BAC Information

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BAC

Clone NameB6Ng01-278E17
Chromosome7 (Build37)
Map Location 122,664,574 - 122,811,080
singlet/doubletdoublet
Overlap geneSox6
Upstream genePde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278E17.bB6Ng01-278E17.g
ACCGA078579GA078580
length1,1321,110
definitionB6Ng01-278E17.b B6Ng01-278E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,809,947 - 122,811,080)(122,664,574 - 122,665,677)
sequence
gaattcagtggatcaaattcagtaaatctgaagtcactggaataaaggcc
cctcagggggggaaaaaaaacgtgtcaattttaaaggtctttcctaactg
aagaccattttgtgatagagccaaaggttaataaaatcagtagtgaatgt
agcaattttacagataagctattcacaacaagtgtagttacttgaataaa
aagctaattcagttctaaaatgccacatgcagtagcagtgaatagctgct
tttaggtgctttccagaggagggtaaagtacagaatcgcagcactcttct
ctcgccgcgtccccggccgcctgtaaatcgctgtgaatggggctgtgggc
tgacaggctctattaagacaaactgcctttctcatcggagagataaaata
aatcaggtgtttagtcaaattaaaatacttcagctggagcaggccccggg
gagcactgatccaccttactaatccgagagaaactcaagacagatgtggt
ttggggataaagatgaccccatggaagaaaaaaggaaagaaagaaaaaag
aaaggaaaagccgagctgcagctggcagctcggtctctgcagttggagga
tagatacagtgttgcagttggaggatagatacagcttaccgtggaggagc
aagcgtcaggcacacacaccctgtgtgtgccacacaggaaaggcaggcgc
actgacttggagaaaagctgtgtactgaagctttttactggctccctttc
tgtggtttatgaagctacctctggctttcagtggaaggcagaagaggcta
ttttctggcagtgcgtctgagagagtcattttaagatagtctaaagatgt
caaacagatgacgctaggcaaccgatgacctctgctggcccgctgagatg
gggcttatcccaggttcctatcttatttatttacttattatttactctaa
gttgatttggtcaatctcaaacatgacttaggtaagatttccccccacat
tattcttaagtagttgaagaagcatcttataaccccctgcttctctacac
tccctggttgtacttaggagttctgtatgcccttggcctgccttctttct
ttcagccatcttggagcatctaagtttctccg
gaattcccacttcctagcaggagcccagccctggctagaaggttattcta
ttgttcaactgatttacataccttaatttgcatttatctatcttttaata
ttaaatatatctacatataaacacttaaatatatttaattgcttttgtaa
aaattctgaaaaataatttcattttgtttaaaagtaaaaccaaaataaaa
gaagaaagggaggttattttagcaggatttagtagctggcgtgcctaatc
tgatataaagccaacaaggcagacattacatctttagagccagctgagga
gccacaggaacacacccataagacagttgtaatatgtatgccctatggtc
ttggtggcagaagaaaaaggaatgcaaaaagaagtcaacaacagattttg
tcaagaagaaatgcttcagttggcttaattataatgccgtctaggaagag
aatggcgttttaggaaaaagtataagatttggaattctacattcagaaaa
ctcaaagaagctgtacagcatccaaatagaaaatgcacactgagtaggag
atgaagttgatcagggagagagttacagcacagccggtcaggcaagctat
gtcgatgcttgctgttcaccatgcaggtggcaagatcctttgcgtgctta
aaaatggaagtaagatctggctaccacatgatttctcgaactaaggccta
aatttagttctgagatgcttagtcaaggtaacaggaatgcatctctactt
gtataggtcatctattaatgcaggagaatagatagttttagataatgctg
ttaatgtttagcttagaatatgtagtaataatgtctttaactgttatatt
ttactaatttgttttcctttctttccttcttctttttctttttgcaaaga
atttcacacatatactctctcatctagtcctttatctgagagtttattac
tctaccccccacctcagtcttctgtctttcttggaaaagcactcacaaca
tacaactttttatttaatcactataatccatggcaacagcattggcttac
ccatttttatgattgggaggtgaatacagtattcatatttttagagttat
gaaatttatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_122809947_122811080
seq2: B6Ng01-278E17.b_42_1173 (reverse)

seq1  CGGAGAAACTAGAATGCT-CAAGATGGCTGAAAGAA--GAGGCAGCCAAA  47
      ||||||||||   ||||| |||||||||||||||||   |||||| | ||
seq2  CGGAGAAACTTAGATGCTCCAAGATGGCTGAAAGAAAGAAGGCAGGCCAA  50

seq1  GGGGCATACAGGACTCCTAAGTACAACCAGGGAGTGTTAGAGAAGCAGGG  97
       |||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  -GGGCATACAGAACTCCTAAGTACAACCAGGGAGTG-TAGAGAAGCAGGG  98

seq1  GGTTATAAGATGCTTCTTCAACTAACTTAAGAAT-ATGT-GGGGGAAATC  145
      ||||||||||||||||||||||| |||||||||| |||| ||||||||||
seq2  GGTTATAAGATGCTTCTTCAACT-ACTTAAGAATAATGTGGGGGGAAATC  147

