BAC Information

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BAC

Clone NameB6Ng01-288E11
Chromosome7 (Build37)
Map Location 3,119,020 - 3,120,114
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041028, LOC627003, EG664817
Downstream geneSpeer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288E11.bB6Ng01-288E11.g
ACCGA085983GA085984
length1,2151,099
definitionB6Ng01-288E11.b B6Ng01-288E11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgtccactctcaccctacctattcaacattg
tacttgaagtcctagccagagcaattgacaacaaaaggagatcaagggga
tacaaattggaaaggaagaagtcaaaatatcactttttgcagatgatatg
atagtatatataagtgaccctaaaaattccaccagagaactcctaagcct
gataaacagcttcaatgaagtagctggatataaaattaactcaaacaagt
caatggcctttctgtacacaaaggataaacaggctgagaaagaaattagg
gaaacaacacccttctcaatagtcacaaataatataaaatacctcggcgt
gactctaactaaggaagtgaaagatctgtatgataagaacttcaagtctc
taaagaaagaaattaaagaagatctcagaagatggacagatctcccatgc
tcatggattggcaggatcaacattgtaaaaatggcgatcttgccaaaagc
aatctacacattcaatgcaatccccatcaaaattccaactcaattcttca
acgaattagaaagggcaatcggcagattcatctggaataacaaaaaaccg
aggatagcaaaaactcttctcagggataaaagaacctctggcggaatcac
catgccggacctaaaactgtactacagagcaattgtgatcaaaactgcat
ggtactggtatagtgacagacaagtagaccaatggaacagaattgaagac
ccagaaatgaacccacacacctatggtcacttgatctttgacaagggagc
taaaaccatccagtggaaaaaagacagcattttcaacaaatggtgctggc
acaactggcggttatgatgtagaagatgcgaattgatccatttctatctc
cttgtactaagtcaaatctaagtggattaaggaactcacataaaaccaga
gaccactgaactatagagagaaagtagggaaagcctttgaagaatgtgtg
gtacagggggaaatcctgaaatagaacagccaatgcctgtgctgtagatc
gaggatcgatatgggtactcctaaatggccaagcttctcgccagccaaaa
acaccccgtctccat
gaattccttccctaaagaaaaagtcctgctattcaaacataacttaaaac
atctttgggaagataaaatacttgcctgtgctacagaatgagactcgact
gagaaaaatggatacacaaggtcagttgtcactatgaaactcaagctacc
aaaaggaagtggcactatattgactcaggatttcagagctcgggatttta
gcattactgcgtaaaaagttttgaagggacagaagtgaagaaataagcca
cacttttgtacagataccaacttctgaaaacgttggtgtctttacaatga
gcattaaatgcagtctgatttgcagtagtaatcttcaatagacaagctgc
tttgttgctgcctttatggacatgggtaccaattgcttttggtaatatgg
taaaaatgtgagctagcgggctggagagatggctcagtggttaagagcac
tgactgctcttccaaaggtcctgagttcaaattccagcaaccacatggtg
actcacaatcatccctaatgagatctggtgccctcttctggtgtgtctga
agacagctatggtgtactcacataaataaaataaatcttttaaaaaatgt
gagctagcacttctgcattgattttataacatgtattcagattgagaatg
tgattttaatgcttaaacctcatggagtttgtttttaatttcaaacacat
cttactgtgcttgaatgtgccctggtttgttagcacacctagacttgctg
taactgcactcatgtaacagtatgtaccttccctctaggaaagagaaaaa
cactagccttaggttgtatctagtgattttccttgtgtcctttaagaaaa
attaagactattatttcctttccctttcctgtgcagcattcaaaaatcac
ccctagaaaaagtgagtgctttaatgagacttcctaggaagggatgcaag
tgaacaaagtattcttgtatctcagttttgtgaaagttaaagctactatg
ttttaaagtataatttagaaaagtctcttcaaaacagtcctgtattttga
tctctatcatagtttttttattttaaacaagtttagaacaaaacctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3119020_3120114
seq2: B6Ng01-288E11.g_69_1167 (reverse)

seq1  AGCA-GTTTTG-TCTAAAC-TGTTTAAA--TAAAAAACTATGAATAGAGA  45
      |||| |||||| ||||||| ||||||||   ||||||||||| |||||||
seq2  AGCAGGTTTTGTTCTAAACTTGTTTAAAATAAAAAAACTATG-ATAGAGA  49

seq1  TC-AAATACAGGACTGTTTTGAAGAGAC-TTTCTAAATTATACTTTAAAA  93
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAAAATACAGGACTGTTTTGAAGAGACTTTTCTAAATTATACTTTAAAA  99

