BAC Information

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BAC

Clone NameB6Ng01-278C16
Chromosome7 (Build37)
Map Location 50,113,124 - 50,240,184
singlet/doubletdoublet
Overlap geneLOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543
Upstream geneEG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964
Downstream geneLOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278C16.bB6Ng01-278C16.g
ACCGA078483GA078484
length1,1271,120
definitionB6Ng01-278C16.b B6Ng01-278C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,239,054 - 50,240,184)(50,113,124 - 50,114,255)
sequence
gaattctttcaagtcatcaaacatacataggttttctcaccagcatgtgt
tcttttatatattcaaagactattgctgttacacacaaatgttttattac
attgattacattttttaaagatttattttatttatcatatgtagatacac
tgtagctgtattcagacaccggaaacggtaatctggtcttgctacagatg
gttgtgagccaccatgtgcttgctgggatttgaactcaggacttctagaa
gaacagtcagtgttctcaactgctaagccatctctccagcccccattgat
tacatattttgggtttctctccagaatgtgtccctgtatgtactcagaga
ctgcagtgacttgcaaaggctttaccacagtgagtccgttcatgaggctt
ctctacagtatgtgtacttcttggcatttggtgataaaagggtttgccac
attgcttgcattcacagggcttctctccagcacgaatactgtcatgatga
tgattacagaagtgtgcaaagccttcaaatattaaatacattcataaggt
ttctcttcagaatgattctttgcatgcctttgaagatgactgtgacatac
aaaggcttcatcacactgatggcatttggagggttttgctagagtatata
ttcttttgcttagttgaaatgcacctgaataaaaaatggtgttaccatat
tgcttacattcatagattttctcttcagtatgtgttctttgatgtattca
agcataactgtgttgtaaaaatggtttatcacgtcaattatatttgtacg
gtttcattccagcattttttgtatgtgtgtatatggagactactgtgaca
agaaaatacttcactacatgaaatatctccatagtgtttctcaccattac
attttctttaatgtattcagaggtaacagtgttgtgaaatggctttatca
cttctatcatgttgagggtttctctctaatatctttttttttttctttta
gaccaggtttctctgttgtagtctggctgtcctgggaactcactctgtag
acagctgggctggactcagaattccaccttgcttctgcttccaagtgctt
ggaattaaaggcatgcaccacactgcc
gaattcctctcacagcacgatcagtagcacacagagcaagacacactaac
cactcaatcctcctcatctacagcattgaatgagcaacatggtacccaga
aacaccctcctccacttctgactggcaggtcagactggaggccctgattg
gccaacaagtctcgagtgacataagcacctcccttaaggttagagtgtga
ggaagtggcacagcatagtgattcctggcttatgctgctggtccagggct
aattgtttttcagatatgtaggttaagactgccctaaagggacaagacaa
ggtggttcctctaccaggcttctctctagagctacaccttttgagatctg
gaaagatttgcattttacttgtgctggtcctctagcaccctaccctactc
ttttccagaacttccccttcttcttgcaaggctgagagcttgcaaggctt
gctattcaacttgcagtttaataatcaatctggcccacaaggaaagggtg
ctaagaatattaacaattaaagggagattttagaaaacactaagattttt
gttctgtggtttcatggttgggtcaggtaaattgcagcttacttttcacc
tggcaggtatgagactttacacagccctgggagaaaaggaggaagcaggt
gataaacactgtggagcactactgttagccagcacctctccctcagtggg
aagggggaaacacagctgtattaataagtctatgtagatgaacagaactg
atgggacggatctctctgtgtatggagaaagtggatgtattggaatggct
tgaaagctactgtctgcaaatggacagatgaagaatacagtagtgcttca
gtccgtttagctgaatgtcttgactggtcttcagtatataccagaattat
gaagaagggaggctctaacaccagtttaaaaaaatgtacttgctagccag
aagtaggatatgacgacaggagaaagactacaatctcaatgatctttata
aatgtaatctgcacagaagctggtggcctacataaagattttctcttatc
actcaaagattcaaatcaaaaaggtttacacctaaaaagattaataagaa
aattccctgtcatactgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50239054_50240184
seq2: B6Ng01-278C16.b_43_1169 (reverse)

seq1  GGCAGTGGTGGTGCATGCCTTTAA-TCCCAGCACTTGGGAGGCAGAGGC-  48
      |||||| ||||||||||||||||| ||| ||||||| ||| ||||| || 
seq2  GGCAGT-GTGGTGCATGCCTTTAATTCCAAGCACTT-GGAAGCAGAAGCA  48

seq1  AGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTT-CCA  97
      ||||||| ||||||| || || |||||   |||||||||||||||| |||
seq2  AGGTGGAATTCTGAG-TCCAGCCCAGC--TGTCTACAGAGTGAGTTCCCA  95

seq1  GGACAGCCAGGACTAC-ACAGAGAAACCTGGTCTAAAAGGAAAAAAAAAA  146
      ||||||||| |||||| ||||||||||||||||||||| |||||||||||
seq2  GGACAGCCA-GACTACAACAGAGAAACCTGGTCTAAAA-GAAAAAAAAAA  143