seq1  TTACCCTAAGTCATGTTTTGAGATTTGACCAAATCAACTTAGAGTAAATA  195
      ||| ||||||||||| ||||||| ||||||||||||||||||||||||| 
seq2  TTA-CCTAAGTCATG-TTTGAGA-TTGACCAAATCAACTTAGAGTAAAT-  193

seq1  AATAAGTAAATAAATAAGATAGGAACCTGGGATAAGCCCCATCTCAGCGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAAATAAATAAGATAGGAACCTGGGATAAGCCCCATCTCAGCGG  243

seq1  GCCAGCAGAGGTCATCGGTTGCCTAGCGTCATCTGTTTGACATCTTTAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAGAGGTCATCGGTTGCCTAGCGTCATCTGTTTGACATCTTTAGA  293

seq1  CTATCTTAAAATGACTCTCTCAGACGCACTGCCAGAAAATAGCCTCTTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTAAAATGACTCTCTCAGACGCACTGCCAGAAAATAGCCTCTTCT  343

seq1  GCCTTCCACTGAAAGCCAGAGGTAGCTTCATAAACCACAGAAAGGGAGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCACTGAAAGCCAGAGGTAGCTTCATAAACCACAGAAAGGGAGCC  393

seq1  AGTAAAAAGCTTCAGTACACAGCTTTTCTCCAAGTCAGTGCGCCTGCCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGCTTCAGTACACAGCTTTTCTCCAAGTCAGTGCGCCTGCCTT  443

seq1  TCCTGTGTGGCACACACAGGGTGTGTGTGCCTGACGCTTGCTCCTCCACG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTGGCACACACAGGGTGTGTGTGCCTGACGCTTGCTCCTCCACG  493

seq1  GTAAGCTGTATCTATCCTCCAACTGCAACACTGTATCTATCCTCCAACTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTGTATCTATCCTCCAACTGCAACACTGTATCTATCCTCCAACTG  543

seq1  CAGAGACCGAGCTGCCAGCTGCAGCTCGGCTTTTCCTTTCTTTTTTCTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACCGAGCTGCCAGCTGCAGCTCGGCTTTTCCTTTCTTTTTTCTTT  593

seq1  CTTTCCTTTTTTCTTCCATGGGGTCATCTTTATCCCCAAACCACATCTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTTTTCTTCCATGGGGTCATCTTTATCCCCAAACCACATCTGT  643

seq1  CTTGAGTTTCTCTCGGATTAGTAAGGTGGATCAGTGCTCCCCGGGGCCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTTCTCTCGGATTAGTAAGGTGGATCAGTGCTCCCCGGGGCCTG  693

seq1  CTCCAGCTGAAGTATTTTAATTTGACTAAACACCTGATTTATTTTATCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTGAAGTATTTTAATTTGACTAAACACCTGATTTATTTTATCTC  743

seq1  TCCGATGAGAAAGGCAGTTTGTCTTAATAGAGCCTGTCAGCCCACAGCCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATGAGAAAGGCAGTTTGTCTTAATAGAGCCTGTCAGCCCACAGCCC  793

seq1  CATTCACAGCGATTTACAGGCGGCCGGGGACGCGGCGAGAGAAGAGTGCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAGCGATTTACAGGCGGCCGGGGACGCGGCGAGAGAAGAGTGCT  843

seq1  GCGATTCTGTACTTTACCCTCCTCTGGAAAGCACCTAAAAGCAGCTATTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTCTGTACTTTACCCTCCTCTGGAAAGCACCTAAAAGCAGCTATTC  893

seq1  ACTGCTACTGCATGTGGCATTTTAGAACTGAATTAGCTTTTTATTCAAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTACTGCATGTGGCATTTTAGAACTGAATTAGCTTTTTATTCAAGT  943

seq1  AACTACACTTGTTGTGAATAGCTTATCTGTAAAATTGCTACATTCACTAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACACTTGTTGTGAATAGCTTATCTGTAAAATTGCTACATTCACTAC  993

seq1  TGATTTTATTAACCTTTGGCTCTATCACAAAATGGTCTTCAGTTAGGAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTATTAACCTTTGGCTCTATCACAAAATGGTCTTCAGTTAGGAAA  1043

seq1  GACCTTTAAAATTGACACGTTTTTTTTCCCCCCCTGAGGGGCCTTTATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTAAAATTGACACGTTTTTTTTCCCCCCCTGAGGGGCCTTTATTC  1093

seq1  CAGTGACTTCAGATTTACTGAATTTGATCCACTGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTTCAGATTTACTGAATTTGATCCACTGAATTC  1132

seq1: chr7_122664574_122665677
seq2: B6Ng01-278E17.g_63_1172

seq1  GAATTCCCACTTCCTAGCAGGAGCCCAGCCCTGGCTAGAAGGTTATTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTTCCTAGCAGGAGCCCAGCCCTGGCTAGAAGGTTATTCTA  50

