BAC Information

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BAC

Clone NameB6Ng01-280F01
Chromosome7 (Build37)17 (Build37)
Map Location 133,321,307 - 133,322,48529,501,214 - 29,501,465
singlet/doubletsingletsinglet
Overlap geneXpo6
Upstream geneLOC670828, 4933440M02Rik, LOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l
Downstream geneSbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280F01.bB6Ng01-280F01.g
ACCGA080073GA080074
length1,184742
definitionB6Ng01-280F01.b B6Ng01-280F01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(133,321,307 - 133,322,485)(29,501,214 - 29,501,465)
sequence
gaattctcatcagagtacaaagtaacttaacaaagaaaagacaagagcct
ttggacaaagttacttatacaagaaagatctaaataagtgttcacctcag
agaaatacaaatttaaaatgttagaggctactacacaaccaccagaatag
caaagttcgactcactgggctgaagacacagctcaagcatttaagaacac
tacgaccatctgtaactccagtcccaagacagccaatgccttcttctgac
cctttcagacaccagacatgcacatggtgcagacaagcacacaggcaaaa
cacccacacacagaaaaataagtataggacgacatgaatgaatgagtctt
gcagcaacaacaaaggatctcataaacataaatgaacaaatgaaagatgt
caaaacacaccctttcactatttgttttacacacacacacacacacacac
acacctggggcaatgttgctctgtgtgaccctggttgatttggaactctc
tagtagaccaggctggcctcagactcagagatccacatgcctctctgcct
cctgagtgctggaactcaagatatgtaacactatgcccaacatgctttat
actaaaaacttaaacaacactgagaatgagttgtgtgtgacagtcagaac
ggtggtcactttggggaagaattaccttggatctaagaatgttctactct
tggttggagtgtcccatgctgtaacagctataaattgtccaagaaaatgt
acatgtgctttgagctttcaaactgcatcttcaaaatttagaccctgagt
ttcaatagtattttcatcagttagcacaactactcactacagtgtaaaga
gacacctacagtttccacctgagtcccactattgcctatatatccaaagc
agccaccacagcaaagtcatatattgctgtttcatttgcctgtgcctccc
caagactcacctggctaaccccaacagaaaagggcacacacacttaaaat
tctttggggcaaaatgggatgatgaactatgtctgtcctagatcctctta
ggagagccatgcatataccctagaacaacctacatttttcttgcctgaca
gatgtaatggggtacacaggctggcctgcccttgaattcctgcggcctgt
ctattctgttctggatagcagttcaaagactgtg
gaattcaggaccgctgcttgctccagtcaaccctgctcactctggcctaa
agatttgtttattattatgtctaaatacactgtagctgtcttcagacgca
ccagaagagggagttagatctcattacagatggttgtgagccaccatgtg
attgctgggatttgaactcaggacctccggaagagcagtcagtgctttta
accactgagccatctctccagcccccaaatacattttttttttaaagaga
aatttgaaaacagctatctttcatggctggatattttgcaatgctctccc
cagaagaaatgagttattcaatgaaagtttcagttccagcatgaaataca
tctttatgaattattggagagagtctcccccaaataacataagctattat
catcattcttattgcccaacagaactaaatagtaagatccgattgctgct
gtcaagtggtggcggcacaagcctttaattccagcactcaagaggtagag
gtagacagatctctgaattcaaggctagcctggtctccagagtgagttcc
aggacagccagagctacacagagaaaccctgtcttgaaaaaaacatcctt
ttgttgaccaggcatggtggtgcacacctttcaacccagcattaaggaag
cagagaccagtggatctttctgagtttgaggccagcctggtttacaaagt
gagtctgatgacagccgaggctatatagttaagatcctgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_133321307_133322485
seq2: B6Ng01-280F01.b_45_1228

seq1  GAATTCTCATCAGAGTACAAAGTAACTTAACAAAGAAAAGACAAGAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCAGAGTACAAAGTAACTTAACAAAGAAAAGACAAGAGCCT  50

seq1  TTGGACAAAGTTACTTATACAAGAAAGATCTAAATAAGTGTTCACCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAAAGTTACTTATACAAGAAAGATCTAAATAAGTGTTCACCTCAG  100

seq1  AGAAATACAAATTTAAAATGTTAGAGGCTACTACACAACCACCAGAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACAAATTTAAAATGTTAGAGGCTACTACACAACCACCAGAATAG  150

seq1  CAAAGTTCGACTCACTGGGCTGAAGACACAGCTCAAGCATTTAAGAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCGACTCACTGGGCTGAAGACACAGCTCAAGCATTTAAGAACAC  200

seq1  TACGACCATCTGTAACTCCAGTCCCAAGACAGCCAATGCCTTCTTCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACCATCTGTAACTCCAGTCCCAAGACAGCCAATGCCTTCTTCTGAC  250

seq1  CCTTTCAGACACCAGACATGCACATGGTGCAGACAAGCACACAGGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGACACCAGACATGCACATGGTGCAGACAAGCACACAGGCAAAA  300

seq1  CACCCACACACAGAAAAATAAGTATAGGACGACATGAATGAATGAGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACACAGAAAAATAAGTATAGGACGACATGAATGAATGAGTCTT  350

seq1  GCAGCAACAACAAAGGATCTCATAAACATAAATGAACAAATGAAAGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAACAACAAAGGATCTCATAAACATAAATGAACAAATGAAAGATGT  400

