BAC Information

Click to search

BAC

Clone NameB6Ng01-288G04
Chromosome7 (Build37)
Map Location 19,524,908 - 19,688,431
singlet/doubletdoublet
Overlap geneNova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866
Upstream geneCeacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik
Downstream geneFbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288G04.bB6Ng01-288G04.g
ACCGA086060GA086061
length1,1641,096
definitionB6Ng01-288G04.b B6Ng01-288G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,524,908 - 19,526,038)(19,687,340 - 19,688,431)
sequence
gaattctacaagttgtctcgtctgagtaaagcctagcccagtcagtgagt
tccaaaccaataagagattctgtctcgaaagccaatgacatcccatcttg
tcctctggcctccacccatatgcaaacatgcctgcatacatggatgcagc
ccccaaccgtgcacgcagggaaaatctccaatccagcccttgcccactgt
cccccaccttgtgcttctaacgcctgtctttttcacctttgccctacatt
ctgctcctgtcacggacatcagggaatagtcttgtcttgtttttgagatt
gagtctcatatagagcaggctagcctcagactcactgtgtagctgaacat
aaccctgaactcctgcctctgtcccccaagtgctgggattgcagatgcgc
accatcatactttatttatatggcatcaaggatggaacgcagggctttat
gaattctgggcaaacactcagttgtatccccagcctagaagaacattctt
taaagaaaacaaaacaacaaccacaacaaaaatgaaaaaaacaagccact
taaaaatatttcataaaggtgggtatggtggtacacactttaatcccagc
acttgggagatagatgtctatgagcctggtctatatagtgagttacagga
cagccagggctacataatagagagaccctgtctcgaaacaaatgtagtgt
tttagcttatttttgtatctgtgtgtgaattcacatgcacacacatgtgc
catggcacacttttacagatcagagaacagctgacaggagtctgttctct
ccttctgcaatgtgtgtcctgggtattgaactgaagtcacgtcatgtcag
gcttggccgtagacttcctttgcaccactgaacccatcttgctgggctcc
agagaaaatattccccaaatcttaaattagttcacaccccattcgatccc
tagttcccacttgggaggtaagaatgtcaaaggcatcccctgtggttcca
caagccttcaactagttcaaccattcaccaccgccttcttctcttcttcc
tttccccttcactaaacacaacacgctgttcttccttgacttttcttcaa
caggcttcacatacccatcccactcgggaagacctttcacttcctgccca
aggtggcttcagct
gaattccctggagtttcatgcaattagccatgtgagctcagtccagcgct
ctgtgtcttcctctgattccagttcttgcaggcagaagctattcttgtgt
acttccagtgaggcagacaaagaagccccagactctgacccctggcttcc
tgtttggacctccgaggacagccccaatggtgattacaagtcctctcctt
gtaggctttgagccttctgaacatttctcaccagaggatttccatggcag
aaaaaagcaggaagaagactggggaactgctaagcacagggatggaaaac
actatgcctagcgtcattttgcccctggttgctatgccaggcattgctaa
tcaatccctgcttttccttgagccagctactgcagaaccttttaaacacg
tcgctttgggtcactacggtcaatctgctggccctggcatactgtgatga
tttttcctcttttgttgttgatgtgttgccaggcaatgtgccttttaatt
ttctataccaccttgactccgaatggcaatctcctttccccagtgtctga
cgctatctcctcaaagcttgctgctacattgggggttgactgcatacctg
agtgccatgatcctttgcagggagcccgctggctttggggtcttcccaga
tcaatacttggcatgtggcagactacctgaatgagatcttaggagtcagc
tcttccctcttcagctccccaagcaaaatcctgccggatcatgtcctaga
agatggcacctactttctgactgaaggtgggctactggaatgggaggagc
ctcattcattcataaaacatggggatactcacccaccaaaaatacttggg
cctgagttgagctcagtggactcccagagggccttgaggggcctacagct
cttcacaattgcaggactactaagtcatgtagtgagggggaggctccaaa
aacctgtcactgtgccctttagctggcctatgaatgagacttggacacag
gctaggaatcttaaggggatgaacaattggaaatgcatgcatgggctgtc
ttgggttgcagtcagaaaggctagtctgctagttgcctctgctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19524908_19526038
seq2: B6Ng01-288G04.b_48_1211

