BAC Information

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BAC

Clone NameB6Ng01-277K17
Chromosome7 (Build37)
Map Location 24,127,548 - 24,128,688
singlet/doubletsinglet
Overlap geneNlrp4e
Upstream geneLOC100043048, LOC100043632, EG667485, V1rd14, LOC100043051, LOC100043058, EG435947, EG667504, EG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664
Downstream geneLOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277K17.bB6Ng01-277K17.g
ACCGA078128GA078129
length1,1971,146
definitionB6Ng01-277K17.b B6Ng01-277K17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaacaggagccagggtccaggagacatgagagaattccttccat
cccatgtaagtgaattatcactaccaggtcccgggggtcaagatctagcc
tcgactggaaccaaggctgtctgcatgtagcccattgccccacaactttc
catacctagttctgaacatccctaactacccacccccttttccctcccat
catgttcccttcctccacctgcctcatttgtctattttatttcaccttgt
gaaagaaattcaagcatcatcatttgggacttattttaaagctcctttgg
ttttctggaaaaaccaaaactttatatataatatccacatataaatgagt
acaaaccatgattgtcagattggagtctgagttacatcacatacattata
tatatattctttatttatatttcaagggttattcctttcctggtttcccc
tctacaaaccctctatgtgtccttgttatataatggagtatcttttaggt
atatgcccaggagtggtatagcttcatcctgaggtagttctatgtccaat
tttctgtggattctggagactgcattctagagtggttgtcagcttgaaat
cctgccaacaatagggctgtgttcctctttctccacatcctcaccagcac
ttgctgttatctgagttttttatcttagccattctgactgttgttaggga
gaatctcaaggttgtttgatttgcagttccctgatgacaaaagatgttga
acatttctttaggtgctgcttggccatctgggattcctcagttgagaact
ctttgcttcgctttgtacctcatttttaatagggatatttggttctttgg
aatctaacttcttgagttcttcatatatattggatattagccctctatca
aggtaggtttggtaaagatctttttcctatctgttagttgccttttgcct
tattgacagtgctccttccttataaaagttttgcaagtttatgagtctca
tttgttcatacttgatcttagagcataggtcattagtgttctgtttagga
aattttcccctgttaccatgtgcctcaaagcaccttcccactttctcttt
tataggttcagttatccgttttatgcaagatctggatccatgggactgat
cttgatacggatagactggcaattgcatttttccataatgcgtggat
gaattctctctacctttgactctagatgggacctggccagctgtttgaag
tttctgcccccttgactttacacaatgaaagagtgtaatctgtaatagtg
agctaaattggaacctctctcccccaaatttatttttataaggatatttt
tatcacaacaacagaaatgaaactaaaccacatagactttattttaaaat
atattttcatactgtttattatacaagacaacattgctatggttttctat
atgacaataatcatgtaactatcattgctaatataaaggatttagattag
attcaggtaagttcttcagaacattagcactgtcaatgaatttactcagt
ttcaatgctagatataatgtgaaatcagatgaagggaaatatgtttcact
aagccaggggttcctcattatgcttgaatattttgtcactgatactctaa
aattgtggaactgttctctttcccctcttacatgcctttctatccctgtg
acaggttagccaaatgttccctcagtgaggaatgttggcactacctttca
gaagttcttaggcggaacaaaaccttgacccacctagatatcagcttcaa
tgacctaaaggacgaagggctgaaggttctctgtggggctctcactctcc
cagacagtgtcctcatatcactgaggtaggtttctttgagcttggccttg
gaggccctgtttaggaatctttaatgtatatgcctgagagtatgcagggt
agagtcactcaccgcaggcatctgaagacccttaggacagatagatctgt
gccttggcctctgtgtcatggttttggtgtgtggtgggaagcctctcaga
atggggactgagagaaagaggaattatgactggagccaaagggatggtta
agaagtttgggatgggtgctagaagataaacggatatcaacagatgggaa
aagagagctcagatcctagagagaagggttgtatttaggtgatttctcat
cactatgactgtgatggaaatattctgacagaagcaacttaaggagcagg
acattgggagttcatgtattggaacggtctcatctcctcctgttggaaaa
gccatggatggagagggctcatatggcagcggtggagtatataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24127548_24128688
seq2: B6Ng01-277K17.g_66_1211

seq1  GAATTCTCTCTACCTTTGACTCTAGATGGGACCTGGCCAGCTGTTTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTACCTTTGACTCTAGATGGGACCTGGCCAGCTGTTTGAAG  50

seq1  TTTCTGCCCCCTTGACTTTACACAATGAAAGAGTGTAATCTGTAATAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCCCCTTGACTTTACACAATGAAAGAGTGTAATCTGTAATAGTG  100

seq1  AGCTAAATTGGAACCTCTCTCCCCCAAATTTATTTTTATAAGGATATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAATTGGAACCTCTCTCCCCCAAATTTATTTTTATAAGGATATTTT  150