seq1  AGATATTAGAGAGAAACCCTCAAACATGATAGAAGTGATAAAGCCATTTC  196
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGATATTAGAGAGAAACCCTC-AACATGATAGAAGTGATAAAGCCATTTC  192

seq1  ACAACACTGTTACCTCTGAATACATTAAAGAAAATGTAATGGTGAGAAAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTGTTACCTCTGAATACATTAAAGAAAATGTAATGGTGAGAAAC  242

seq1  ACTATGGAGATATTTCATGTAGTGAAGTATTTTCTTGTCACAGTAGTCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGAGATATTTCATGTAGTGAAGTATTTTCTTGTCACAGTAGTCTC  292

seq1  CATATACACACATACAAAAAATGCTGGAATGAAACCGTACAAATATAATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACACACATACAAAAAATGCTGGAATGAAACCGTACAAATATAATT  342

seq1  GACGTGATAAACCATTTTTACAACACAGTTATGCTTGAATACATCAAAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGATAAACCATTTTTACAACACAGTTATGCTTGAATACATCAAAGA  392

seq1  ACACATACTGAAGAGAAAATCTATGAATGTAAGCAATATGGTAACACCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACTGAAGAGAAAATCTATGAATGTAAGCAATATGGTAACACCAT  442

seq1  TTTTTATTCAGGTGCATTTCAACTAAGCAAAAGAATATATACTCTAGCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCAGGTGCATTTCAACTAAGCAAAAGAATATATACTCTAGCAA  492

seq1  AACCCTCCAAATGCCATCAGTGTGATGAAGCCTTTGTATGTCACAGTCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCCAAATGCCATCAGTGTGATGAAGCCTTTGTATGTCACAGTCAT  542

seq1  CTTCAAAGGCATGCAAAGAATCATTCTGAAGAGAAACCTTATGAATGTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGGCATGCAAAGAATCATTCTGAAGAGAAACCTTATGAATGTAT  592

seq1  TTAATATTTGAAGGCTTTGCACACTTCTGTAATCATCATCATGACAGTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTGAAGGCTTTGCACACTTCTGTAATCATCATCATGACAGTAT  642

seq1  TCGTGCTGGAGAGAAGCCCTGTGAATGCAAGCAATGTGGCAAACCCTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCTGGAGAGAAGCCCTGTGAATGCAAGCAATGTGGCAAACCCTTTT  692

seq1  ATCACCAAATGCCAAGAAGTACACATACTGTAGAGAAGCCTCATGAACGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAAATGCCAAGAAGTACACATACTGTAGAGAAGCCTCATGAACGG  742

seq1  ACTCACTGTGGTAAAGCCTTTGCAAGTCACTGCAGTCTCTGAGTACATAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGTGGTAAAGCCTTTGCAAGTCACTGCAGTCTCTGAGTACATAC  792

seq1  AGGGACACATTCTGGAGAGAAACCCAAAATATGTAATCAATGGGGGCTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACATTCTGGAGAGAAACCCAAAATATGTAATCAATGGGGGCTGG  842

seq1  AGAGATGGCTTAGCAGTTGAGAACACTGACTGTTCTTCTAGAAGTCCTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTTAGCAGTTGAGAACACTGACTGTTCTTCTAGAAGTCCTGA  892

seq1  GTTCAAATCCCAGCAAGCACATGGTGGCTCACAACCATCTGTAGCAAGAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATCCCAGCAAGCACATGGTGGCTCACAACCATCTGTAGCAAGAC  942

seq1  CAGATTACCGTTTCCGGTGTCTGAATACAGCTACAGTGTATCTACATATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTACCGTTTCCGGTGTCTGAATACAGCTACAGTGTATCTACATATG  992

seq1  ATAAATAAAATAAATCTTTAAAAAATGTAATCAATGTAATAAAACATTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAATAAATCTTTAAAAAATGTAATCAATGTAATAAAACATTTG  1042

seq1  TGTGTAACAGCAATAGTCTTTGAATATATAAAAGAACACATGCTGGTGAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACAGCAATAGTCTTTGAATATATAAAAGAACACATGCTGGTGAG  1092

seq1  AAAACCTATGTATGTTTGATGACTTGAAAGAATTC  1131
      |||||||||||||||||||||||||||||||||||
seq2  AAAACCTATGTATGTTTGATGACTTGAAAGAATTC  1127

seq1: chr7_50113124_50114255
seq2: B6Ng01-278C16.g_64_1183

seq1  GAATTCCTCTCACAGCACGATCAGTAGCACACAGAGCAAGACACACTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCACAGCACGATCAGTAGCACACAGAGCAAGACACACTAAC  50

seq1  CACTCAATCCTCCTCATCTACAGCATTGAATGAGCAACATGGTACCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAATCCTCCTCATCTACAGCATTGAATGAGCAACATGGTACCCAGA  100