seq1  GAATTCTACAAGTTGTCTCGTCTGAGTAAAGCCTAGCCCAGTCAGTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAAGTTGTCTCGTCTGAGTAAAGCCTAGCCCAGTCAGTGAGT  50

seq1  TCCAAACCAATAAGAGATTCTGTCTCGAAAGCCAATGACATCCCATCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCAATAAGAGATTCTGTCTCGAAAGCCAATGACATCCCATCTTG  100

seq1  TCCTCTGGCCTCCACCCATATGCAAACATGCCTGCATACATGGATGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGCCTCCACCCATATGCAAACATGCCTGCATACATGGATGCAGC  150

seq1  CCCCAACCGTGCACGCAGGGAAAATCTCCAATCCAGCCCTTGCCCACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACCGTGCACGCAGGGAAAATCTCCAATCCAGCCCTTGCCCACTGT  200

seq1  CCCCCACCTTGTGCTTCTAACGCCTGTCTTTTTCACCTTTGCCCTACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCTTGTGCTTCTAACGCCTGTCTTTTTCACCTTTGCCCTACATT  250

seq1  CTGCTCCTGTCACGGACATCAGGGAATAGTCTTGTCTTGTTTTTGAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTGTCACGGACATCAGGGAATAGTCTTGTCTTGTTTTTGAGATT  300

seq1  GAGTCTCATATAGAGCAGGCTAGCCTCAGACTCACTGTGTAGCTGAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCATATAGAGCAGGCTAGCCTCAGACTCACTGTGTAGCTGAACAT  350

seq1  AACCCTGAACTCCTGCCTCTGTCCCCCAAGTGCTGGGATTGCAGATGCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGAACTCCTGCCTCTGTCCCCCAAGTGCTGGGATTGCAGATGCGC  400

seq1  ACCATCATACTTTATTTATATGGCATCAAGGATGGAACGCAGGGCTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATACTTTATTTATATGGCATCAAGGATGGAACGCAGGGCTTTAT  450

seq1  GAATTCTGGGCAAACACTCAGTTGTATCCCCAGCCTAGAAGAACATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCAAACACTCAGTTGTATCCCCAGCCTAGAAGAACATTCTT  500

seq1  TAAAGAAAACAAAACAACAACCACAACAAAAATGAAAAAAACAAGCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAACAAAACAACAACCACAACAAAAATGAAAAAAACAAGCCACT  550

seq1  TAAAAATATTTCATAAAGGTGGGTATGGTGGTACACACTTTAATCCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATTTCATAAAGGTGGGTATGGTGGTACACACTTTAATCCCAGC  600

seq1  ACTTGGGAGATAGATGTCTATGAGCCTGGTCTATATAGTGAGTTACAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGATAGATGTCTATGAGCCTGGTCTATATAGTGAGTTACAGGA  650

seq1  CAGCCAGGGCTACATAATAGAGAGACCCTGTCTCGAAACAAATGTAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGCTACATAATAGAGAGACCCTGTCTCGAAACAAATGTAGTGT  700

seq1  TTTAGCTTATTTTTGTATCTGTGTGTGAATTCACATGCACACACATGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTATTTTTGTATCTGTGTGTGAATTCACATGCACACACATGTGC  750

seq1  CATGGCACACTTTTACAGATCAGAGAACAGCTGACAGGAGTCTGTTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCACACTTTTACAGATCAGAGAACAGCTGACAGGAGTCTGTTCTCT  800

