BAC Information

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BAC

Clone NameB6Ng01-278M14
Chromosome7 (Build37)
Map Location 16,800,341 - 16,949,174
singlet/doubletdoublet
Overlap geneDhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1
Upstream geneLOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2
Downstream geneBC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278M14.bB6Ng01-278M14.g
ACCGA078936GA078937
length1,1401,053
definitionB6Ng01-278M14.b B6Ng01-278M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,800,341 - 16,801,475)(16,948,123 - 16,949,174)
sequence
gaattcattgagagcacctgtggcctataaacctgaaagcatccccctct
ggcctttcacagaaaatctgccgactcttggctaagatcctgggtttaca
ggctacttggccatctgatggccatgtgaccccacagaagcccactggcc
tgggactgggggataaagccagcgtagctacacttgcttcctggcctaga
gactcccctgctttgcagactgtactcagtaccttgtcctggtcagacac
agagagggcgctgtgcagcggcagcaccacccagcgctgggtgaggctgg
cataagcctgggctgcgtccagcaccgtggtgatctccgccatgccactg
aggaagacaagaaggtccccccgctcctcggggggatacttattgtcgat
ggcctccagcaccctcaggaagggccgtgggtccagcttctctgacttgg
atgctgtctggtctgcctcctgcggctggtagactacctgtgagagagca
gagtgcagtcacatgctgtctctctggagcagcaagcaggcaggggctac
gggctcacggggggtggtgggactggttggtaggtggcacactcaaggtg
ggtaacttttagaggagatagtgaaattaaagaaaaaaaactgaggtgct
gacagtgctagaggttttaaaattccggtgccgactacaaagctgtgtta
actaaatagcatgcatgctcttagggaatggtaccctgaaccagaagagc
tgagccggagagggccctgcccagcacttcttaggaagcatccacacggg
catgcagacccacagacgactagcaacactgaggtcctgccctgcatttg
gctacaccaacaagcacagagcctcacttacacaggcaacatctggacag
ggtggacaccatctgacatgtacatagaagatgcaactaaagattctatt
gatggcagaccatccagcccaaaacgtcaagcctgcagcctgagagagcc
ttgccctgtaagatggtagagctgtgagaagcctgaggccctgagactgt
gttacacctgaccagtcttcatcttggagagcttgtaagtcctaaagaaa
atattgcctctctcccttgtgcagccctaagtgcgggtgg
gaattccaaagataagaaacttgctcagagctgagcagtgggggtgcacg
ccttgaatcccagcacttgggaggcagaggcaggtggatttctgagtttg
aggccagcctggtctacaaagtgagttccaggaaagccagggctatacag
agaaaccctgtcttaaaaaaaaaaaaaaaccccaaaaacaaaacaacaac
aaaaaaaaaaaccaaacaaacaaaaaatagattgcttggtttagagctgc
tgtcgccaactttttcaggtgtcgaatgacttgacaggctggctgttgaa
aaacacagatatttacattatgactagtaacagtagccaaattatagttc
agaagtagcaaagtagtagttatatggccagacagtcatgtgcacacctt
taatctcagcactggggaagcagaggcaggcagatcccttgagttcaaca
acagcctggtccacagagctgagatccaggtctgccaaggctcctcagag
aaaccctgtcttgaaaacagagagggagagggagagagagagagaatatt
ttctggctggctggcacagtctgaggaaggcttgcagcattaggaaggtt
gatgacttagagacaggaaacgcactggtctatacagagtgtttggttgg
atactggggtcagggtttccagggaagatggttggctgagatggagaatg
atgtcttgccttatggggaagtttttcactttcaatgacatgagcacaga
gaatgaaccctatgtgtgtctgtctgtccccagccctccattctttcctt
cttttcctttctcttctttcctctcttcatgactgaaaacaggcagccca
gctgagtttagacacagtctgtagcccaaagaggccctgtgttttcagtc
tttcctgctttagaatgaatgctgagtgcacagcatactttaccactgtt
atctggatacacgtggaagtatgcacatatttttttatttcatgtagagg
aattatggcacatcctgttctcagtttgcttgctaatctggcacactttt
ctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16800341_16801475
seq2: B6Ng01-278M14.b_45_1184

seq1  GAATTCATTGAGAGCACCTGTGGCCTATAAACCTGAAAGCATCCCCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAGAGCACCTGTGGCCTATAAACCTGAAAGCATCCCCCTCT  50

seq1  GGCCTTTCACAGAAAATCTGCCGACTCTTGGCTAAGATCCTGGGTTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCACAGAAAATCTGCCGACTCTTGGCTAAGATCCTGGGTTTACA  100

seq1  GGCTACTTGGCCATCTGATGGCCATGTGACCCCACAGAAGCCCACTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTTGGCCATCTGATGGCCATGTGACCCCACAGAAGCCCACTGGCC  150

