctgactctcgtgtgtcatgggatgg
gtatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_138047265_138048343
seq2: B6Ng01-277J14.b_47_1140

seq1  GAATTCAGTGGTGGCGAGAATGTCGGAACCTTGCGGGAGAGCAGGAAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTGGCGAGAATGTCGGAACCTTGCGGGAGAGCAGGAAACG  50

seq1  CACAGTGCGTCAGTCCTGTGCTGCCCCTGCTAACAGGATAGTCTGCGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCGTCAGTCCTGTGCTGCCCCTGCTAACAGGATAGTCTGCGTTC  100

seq1  AGTCCCCAGGTCACAGGAGCCACGTCCAAGGGAGGGGGCAGCCTACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCAGGTCACAGGAGCCACGTCCAAGGGAGGGGGCAGCCTACAAAA  150

seq1  TACAGTAATGGCTGTCATCTGCAGGAGTCTGTTCCTCTTTCTAGAGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAATGGCTGTCATCTGCAGGAGTCTGTTCCTCTTTCTAGAGGAGT  200

seq1  GAGGAACTCTTCTACACTAAACAGAAAGAGACAGCGAGAACACTGTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACTCTTCTACACTAAACAGAAAGAGACAGCGAGAACACTGTCCCT  250

seq1  GTAGGGCTGTGTGACCCACCTGCTGACTGGTGGCAGTAACGTGAGCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCTGTGTGACCCACCTGCTGACTGGTGGCAGTAACGTGAGCACTT  300

seq1  CAGGGTAGCATGCGGATTGCAGCAGCTCAGCTCCAAGCGGCTGTTCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGCATGCGGATTGCAGCAGCTCAGCTCCAAGCGGCTGTTCTTAG  350

seq1  GCTCTTTTGTAAATTCATGATTGGTTCAGTGTTCAAGAAAGACAGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTGTAAATTCATGATTGGTTCAGTGTTCAAGAAAGACAGAAAGG  400

seq1  TGGGGAGAACTTTCTGGTAGAAAAACAAACAGGAATTACAAGCGGCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGAACTTTCTGGTAGAAAAACAAACAGGAATTACAAGCGGCTCAT  450

seq1  TCGGAAAGATTACGCTGAGTGTGGAGTGGAGTGGCAGCGTGCATGGCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAAGATTACGCTGAGTGTGGAGTGGAGTGGCAGCGTGCATGGCTAG  500

seq1  TGTGTGTGTGTGTGAGTGAGGCCTTGGGTTAGAGCCGCAGCACTCCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGAGTGAGGCCTTGGGTTAGAGCCGCAGCACTCCTAAG  550

seq1  CACTACAAATCACTAAAGGTCTTCAGAAGTCCGTGACGACGCTCAGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAAATCACTAAAGGTCTTCAGAAGTCCGTGACGACGCTCAGTGTC  600

seq1  ACTCAAGCTTCGGGGGATACAGGTGTGAGTGCACGGATAGTACTCACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCTTCGGGGGATACAGGTGTGAGTGCACGGATAGTACTCACCAG  650

seq1  TCATGAGGAGGCTGCGTCTGAGTGAAAAGCTCCCATACCCACTGTCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGAGGCTGCGTCTGAGTGAAAAGCTCCCATACCCACTGTCCTCA  700

seq1  GAGAAAATAAGTGGAGAGAAGAAATAGTATTTCTTCAAATTCTGTGTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATAAGTGGAGAGAAGAAATAGTATTTCTTCAAATTCTGTGTAGG  750

seq1  TGAATGATGTTAGAAAAATCACCATTTGGCAGGCAGCTATGCCAATAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATGTTAGAAAAATCACCATTTGGCAGGCAGCTATGCCAATAATG  800

seq1  ATTTCAGGTAAGAATC-TTCGATACTTGTAAGACCAGTGGGAGATTTTTG  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTTCAGGTAAGAATCTTTCGATACTTGTAAGACCAGTGGGAGATTTTTG  850

seq1  TTTTAAAATCTTAAAATCAAGTACTGCATAGATAGG-CTCC-AAGTGTCT  897
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  TTTTAAAATCTTAAAATCAAGTACTGCATAGATAGGCCTCCAAAGTGTCT  900

seq1  CAGTAGAATACTTACT-GGTCCTA-GTGGTCCACCATGAACAAGTCTGCT  945
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  CAGTAGAATACTTACTGGGTCCTAGGTGGTCCACCATGAACAAGTCTGCT  950

seq1  GCTTAGTGACTGTC-ACTGAAACCAGAAACCGAG-CTTCAGACAACAGT-  992
      |||||||||||||| ||||||||||||||||||| |||||||||||||| 
seq2  GCTTAGTGACTGTCAACTGAAACCAGAAACCGAGCCTTCAGACAACAGTG  1000

seq1  GGGTGT-GGTGGCAT-GAAACT-AGAGCTG-TCCTGCTGCTGCAAGTCTC  1038
      |||||| |||||||| |||||| ||||||| |||||||||||||||||||
seq2  GGGTGTGGGTGGCATGGAAACTAAGAGCTGTTCCTGCTGCTGCAAGTCTC  1050