seq1  AACACCCTCCTCCACTTCTGACTGGCAGGTCAGACTGGAGGCCCTGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTCCTCCACTTCTGACTGGCAGGTCAGACTGGAGGCCCTGATTG  150

seq1  GCCAACAAGTCTCGAGTGACATAAGCACCTCCCTTAAGGTTAGAGTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAAGTCTCGAGTGACATAAGCACCTCCCTTAAGGTTAGAGTGTGA  200

seq1  GGAAGTGGCACAGCATAGTGATTCCTGGCTTATGCTGCTGGTCCAGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGCACAGCATAGTGATTCCTGGCTTATGCTGCTGGTCCAGGGCT  250

seq1  AATTGTTTTTCAGATATGTAGGTTAAGACTGCCCTAAAGGGACAAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTTCAGATATGTAGGTTAAGACTGCCCTAAAGGGACAAGACAA  300

seq1  GGTGGTTCCTCTACCAGGCTTCTCTCTAGAGCTACACCTTTTGAGATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTCCTCTACCAGGCTTCTCTCTAGAGCTACACCTTTTGAGATCTG  350

seq1  GAAAGATTTGCATTTTACTTGTGCTGGTCCTCTAGCACCCTACCCTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTTGCATTTTACTTGTGCTGGTCCTCTAGCACCCTACCCTACTC  400

seq1  TTTTCCAGAACTTCCCCTTCTTCTTGCAAGGCTGAGAGCTTGCAAGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGAACTTCCCCTTCTTCTTGCAAGGCTGAGAGCTTGCAAGGCTT  450

seq1  GCTATTCAACTTGCAGTTTAATAATCAATCTGGCCCACAAGGAAAGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCAACTTGCAGTTTAATAATCAATCTGGCCCACAAGGAAAGGGTG  500

seq1  CTAAGAATATTAACAATTAAAGGGAGATTTTAGAAAACACTAAGATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATATTAACAATTAAAGGGAGATTTTAGAAAACACTAAGATTTTT  550

seq1  GTTCTGTGGTTTCATGGTTGGGTCAGGTAAATTGCAGCTTACTTTTCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGGTTTCATGGTTGGGTCAGGTAAATTGCAGCTTACTTTTCACC  600

seq1  TGGCAGGTATGAGACTTTACACAGCCCTGGGAGAAAAGGAGGAAGCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTATGAGACTTTACACAGCCCTGGGAGAAAAGGAGGAAGCAGGT  650

seq1  GATAAACACTGTGGAGCACTACTGTTAGCCAGCACCTCTCCCTCAGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACACTGTGGAGCACTACTGTTAGCCAGCACCTCTCCCTCAGTGGG  700

seq1  AAGGGGGAAACACAGCTGTATTAATAAGTCTATGTAGATGAACAGAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAAACACAGCTGTATTAATAAGTCTATGTAGATGAACAGAACTG  750

seq1  ATGGGACGGATCTCTCTGTGTATGGAGAAAGTGGATGTATTGGAATGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACGGATCTCTCTGTGTATGGAGAAAGTGGATGTATTGGAATGGCT  800

seq1  TGAAAGCTACTGTCTGCAAATGGACAGATGAAGAATACAGTAGTGCTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTACTGTCTGCAAATGGACAGATGAAGAATACAGTAGTGCTTCA  850

seq1  GTCCGTTTAGCTGAATGTCTTGACTGGTCTTCAGTATATACCAGAATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTTTAGCTGAATGTCTTGACTGGTCTTCAGTATATACCAGAATTAT  900

seq1  GAAGAA-GGAGGCTCTAACACCAGTTTAAAAAAATGTACTTGCTAGCCAG  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGGAGGCTCTAACACCAGTTTAAAAAAATGTACTTGCTAGCCAG  950

seq1  AAGTAGGATATGACGACAAGGAGAAAGAACTACAATCTTCAATGATCTTT  999
      ||||||||||||||||| ||||||||| ||||||||| ||||||||||||
seq2  AAGTAGGATATGACGAC-AGGAGAAAG-ACTACAATC-TCAATGATCTTT  997

seq1  ATAAATGTAATCTGCCACCAGAAGCT-GTGGCCTACATTAAAGA-TATCT  1047
      |||||||||||||||   |||||||| |||||||||| |||||| | |||
seq2  ATAAATGTAATCTGC--ACAGAAGCTGGTGGCCTACA-TAAAGATTTTCT  1044

seq1  CTTATCACTTCAAAAGATTCAAATTCAAAAAAGGGTTTACAACTAAAAAA  1097
      |||||||||   ||||||||||| |||||||  |||||||| || |||||
seq2  CTTATCACT--CAAAGATTCAAA-TCAAAAA--GGTTTACACCT-AAAAA  1088

seq1  GATATAATTAAGAAAAATCCCTTGTAATACTGAAT  1132
      ||| ||| |||||||| |||| ||| |||||||||
seq2  GAT-TAA-TAAGAAAATTCCC-TGTCATACTGAAT  1120