seq1  CATAGTAGCTTTAACTTTCACAAAACTGAGATACAAGAATACTTTTGTTT  143
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  CATAGTAGCTTTAACTTTCACAAAACTGAGATACAAGAATACTTT--GTT  147

seq1  CACCTTGCATCCCTTCCTAGGAAGTCTCATTAAAGCACTCACTTTTTCTA  193
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-CTTGCATCCCTTCCTAGGAAGTCTCATTAAAGCACTCACTTTTTCTA  196

seq1  GGGGTGATTTTTGAATGCTGCACAGGAAAGGG-AAGGAAATAATAGTCTT  242
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGGTGATTTTTGAATGCTGCACAGGAAAGGGAAAGGAAATAATAGTCTT  246

seq1  AATTTTTCTTAAAGGACACAAGGAAAATCACTAGATACAACCTAAGGCTA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTTAAAGGACACAAGGAAAATCACTAGATACAACCTAAGGCTA  296

seq1  GTGTTTTTCTCTTTCCTAGAGGGAAGGTACATACTGTTACATGAGTGCAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTCTCTTTCCTAGAGGGAAGGTACATACTGTTACATGAGTGCAG  346

seq1  TTACAGCAAGTCTAGGTGTGCTAACAAACCAGGGCACATTCAAGCACAGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCAAGTCTAGGTGTGCTAACAAACCAGGGCACATTCAAGCACAGT  396

seq1  AAGATGTGTTTGAAATTAAAAACAAACTCCATGAGGTTTAAGCATTAAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTGTTTGAAATTAAAAACAAACTCCATGAGGTTTAAGCATTAAAA  446

seq1  TCACATTCTCAATCTGAATACATGTTATAAAATCAATGCAGAAGTGCTAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTCTCAATCTGAATACATGTTATAAAATCAATGCAGAAGTGCTAG  496

seq1  CTCACATTTTTTAAAAGATTTATTTTATTTATGTGAGTACACCATAGCTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTTTTTAAAAGATTTATTTTATTTATGTGAGTACACCATAGCTG  546

seq1  TCTTCAGACACACCAGAAGAGGGCACCAGATCTCATTAGGGATGATTGTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACACACCAGAAGAGGGCACCAGATCTCATTAGGGATGATTGTG  596

seq1  AGTCACCATGTGGTTGCTGGAATTTGAACTCAGGACCTTTGGAAGAGCAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCATGTGGTTGCTGGAATTTGAACTCAGGACCTTTGGAAGAGCAG  646

seq1  TCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCGCTAGCTCACATTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCGCTAGCTCACATTT  696

seq1  TTACCATATTACCAAAAGCAATTGGTACCCATGTCCATAAAGGCAGCAAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATATTACCAAAAGCAATTGGTACCCATGTCCATAAAGGCAGCAAC  746

seq1  AAAGCAGCTTGTCTATTGAAGATTACTACTGCAAATCAGACTGCATTTAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCTTGTCTATTGAAGATTACTACTGCAAATCAGACTGCATTTAA  796

seq1  TGCTCATTGTAAAGACACCAACGTTTTCAGAAGTTGGTATCTGTACAAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTGTAAAGACACCAACGTTTTCAGAAGTTGGTATCTGTACAAAA  846

seq1  GTGTGGCTTATTTCTTCACTTCTGTCCCTTCAAAACTTTTTACGCAGTAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTTATTTCTTCACTTCTGTCCCTTCAAAACTTTTTACGCAGTAA  896

seq1  TGCTAAAATCCCGAGCTCTGAAATCCTGAGTCAATATAGTGCCACTTCCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAATCCCGAGCTCTGAAATCCTGAGTCAATATAGTGCCACTTCCT  946

seq1  TTTGGTAGCTTGAGTTTCATAGTGACAACTGACCTTGTGTATCCATTTTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAGCTTGAGTTTCATAGTGACAACTGACCTTGTGTATCCATTTTT  996

seq1  CTCAGTCGAGTCTCATTCTGTAGCACAGGCAAGTATTTTATCTTCCCAAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCGAGTCTCATTCTGTAGCACAGGCAAGTATTTTATCTTCCCAAA  1046

seq1  GATGTTTTAAGTTATGTTTGAATAGCAGGACTTTTTCTTTAGGGAAGGAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTAAGTTATGTTTGAATAGCAGGACTTTTTCTTTAGGGAAGGAA  1096

seq1  TTC  1095
      |||
seq2  TTC  1099