seq1  TATCACAACAACAGAAATGAAACTAAACCACATAGACTTTATTTTAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAACAACAGAAATGAAACTAAACCACATAGACTTTATTTTAAAAT  200

seq1  ATATTTTCATACTGTTTATTATACAAGACAACATTGCTATGGTTTTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCATACTGTTTATTATACAAGACAACATTGCTATGGTTTTCTAT  250

seq1  ATGACAATAATCATGTAACTATCATTGCTAATATAAAGGATTTAGATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATAATCATGTAACTATCATTGCTAATATAAAGGATTTAGATTAG  300

seq1  ATTCAGGTAAGTTCTTCAGAACATTAGCACTGTCAATGAATTTACTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTAAGTTCTTCAGAACATTAGCACTGTCAATGAATTTACTCAGT  350

seq1  TTCAATGCTAGATATAATGTGAAATCAGATGAAGGGAAATATGTTTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCTAGATATAATGTGAAATCAGATGAAGGGAAATATGTTTCACT  400

seq1  AAGCCAGGGGTTCCTCATTATGCTTGAATATTTTGTCACTGATACTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGGGTTCCTCATTATGCTTGAATATTTTGTCACTGATACTCTAA  450

seq1  AATTGTGGAACTGTTCTCTTTCCCCTCTTACATGCCTTTCTATCCCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGAACTGTTCTCTTTCCCCTCTTACATGCCTTTCTATCCCTGTG  500

seq1  ACAGGTTAGCCAAATGTTCCCTCAGTGAGGAATGTTGGCACTACCTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTAGCCAAATGTTCCCTCAGTGAGGAATGTTGGCACTACCTTTCA  550

seq1  GAAGTTCTTAGGCGGAACAAAACCTTGACCCACCTAGATATCAGCTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTTAGGCGGAACAAAACCTTGACCCACCTAGATATCAGCTTCAA  600

seq1  TGACCTAAAGGACGAAGGGCTGAAGGTTCTCTGTGGGGCTCTCACTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAAAGGACGAAGGGCTGAAGGTTCTCTGTGGGGCTCTCACTCTCC  650

seq1  CAGACAGTGTCCTCATATCACTGAGGTAGGTTTCTTTGAGCTTGGCCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTGTCCTCATATCACTGAGGTAGGTTTCTTTGAGCTTGGCCTTG  700

seq1  GAGGCCCTGTTTAGGAATCTTTAATGTATATGCCTGAGAGTATGCAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTGTTTAGGAATCTTTAATGTATATGCCTGAGAGTATGCAGGGT  750

seq1  AGAGTCACTCACCGCAGGCATCTGAAGACCCTTAGGACAGATAGATCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACTCACCGCAGGCATCTGAAGACCCTTAGGACAGATAGATCTGT  800

seq1  GCCTTGGCCTCTGTGTCATGGTTTTGGTGTGTGGTGGGAAGCCTCTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGCCTCTGTGTCATGGTTTTGGTGTGTGGTGGGAAGCCTCTCAGA  850

seq1  ATGGGGACTGAGAGAAAGAGGAATTATGACTGGAGCCAAAGGGATGGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGACTGAGAGAAAGAGGAATTATGACTGGAGCCAAAGGGATGGTTA  900

seq1  AGAAGTTT-GGATGGGTGCTAGAAGATAAACGGATATCAACAGAT-GGAA  948
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  AGAAGTTTGGGATGGGTGCTAGAAGATAAACGGATATCAACAGATGGGAA  950

seq1  AAGAGAGCTCAGATCCTAGAGAGAAGGG-TGTA-TTAGTGAATTTCTCAT  996
      |||||||||||||||||||||||||||| |||| ||||   |||||||||
seq2  AAGAGAGCTCAGATCCTAGAGAGAAGGGTTGTATTTAGGTGATTTCTCAT  1000

seq1  CACTATGACTGTGAT-GAAATA-TCTGACAGAAGCAACTTAAGGGAGGCA  1044
      ||||||||||||||| |||||| |||||||||||||||||||||   |||
seq2  CACTATGACTGTGATGGAAATATTCTGACAGAAGCAACTTAAGG--AGCA  1048

seq1  GGGACATT-GGAGGTCATGGTATGGAACGGTCTCATCT-CTCCTGTTGGG  1092
       ||||||| |||| |||||   |||||||||||||||| |||||||||| 
seq2  -GGACATTGGGAGTTCATGTATTGGAACGGTCTCATCTCCTCCTGTTGG-  1096

seq1  AAAAAAGCAT-GATGGAGAGGCCTCATAGTGGCAGCGGT-GAGTATAAAA  1140
       ||||  ||| |||||||||| |||||| |||||||||| ||||||| ||
seq2  -AAAAGCCATGGATGGAGAGGGCTCATA-TGGCAGCGGTGGAGTATATAA  1144

seq1  A-  1141
      | 
seq2  AA  1146