seq1  TTGTTCAACTGATTTACATACCTTAATTTGCATTTATCTATCTTTTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAACTGATTTACATACCTTAATTTGCATTTATCTATCTTTTAATA  100

seq1  TTAAATATATCTACATATAAACACTTAAATATATTTAATTGCTTTTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATATCTACATATAAACACTTAAATATATTTAATTGCTTTTGTAA  150

seq1  AAATTCTGAAAAATAATTTCATTTTGTTTAAAAGTAAAACCAAAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGAAAAATAATTTCATTTTGTTTAAAAGTAAAACCAAAATAAAA  200

seq1  GAAGAAAGGGAGGTTATTTTAGCAGGATTTAGTAGCTGGCGTGCCTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGGAGGTTATTTTAGCAGGATTTAGTAGCTGGCGTGCCTAATC  250

seq1  TGATATAAAGCCAACAAGGCAGACATTACATCTTTAGAGCCAGCTGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAAAGCCAACAAGGCAGACATTACATCTTTAGAGCCAGCTGAGGA  300

seq1  GCCACAGGAACACACCCATAAGACAGTTGTAATATGTATGCCCTATGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGGAACACACCCATAAGACAGTTGTAATATGTATGCCCTATGGTC  350

seq1  TTGGTGGCAGAAGAAAAAGGAATGCAAAAAGAAGTCAACAACAGATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCAGAAGAAAAAGGAATGCAAAAAGAAGTCAACAACAGATTTTG  400

seq1  TCAAGAAGAAATGCTTCAGTTGGCTTAATTATAATGCCGTCTAGGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGAAATGCTTCAGTTGGCTTAATTATAATGCCGTCTAGGAAGAG  450

seq1  AATGGCGTTTTAGGAAAAAGTATAAGATTTGGAATTCTACATTCAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCGTTTTAGGAAAAAGTATAAGATTTGGAATTCTACATTCAGAAAA  500

seq1  CTCAAAGAAGCTGTACAGCATCCAAATAGAAAATGCACACTGAGTAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAAGCTGTACAGCATCCAAATAGAAAATGCACACTGAGTAGGAG  550

seq1  ATGAAGTTGATCAGGGAGAGAGTTACAGCACAGCCGGTCAGGCAAGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTGATCAGGGAGAGAGTTACAGCACAGCCGGTCAGGCAAGCTAT  600

seq1  GTCGATGCTTGCTGTTCACCATGCAGGTGGCAAGATCCTTTGCGTGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGATGCTTGCTGTTCACCATGCAGGTGGCAAGATCCTTTGCGTGCTTA  650

seq1  AAAATGGAAGTAAGATCTGGCTACCACATGATTTCTCGAACTAAGGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAAGTAAGATCTGGCTACCACATGATTTCTCGAACTAAGGCCTA  700

seq1  AATTTAGTTCTGAGATGCTTAGTCAAGGTAACAGGAATGCATCTCTACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGTTCTGAGATGCTTAGTCAAGGTAACAGGAATGCATCTCTACTT  750

seq1  GTATAGGTCATCTATTAATGCAGGAGAATAGATAGTTTTAGATAATGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGTCATCTATTAATGCAGGAGAATAGATAGTTTTAGATAATGCTG  800

seq1  TTAATGTTTAGCTTAGAATATGTAGTAATAATGTCTTTAACTGTTATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTTAGCTTAGAATATGTAGTAATAATGTCTTTAACTGTTATATT  850

seq1  TTACTAATTTGTTTTCCTTTCTTTCCTTCTTCTTTTTCTTTTTGCAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATTTGTTTTCCTTTCTTTCCTTCTTCTTTTTCTTTTTGCAAAGA  900

seq1  A-TTCACACATATACTCTCTCATCTAGTCCTTTATCTGAGAGTTTATTAC  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACACATATACTCTCTCATCTAGTCCTTTATCTGAGAGTTTATTAC  950

seq1  TCTA-CCCCCACCTCAGTC-TCTGTCTTTC-TGGAAAAGCACTCAC-ACA  995
      |||| |||||||||||||| |||||||||| ||||||||||||||| |||
seq2  TCTACCCCCCACCTCAGTCTTCTGTCTTTCTTGGAAAAGCACTCACAACA  1000

seq1  TACAACCTTTTATTTAATCACTATAATCCCATGGCACCAGCATTTGCTTA  1045
      |||||| |||||||||||||||||||| |||||||| ||||||| |||||
seq2  TACAACTTTTTATTTAATCACTATAAT-CCATGGCAACAGCATTGGCTTA  1049

seq1  CCCATTTTATGGATTGGGAGGTG-ATACAGTAATCATA-TTTTAGAGTTA  1093
      ||||||||   |||||||||||| |||||||| ||||| |||||||||||
seq2  CCCATTTTTATGATTGGGAGGTGAATACAGTATTCATATTTTTAGAGTTA  1099

seq1  TGAAATTTATC  1104
      |||||||||||
seq2  TGAAATTTATC  1110