seq1  TGGGACTGGGGGATAAAGCCAGCGTAGCTACACTTGCTTCCTGGCCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTGGGGGATAAAGCCAGCGTAGCTACACTTGCTTCCTGGCCTAGA  200

seq1  GACTCCCCTGCTTTGCAGACTGTACTCAGTACCTTGTCCTGGTCAGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCCTGCTTTGCAGACTGTACTCAGTACCTTGTCCTGGTCAGACAC  250

seq1  AGAGAGGGCGCTGTGCAGCGGCAGCACCACCCAGCGCTGGGTGAGGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGCGCTGTGCAGCGGCAGCACCACCCAGCGCTGGGTGAGGCTGG  300

seq1  CATAAGCCTGGGCTGCGTCCAGCACCGTGGTGATCTCCGCCATGCCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCCTGGGCTGCGTCCAGCACCGTGGTGATCTCCGCCATGCCACTG  350

seq1  AGGAAGACAAGAAGGTCCCCCCGCTCCTCGGGGGGATACTTATTGTCGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACAAGAAGGTCCCCCCGCTCCTCGGGGGGATACTTATTGTCGAT  400

seq1  GGCCTCCAGCACCCTCAGGAAGGGCCGTGGGTCCAGCTTCTCTGACTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCAGCACCCTCAGGAAGGGCCGTGGGTCCAGCTTCTCTGACTTGG  450

seq1  ATGCTGTCTGGTCTGCCTCCTGCGGCTGGTAGACTACCTGTGAGAGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCTGGTCTGCCTCCTGCGGCTGGTAGACTACCTGTGAGAGAGCA  500

seq1  GAGTGCAGTCACATGCTGTCTCTCTGGAGCAGCAAGCAGGCAGGGGCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGTCACATGCTGTCTCTCTGGAGCAGCAAGCAGGCAGGGGCTAC  550

seq1  GGGCTCACGGGGGGTGGTGGGACTGGTTGGTAGGTGGCACACTCAAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCACGGGGGGTGGTGGGACTGGTTGGTAGGTGGCACACTCAAGGTG  600

seq1  GGTAACTTTTAGAGGAGATAGTGAAATTAAAGAAAAAAAACTGAGGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTTTTAGAGGAGATAGTGAAATTAAAGAAAAAAAACTGAGGTGCT  650

seq1  GACAGTGCTAGAGGTTTTAAAATTCCGGTGCCGACTACAAAGCTGTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGCTAGAGGTTTTAAAATTCCGGTGCCGACTACAAAGCTGTGTTA  700

seq1  ACTAAATAGCATGCATGCTCTTAGGGAATGGTACCCTGAACCAGAAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATAGCATGCATGCTCTTAGGGAATGGTACCCTGAACCAGAAGAGC  750

seq1  TGAGCCGGAGAGGGCCCTGCCCAGCACTTCTTAGGAAGCATCCACACGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCGGAGAGGGCCCTGCCCAGCACTTCTTAGGAAGCATCCACACGGG  800

seq1  CATGCAGACCCACAGACGACTAGCAACACTGAGGTCCTGCCCTGCATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGACCCACAGACGACTAGCAACACTGAGGTCCTGCCCTGCATTTG  850

seq1  GCTACACCAACAAGCACAGAGCCTCAC-TACACAGGCAACATCTGGACAG  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTACACCAACAAGCACAGAGCCTCACTTACACAGGCAACATCTGGACAG  900

seq1  GGTGGACA-CATCTGACATGTACATAG-AGATGCAACTAAAGATTCTA-T  946
      |||||||| |||||||||||||||||| |||||||||||||||||||| |
seq2  GGTGGACACCATCTGACATGTACATAGAAGATGCAACTAAAGATTCTATT  950

seq1  GATGGCAGACCATCCAGCCCAAAACGTCAAGCCTGCAGCCTGAGAGAGCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAGACCATCCAGCCCAAAACGTCAAGCCTGCAGCCTGAGAGAGCC  1000

seq1  CTGCCCTGTAAGATGGTAGAGCTGTGAGAAGCCTGAGGCCCTGAAGGACT  1046
       |||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TTGCCCTGTAAGATGGTAGAGCTGTGAGAAGCCTGAGGCCCTGA--GACT  1048

seq1  GTG-TACAACTGAGCAGTCTTTCCATCTGGAAGAGC-TGTAGTTCCTAAA  1094
      ||| |||| |||| |||||||  ||||| | ||||| ||||  |||||||
seq2  GTGTTACACCTGACCAGTCTT--CATCTTGGAGAGCTTGTAAGTCCTAAA  1096

seq1  AGAAAAATATTGC--CTCTCCCTTG-GCAGACCCTAGT--GGGTGG  1135
         ||||||||||  |||||||||| |||| ||  |||  ||||||
seq2  --GAAAATATTGCCTCTCTCCCTTGTGCAGCCCTAAGTGCGGGTGG  1140

seq1: chr7_16948123_16949174
seq2: B6Ng01-278M14.g_67_1119 (reverse)