seq1  AGAAGGTGTTGGTCT-GAGAGTAGCTCCATG-TAAG-ATGGCTC  1079
      |||||| || ||||| || |||||||||||| |||| |||||||
seq2  AGAAGGGGTGGGTCTGGAAAGTAGCTCCATGTTAAGAATGGCTC  1094

seq1: chr7_138203920_138204977
seq2: B6Ng01-277J14.g_67_1123 (reverse)

seq1  GACATACACAATCCCAGAACACAC-AGAGACAGATGTGGACACTGACA-C  48
      ||||||| | ||||||  |||||| |||| |||||||||||||||||| |
seq2  GACATAC-CCATCCCATGACACACGAGAGTCAGATGTGGACACTGACACC  49

seq1  ACAGACACAGACATGTAC-ATTCTATGTCATTGAGTGTCCGTGTATATTC  97
      |||||| ||||||||||| || |||||||| |||||||||||||||||||
seq2  ACAGACCCAGACATGTACAATACTATGTCA-TGAGTGTCCGTGTATATTC  98

seq1  TCCCACAACACCT-CCAGTAGCACTTGTCCCTTGTTCAAAACTCTCTGTT  146
      |||||| |||||| |||||||||| |||||| ||||  ||||||||||||
seq2  TCCCAC-ACACCTCCCAGTAGCAC-TGTCCC-TGTTTCAAACTCTCTGTT  145

seq1  GAACCTTCAGGGGCCTAGATATGCTGGATTCTCTGCAGGGCTGGAAGCTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTCAGGGGCCTAGATATGCTGGATTCTCTGCAGGGCTGGAAGCTC  195

seq1  TCATTGCTCCTTTCGTTCCTAGCTTGGGACATGTACCAAGAGCCTAACAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTCCTTTCGTTCCTAGCTTGGGACATGTACCAAGAGCCTAACAG  245

seq1  GGTGCCTGACTCAGGAGAGTGTACTGCAGCTCACAGGATGGAGGGTGGAA  296
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTAACTCAGGAGAGTGTACTGCAGCTCACAGGATGGAGGGTGGAA  295

seq1  CTGTGACCATCCTCCCTCATGGCTCCTGGGAGCCTTCCTGCTGATTCCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCATCCTCCCTCATGGCTCCTGGGAGCCTTCCTGCTGATTCCAC  345

seq1  AGATTATGCATATTCATAAAGACATATTTATGCACACATGATACACCAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGCATATTCATAAAGACATATTTATGCACACATGATACACCAGC  395

seq1  AACATTAACCACACCTCACCATTCCTGAGAGATCATCTCTTAGTTTCCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAACCACACCTCACCATTCCTGAGAGATCATCTCTTAGTTTCCAA  445

seq1  GGAAATGGGTTACAGAGACTGCTTTGCTTCTACCCAAAGCATCTGACACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGGTTACAGAGACTGCTTTGCTTCTACCCAAAGCATCTGACACT  495

seq1  CAAGTCTTTATCAGTTGGTGTGTGACCCATAGACACCTTTCTGTGTCCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTTATCAGTTGGTGTGTGACCCATAGACACCTTTCTGTGTCCTG  545

seq1  CCAGTCATCCCAGATCTAGTCCCTCATCGATTATCAGCCTTGTGTGACTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCATCCCAGATCTAGTCCCTCATCGATTATCAGCCTTGTGTGACTC  595

seq1  AGTGGTATATCACATCGCTCACGTGAGGACGGCAAGAGGGAAAGATTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTATATCACATCGCTCACGTGAGGACGGCAAGAGGGAAAGATTTTC  645

seq1  ATGCTCAGTAATACAGAGTCAGGCTGTTTTCCTTCATCGTTTTGATTCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAGTAATACAGAGTCAGGCTGTTTTCCTTCATCGTTTTGATTCAC  695

seq1  CCCCTGTGTAATTGGTGTAGACGCCCATGATACAAATGACCTGGACTAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGTAATTGGTGTAGACGCCCATGATACAAATGACCTGGACTAGA  745

seq1  ATATTTCTAAGACGATCTTGCTCTTTTGACCAATCAAAAAGGAACCTAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTAAGACGATCTTGCTCTTTTGACCAATCAAAAAGGAACCTAGA  795

seq1  AAGTTGAGTTTGGTCTTTGGGGTGGGGCCCACATAGGAGAGTTGTAAAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAGTTTGGTCTTTGGGGTGGGGCCCACATAGGAGAGTTGTAAAAG  845

seq1  CTACCACTTCAGAAAGGATTTTTGCCAGGATTCTTGTGGATGAAATGCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTTCAGAAAGGATTTTTGCCAGGATTCTTGTGGATGAAATGCAC  895

seq1  ACTCTGAATTTGTTTTTATTTTTTTGATAGCTTCTCAATCAAGCAGTCCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAATTTGTTTTTATTTTTTTGATAGCTTCTCAATCAAGCAGTCCC  945

seq1  ACACCTGGTAAGTACATTGCAAATATGGACCTGTATCAGTGTATAACTTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGTAAGTACATTGCAAATATGGACCTGTATCAGTGTATAACTTC  995

seq1  CCCCTATGTTGTGATTGATCCTGACACACTCCATGCTAATAAATGACACT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATGTTGTGATTGATCCTGACACACTCCATGCTAATAAATGACACT  1045

seq1  CGGCTGGAATTC  1058
      ||||||||||||
seq2  CGGCTGGAATTC  1057