seq1  CCTTCTGCAATGTGTGTCCTGGGTATTGAACTGAAGTCACGTCATGTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCAATGTGTGTCCTGGGTATTGAACTGAAGTCACGTCATGTCAG  850

seq1  GCTTGGCCGTAGACT--CCTTGCACCACTGAA-CCATCTTGCT-GGCTCC  896
      |||||||||||||||  | ||||||||||||| |||||||||| ||||||
seq2  GCTTGGCCGTAGACTTCCTTTGCACCACTGAACCCATCTTGCTGGGCTCC  900

seq1  AGAG-AAATATT-CCCAAATCTTAAATTAGTTCACACCCCA-TCGATCCC  943
      |||| ||||||| |||||||||||||||||||||||||||| ||||||||
seq2  AGAGAAAATATTCCCCAAATCTTAAATTAGTTCACACCCCATTCGATCCC  950

seq1  TAGTTCCCACTTGG--AGTAAGA--GTCAAAGGCAT-CCCTGTGG-TCCA  987
      ||||||||||||||   ||||||  ||||||||||| |||||||| ||||
seq2  TAGTTCCCACTTGGGAGGTAAGAATGTCAAAGGCATCCCCTGTGGTTCCA  1000

seq1  CAAGCCT--CACCAG-TCCACCA-TCACCACCGCCTTCTCTCCTTCTTCC  1033
      |||||||   || || || |||| |||||||||||||||   ||||||||
seq2  CAAGCCTTCAACTAGTTCAACCATTCACCACCGCCTTCTTCTCTTCTTCC  1050

seq1  -TTCCCCCTCACT-AACAC-ACACGCTGT--CTCCTTGACTTT--CTCAA  1076
       |||||| ||||| ||||| |||||||||   |||||||||||   ||||
seq2  TTTCCCCTTCACTAAACACAACACGCTGTTCTTCCTTGACTTTTCTTCAA  1100

seq1  CAG--CTCACATA-CCATCCCACTCGG--AGACC-TTCAC-TCCTG-CCA  1118
      |||   ||||||| |||||||||||||  ||||| ||||| ||||| |||
seq2  CAGGCTTCACATACCCATCCCACTCGGGAAGACCTTTCACTTCCTGCCCA  1150

seq1  AGGTGGC-TCAGCT  1131
      ||||||| ||||||
seq2  AGGTGGCTTCAGCT  1164

seq1: chr7_19687340_19688431
seq2: B6Ng01-288G04.g_68_1163 (reverse)

seq1  GTGAGCAGAG--CACTAGCAGGACTAGGCTTTCTGACTGCA--CCCAGAC  46
      ||||||||||   ||||||| |||||| |||||||||||||  || ||||
seq2  GTGAGCAGAGGCAACTAGCA-GACTAGCCTTTCTGACTGCAACCCAAGAC  49

seq1  AGCCCCTGCCCTGCATTTCC-ATTGT--CTCCCCTTTAGAATTTCCTAGC  93
      ||||| || | ||||||||| |||||   ||||||| |||  ||||||||
seq2  AGCCCATG-CATGCATTTCCAATTGTTCATCCCCTTAAGA--TTCCTAGC  96

seq1  CTGTGTCCAAGTCTCATTCATAGGCCAGCT-AAGGGCACAGTGACAGGTT  142
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGTGTCCAAGTCTCATTCATAGGCCAGCTAAAGGGCACAGTGACAGGTT  146

seq1  TTTGGAGCCTCCCCCTCACTACATGACTTAGTAGTCCCTGC-ATTGTGAA  191
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  TTTGGAGCCTCCCCCTCACTACATGACTTAGTAGT-CCTGCAATTGTGAA  195

seq1  GAGCTGTAGGCCCCTCAAGGCCCTCTGGGAGTCCACTGAGCTCAACTCAG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTAGGCCCCTCAAGGCCCTCTGGGAGTCCACTGAGCTCAACTCAG  245

