BAC Information

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BAC

Clone NameB6Ng01-279O10
Chromosome7 (Build37)
Map Location 54,676,805 - 54,677,411
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217
Downstream geneLOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314, Mrgprc3-ps, EG435977, EG619792, Mrgprc7-ps, Mrgpra18-ps, EG435978, Mrgprc2-ps, Mrgpra4, Mrgprx1, Mrgprb7-ps, Mrgprb12-ps, EG270335, Mrgprb5, Mrgprb4, Mrgprb13, Mrgprb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279O10.bB6Ng01-279O10.g
ACCGA079763GA079764
length979910
definitionB6Ng01-279O10.b B6Ng01-279O10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaatgtagttgtaatatatgcttccctgatggatatggatatt
gaccacactttcacaaccattcttcatttgaatccgtttgttctattcat
ttgtccattgtcttagatacttttctgttgctgtgacaaaacatcatgac
cacagaacttatattaagcatttaattgggcttgcagtttcagaaagtta
atgactgggatggaagagcagaggcatggtagtaagaataggtgataggt
cacatctttaagcacaagtatgagacagagagagctcaaaatggtgtctt
ttgaaacctcagaacctgtttacatagtggattaagttgatggatttcca
tctattgaattatccctgcacccctgggatgcagcctacttgatcatggt
gaatgatcattttgatgtgttttttggatttggtttgtgagaatctaatg
agtatttttgcatcgatattcataagggaaatttgtctgaagttctcctt
tcttgagtctttgtgtggtataggtatcagtgttactgtggtttcataga
acaaataaggtagtgctccttctgtttctattttgtggaatcgtttgaga
agtattggtgttaggtctttgaaggtctgatagaattttgtactaagcct
atctggcacttttttttttttcggttgggagacttattaatgaccgattc
tatttccttcgggttatgggactgtttagatgttttgtctgatactgatt
taacttggtacctggtatgtgtctagaaaatcacccatttcatctagatt
ttccagttttgttgagtataggctcttgtagtaagatctgatgatttttt
gaatttcctcagtttttggttatgtctcccttttcatttctgatttgtta
atttggatactgtctctgtgccctctagttgtttgcctaagggtttatct
atcttgttgattttctctagaaccagctc
gaattcatgaaatacttaggcaagtggatagaaatagaaaatatcatcct
gagtgaggtaacccaatcacaaaagaacacacatggtatgtactcactgg
taagtggaatctagcccaaaagctgcaagtaaccagaataaaattcacag
acaacatgaacttcaacaggaaggaagaccaaagtgtgggtgttttggtc
cttcttagaaggagaaccaaatacgcacaaaagcaaatatggagataacg
tgtagaacaaacattaaaggaaaggtcacccagagaatgttccccctggg
gattcatcccatatacagttaccaaactcagacgctattgtggatgcaaa
aagtgcatgctgacaggaacctaatgtagatgtttcctaagaggccatgc
cagagccttacaaatgcagaggccaatgttagcagccaaccattagactg
agcacagggtccctaacagaggagttagagaaaggactgagggagtggaa
ggggtttgcagccccataagatgaaaaaaatataaactaacaagaccctc
ccccacccaaactcccagactcccagggactacaaaggagtatatgtggc
tccagatgcatatgtagcagatgatagtcatgtcatgcatggatggaaga
agatgtccttgaacctatgaatgttctatagatgcctcagtgtaagggaa
tcgatggcagaaaggtggaagtgggtgtctgggttgacgaacaccctcat
agaagcagggggagggaggatgagatgggggtttccgggaggaaataaca
tttgaatttaaataagaaaatatccaatacataaattaaacacactagtc
cacagaccgaaacaaacaaacagacttaaagtagtggtagttttagaggc
tgaatcgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_54676805_54677411
seq2: B6Ng01-279O10.b_47_653

seq1  GAATTCTCAATGTAGTTGTAATATATGCTTCCCTGATGGATATGGATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATGTAGTTGTAATATATGCTTCCCTGATGGATATGGATATT  50

seq1  GACCACACTTTCACAACCATTCTTCATTTGAATCCGTTTGTTCTATTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACACTTTCACAACCATTCTTCATTTGAATCCGTTTGTTCTATTCAT  100

seq1  TTGTCCATTGTCTTAGATACTTTTCTGTTGCTGTGACAAAACATCATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATTGTCTTAGATACTTTTCTGTTGCTGTGACAAAACATCATGAC  150

seq1  CACAGAACTTATATTAAGCATTTAATTGGGCTTGCAGTTTCAGAAAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACTTATATTAAGCATTTAATTGGGCTTGCAGTTTCAGAAAGTTA  200

seq1  ATGACTGGGATGGAAGAGCAGAGGCATGGTAGTAAGAATAGGTGATAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGGATGGAAGAGCAGAGGCATGGTAGTAAGAATAGGTGATAGGT  250

seq1  CACATCTTTAAGCACAAGTATGAGACAGAGAGAGCTCAAAATGGTGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTTAAGCACAAGTATGAGACAGAGAGAGCTCAAAATGGTGTCTT  300

seq1  TTGAAACCTCAGAACCTGTTTACATAGTGGATTAAGTTGATGGATTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACCTCAGAACCTGTTTACATAGTGGATTAAGTTGATGGATTTCCA  350

seq1  TCTATTGAATTATCCCTGCACCCCTGGGATGCAGCCTACTTGATCATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGAATTATCCCTGCACCCCTGGGATGCAGCCTACTTGATCATGGT  400

seq1  GAATGATCATTTTGATGTGTTTTTTGGATTTGGTTTGTGAGAATCTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATCATTTTGATGTGTTTTTTGGATTTGGTTTGTGAGAATCTAATG  450

seq1  AGTATTTTTGCATCGATATTCATAAGGGAAATTTGTCTGAAGTTCTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTGCATCGATATTCATAAGGGAAATTTGTCTGAAGTTCTCCTT  500

seq1  TCTTGAGTCTTTGTGTGGTATAGGTATCAGTGTTACTGTGGTTTCATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTCTTTGTGTGGTATAGGTATCAGTGTTACTGTGGTTTCATAGA  550

seq1  ACAAATAAGGTAGTGCTCCTTCTGTTTCTATTTTGTGGAATCGTTTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAGGTAGTGCTCCTTCTGTTTCTATTTTGTGGAATCGTTTGAGA  600

seq1  AGTATTG  607
      |||||||
seq2  AGTATTG  607