seq1  CAAAACACACCCTTTCACTATTTGTTTTACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACACCCTTTCACTATTTGTTTTACACACACACACACACACACAC  450

seq1  ACACCTGGGGCAATGTTGCTCTGTGTGACCCTGGTTGATTTGGAACTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGGGCAATGTTGCTCTGTGTGACCCTGGTTGATTTGGAACTCTC  500

seq1  TAGTAGACCAGGCTGGCCTCAGACTCAGAGATCCACATGCCTCTCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGACCAGGCTGGCCTCAGACTCAGAGATCCACATGCCTCTCTGCCT  550

seq1  CCTGAGTGCTGGAACTCAAGATATGTAACACTATGCCCAACATGCTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGCTGGAACTCAAGATATGTAACACTATGCCCAACATGCTTTAT  600

seq1  ACTAAAAACTTAAACAACACTGAGAATGAGTTGTGTGTGACAGTCAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAACTTAAACAACACTGAGAATGAGTTGTGTGTGACAGTCAGAAC  650

seq1  GGTGGTCACTTTGGGGAAGAATTACCTTGGATCTAAGAATGTTCTACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCACTTTGGGGAAGAATTACCTTGGATCTAAGAATGTTCTACTCT  700

seq1  TGGTTGGAGTGTCCCATGCTGTAACAGCTATAAATTGTCCAAGAAAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGAGTGTCCCATGCTGTAACAGCTATAAATTGTCCAAGAAAATGT  750

seq1  ACATGTGCTTTGAGCTTTCAAACTGCATCTTCAAAATTTAGACCCTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGCTTTGAGCTTTCAAACTGCATCTTCAAAATTTAGACCCTGAGT  800

seq1  TTCAATAGTATTTTCATCAGTTAGCACAACTACTCACTACAGTGTAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAGTATTTTCATCAGTTAGCACAACTACTCACTACAGTGTAAAGA  850

seq1  GACACCTACAGTTTCCACCTGAGTCCCACTATTGCCTATATATCCAAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTACAGTTTCCACCTGAGTCCCACTATTGCCTATATATCCAAAGC  900

seq1  AGCCACCACAGCAAAGTCATATATTGCTGTTTCATTTGCCTGTGCCTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCACAGCAAAGTCATATATTGCTGTTTCATTTGCCTGTGCCTCCC  950

seq1  CAAGACTCACCTGGCTAACCCCAACAGAAAAGGGCACACACACTTAAAA-  999
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAAGACTCACCTGGCTAACCCCAACAGAAAAGGGCACACACACTTAAAAT  1000

seq1  TCTTT-GGGCAAAATGGGATGATGAACTATGTCTGTCCTAGAATCCTC-T  1047
      ||||| ||||||||||||||||||||||||||||||||||| |||||| |
seq2  TCTTTGGGGCAAAATGGGATGATGAACTATGTCTGTCCTAG-ATCCTCTT  1049

seq1  AGGAGAGCCATGCATATACCTAAGACAAACCTACA-TTTTCT--GCTG-C  1093
      ||||||||||||||||||||  |||  |||||||| ||||||   ||| |
seq2  AGGAGAGCCATGCATATACCCTAGAACAACCTACATTTTTCTTGCCTGAC  1099

seq1  AGAATTGTTAATGGGTACACA-GCT-GCCTGCC--TAGATTTCTGCTG-C  1138
      |||  ||| |  ||||||||| ||| |||||||  |  ||| |||| | |
seq2  AGA--TGTAATGGGGTACACAGGCTGGCCTGCCCTTGAATTCCTGCGGCC  1147

seq1  TGTCTATTTCTGTTTCTGGATAAGCAGTTCAAAGACCTGTG  1179
      |||||| ||||| |||||||| ||||||||||||| |||||
seq2  TGTCTA-TTCTG-TTCTGGAT-AGCAGTTCAAAGA-CTGTG  1184

seq1: chr17_29501214_29501465
seq2: B6Ng01-280F01.g_74_290

seq1  AGGACCTCTGCTTGCTCCAGTCAACCCTGCTCGCTCCAAGTCGGCCCTGC  50
      |||||| |||||||||||||||||                          
seq2  AGGACCGCTGCTTGCTCCAGTCAA--------------------------  24

seq1  TTGCTCAGTCCCTGCTCATTCCGGCCCGAAGATTTATTTATTATTATACA  100
               ||||||||| || ||||  ||||||| |||||||||||   
seq2  ---------CCCTGCTCACTCTGGCCTAAAGATTTGTTTATTATTATGTC  65

seq1  TAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCT  150
      ||| |||||||||||||||||||||| |||||||||||||  | ||||||
seq2  TAAATACACTGTAGCTGTCTTCAGACGCACCAGAAGAGGGAGTTAGATCT  115

seq1  CATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAG  200
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATTACAGATGGTTGTGAGCCACCATGTGATTGCTGGGATTTGAACTCAG  165

seq1  GACCTTTGGAAGAGTAGTCAGTGCTCTTACCCGCTGAGCCATCTCTCCAG  250
      |||||  ||||||| |||||||||| ||| || |||||||||||||||||
seq2  GACCTCCGGAAGAGCAGTCAGTGCTTTTAACCACTGAGCCATCTCTCCAG  215

seq1  CC  252
      ||
seq2  CC  217