seq1  GCCCAAGTATTTTTGGTGGGTGAGTATCCCCATGTTTTATGAATGAATGA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGTATTTTTGGTGGGTGAGTATCCCCATGTTTTATGAATGAATGA  295

seq1  GGCTCCTCCCATTCCAGTAGCCCACCTTCAGTCAGAAAGTAGGTGCCATC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTCCCATTCCAGTAGCCCACCTTCAGTCAGAAAGTAGGTGCCATC  345

seq1  TTCTAGGACATGATCCGGCAGGATTTTGCTTGGGGAGCTGAAGAGGGAAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGACATGATCCGGCAGGATTTTGCTTGGGGAGCTGAAGAGGGAAG  395

seq1  AGCTGACTCCTAAGATCTCATTCAGGTAGTCTGCCACATGCCAAGTATTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTCCTAAGATCTCATTCAGGTAGTCTGCCACATGCCAAGTATTG  445

seq1  ATCTGGGAAGACCCCAAAGCCAGCGGGCTCCCTGCAAAGGATCATGGCAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGAAGACCCCAAAGCCAGCGGGCTCCCTGCAAAGGATCATGGCAC  495

seq1  TCAGGTATGCAGTCAACCCCCAATGTAGCAGCAAGCTTTGAGGAGATAGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTATGCAGTCAACCCCCAATGTAGCAGCAAGCTTTGAGGAGATAGC  545

seq1  GTCAGACACTGGGGAAAGGAGATTGCCATTCGGAGTCAAGGTGGTATAGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACACTGGGGAAAGGAGATTGCCATTCGGAGTCAAGGTGGTATAGA  595

seq1  AAATTAAAAGGCACATTGCCTGGCAACACATCAACAACAAAAGAGGAAAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAGGCACATTGCCTGGCAACACATCAACAACAAAAGAGGAAAA  645

seq1  ATCATCACAGTATGCCAGGGCCAGCAGATTGACCGTAGTGACCCAAAGCG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCACAGTATGCCAGGGCCAGCAGATTGACCGTAGTGACCCAAAGCG  695

seq1  ACGTGTTTAAAAGGTTCTGCAGTAGCTGGCTCAAGGAAAAGCAGGGATTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTTTAAAAGGTTCTGCAGTAGCTGGCTCAAGGAAAAGCAGGGATTG  745

seq1  ATTAGCAATGCCTGGCATAGCAACCAGGGGCAAAATGACGCTAGGCATAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAATGCCTGGCATAGCAACCAGGGGCAAAATGACGCTAGGCATAG  795

seq1  TGTTTTCCATCCCTGTGCTTAGCAGTTCCCCAGTCTTCTTCCTGCTTTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCATCCCTGTGCTTAGCAGTTCCCCAGTCTTCTTCCTGCTTTTT  845

seq1  TCTGCCATGGAAATCCTCTGGTGAGAAATGTTCAGAAGGCTCAAAGCCTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATGGAAATCCTCTGGTGAGAAATGTTCAGAAGGCTCAAAGCCTA  895

seq1  CAAGGAGAGGACTTGTAATCACCATTGGGGCTGTCCTCGGAGGTCCAAAC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGAGGACTTGTAATCACCATTGGGGCTGTCCTCGGAGGTCCAAAC  945

seq1  AGGAAGCCAGGGGTCAGAGTCTGGGGCTTCTTTGTCTGCCTCACTGGAAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCAGGGGTCAGAGTCTGGGGCTTCTTTGTCTGCCTCACTGGAAG  995

seq1  TACACAAGAATAGCTTCTGCCTGCAAGAACTGGAATCAGAGGAAGACACA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAGAATAGCTTCTGCCTGCAAGAACTGGAATCAGAGGAAGACACA  1045

seq1  GAGCGCTGGACTGAGCTCACATGGCTAATTGCATGAAACTCCAGGGAATT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCTGGACTGAGCTCACATGGCTAATTGCATGAAACTCCAGGGAATT  1095

seq1  C  1092
      |
seq2  C  1096