seq1  AAGAAAAGTGTGGCAGATTAGCAAGCCAAACTGAGAACAAGGATGTGGCA  50
      |||||||||||| |||||||||||| |||||||||||| |||||||| ||
seq2  AAGAAAAGTGTGCCAGATTAGCAAG-CAAACTGAGAAC-AGGATGTGCCA  48

seq1  T-ATTTCTCTACATGAAATAAAAAATTATGTGCATACTTCCACGTGTAT-  98
      | ||| ||||||||||||||||||| ||||||||||||||||||||||| 
seq2  TAATTCCTCTACATGAAATAAAAAAATATGTGCATACTTCCACGTGTATC  98

seq1  CAGAT-ACAGTGGTAAAGTATGCTGTGCACTCAGCATTCATTCTAAAGCA  147
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAACAGTGGTAAAGTATGCTGTGCACTCAGCATTCATTCTAAAGCA  148

seq1  GGAAAGACTGAAAACACAGGGCCTCTTTGGGCTACAGACTGTGTCTAAAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACTGAAAACACAGGGCCTCTTTGGGCTACAGACTGTGTCTAAAC  198

seq1  TCAGCTGGGCTGCCTGTTTTCAGTCATGAAGAGAGGAAAGAAGAGAAAGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGGCTGCCTGTTTTCAGTCATGAAGAGAGGAAAGAAGAGAAAGG  248

seq1  AAAAGAAGGAAAGAATGGAGGGCTGGGGACAGACAGACACACATAGGGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGAAAGAATGGAGGGCTGGGGACAGACAGACACACATAGGGTT  298

seq1  CATTCTCTGTGCTCATGTCATTGAAAGTGAAAAACTTCCCCATAAGGCAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTGTGCTCATGTCATTGAAAGTGAAAAACTTCCCCATAAGGCAA  348

seq1  GACATCATTCTCCATCTCAGCCAACCATCTTCCCTGGAAACCCTGACCCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCATTCTCCATCTCAGCCAACCATCTTCCCTGGAAACCCTGACCCC  398

seq1  AGTATCCAACCAAACACTCTGTATAGACCAGTGCGTTTCCTGTCTCTAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCAACCAAACACTCTGTATAGACCAGTGCGTTTCCTGTCTCTAAG  448

seq1  TCATCAACCTTCCTAATGCTGCAAGCCTTCCTCAGACTGTGCCAGCCAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAACCTTCCTAATGCTGCAAGCCTTCCTCAGACTGTGCCAGCCAGC  498

seq1  CAGAAAATATTCTCTCTCTCTCTCCCTCTCCCTCTCTGTTTTCAAGACAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATATTCTCTCTCTCTCTCCCTCTCCCTCTCTGTTTTCAAGACAG  548

seq1  GGTTTCTCTGAGGAGCCTTGGCAGACCTGGATCTCAGCTCTGTGGACCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGAGGAGCCTTGGCAGACCTGGATCTCAGCTCTGTGGACCAG  598

seq1  GCTGTTGTTGAACTCAAGGGATCTGCCTGCCTCTGCTTCCCCAGTGCTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTTGAACTCAAGGGATCTGCCTGCCTCTGCTTCCCCAGTGCTGA  648

seq1  GATTAAAGGTGTGCACATGACTGTCTGGCCATATAACTACTACTTTGCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTGTGCACATGACTGTCTGGCCATATAACTACTACTTTGCTA  698

seq1  CTTCTGAACTATAATTTGGCTACTGTTACTAGTCATAATGTAAATATCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAACTATAATTTGGCTACTGTTACTAGTCATAATGTAAATATCTG  748

seq1  TGTTTTTCAACAGCCAGCCTGTCAAGTCATTCGACACCTGAAAAAGTTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCAACAGCCAGCCTGTCAAGTCATTCGACACCTGAAAAAGTTGG  798

seq1  CGACAGCAGCTCTAAACCAAGCAATCTATTTTTTGTTTGTTTGGTTTTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGCAGCTCTAAACCAAGCAATCTATTTTTTGTTTGTTTGGTTTTTT  848

seq1  TTTTTGTTGTTGTTTTGTTTTTGGGGTTTTTTTTTTTTTTTAAGACAGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGTTGTTTTGTTTTTGGGGTTTTTTTTTTTTTTTAAGACAGGG  898

seq1  TTTCTCTGTATAGCCCTGGCTTTCCTGGAACTCACTTTGTAGACCAGGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTATAGCCCTGGCTTTCCTGGAACTCACTTTGTAGACCAGGCT  948

seq1  GGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATT  998

seq1  CAAGGCGTGCACCCCCACTGCTCAGCTCTGAGCAAGTTTCTTATCTTTGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCGTGCACCCCCACTGCTCAGCTCTGAGCAAGTTTCTTATCTTTGG  1048

seq1  AATTC  1052
      |||||
seq2  AATTC  1053