BAC Information

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BAC

Clone NameB6Ng01-288L15
Chromosome7 (Build37)
Map Location 6,210,027 - 6,211,111
singlet/doubletsinglet
Overlap geneEG627821
Upstream geneNlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371
Downstream geneZfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288L15.bB6Ng01-288L15.g
ACCGA086316GA086317
length1,2191,083
definitionB6Ng01-288L15.b B6Ng01-288L15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaattccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggatagataaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtaattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattggatctgtagattgcttttggcaagatagccattt
ttacaatgtttgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttcttcagagactttgaagtttttatca
tacagatctttcactttcctttagttagagtcacaccgagatatttatat
tatttgtgactattgagaaaggtgttgtttcccctaatttcttctcagcc
ttgtttatttctttgtgtagagaaagccattgacttgtttgagtttaatt
ttatatccagcctacttctacgaagctgttttatcaggtttaggaagttc
tcttgggggaaattttagggtcaccttatattatactaatcataatcatc
tcgcaataacgtgaatattttgaacttcctcctttcacgcatccgttacg
tcgcgctaccgtggatttc
gaattctatcaaaggaggtatcctggctactcagattctctttagtccct
agattagaagctaggctttggacccaggacaggaaatgctggttgaaagt
caggttattgtttctgagggacaaaatcggctagatcagatggggaagga
aatacactcttacctttcagcactgtgtgcacgagaggatcaggaaagac
agggtgagccgggaccaatgggacatttgtccaaccaaagaaggaatatg
gaatggaatcaattaggtcatcttttatgcatcgtcccttagtgtacttc
aaagatccccaaatagggcacggaaactagaatggggagctttgacttag
cctctggttctgccatctctttgaagatgcatccattctggaaatgagag
ctccagggaatctaaccctccctgttccaggagcttagcagaatcggtct
acataacaacggattgtcaaccttctattctcagctggaggccaggttgt
ttacttctcagaaaagaagaaagccttctgacctgttactcaccgggaaa
taccgcgcggtccactctggctatatagagaactggggctcccactctct
ttgatcagctctttgatcctactgacattaatatcaaactatagtcatgg
aaaccaacaaaggttctttctttctctcttgcaagcaccaatcctatgag
atctggccccacccaatgacctttagagctaggtcaagtggccaggttca
agttgagtattctctgagtctgctcctgcacaatgtgatggttagtgttt
gccccctcacttttgtctctctgagttggatcccccccccaccccaaccc
ttgtttatatagagagggattgtgacttacttttgactggaggcggagtg
ggaaccagagtcattgagtcagccagaaaaaaaaaaaataatcgaagcaa
acagagggtggggtcagtacatatgcaaattacctcagtctcaccttgta
agtcttgttctccaaggacagttacacaccgaactgtttaataggagggg
ctttacgttaatacaaatgcgactgccagtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6210027_6211111
seq2: B6Ng01-288L15.g_68_1150 (reverse)

seq1  GACACTGGGCAGTCGGCCTTTGTATT-ACGTAAAAGCCCCTCCCTATT-A  48
      |||||| ||||||| || |||||||| |||| ||||||||| |||||| |
seq2  GACACT-GGCAGTC-GCATTTGTATTAACGT-AAAGCCCCT-CCTATTAA  46

seq1  ACAG-TCGGTGTGTAACTGTTCCTTGAAGGAACAAAGACTTACAAGGTGA  97
      |||| |||||||||||||| |||||| | |||| ||||||||||||||||
seq2  ACAGTTCGGTGTGTAACTG-TCCTTGGA-GAAC-AAGACTTACAAGGTGA  93

seq1  GACTGAGGTAATTTGCATATGTACTGA-CCCACCCTCTTGTTTGCTTCGA  146
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  GACTGAGGTAATTTGCATATGTACTGACCCCACCCTC-TGTTTGCTTCGA  142

seq1  TT-TTTTTTTTTTTTCTGGCTGACTCAATGACTCTGGTTCCCACTCCGCC  195
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTTTTTTCTGGCTGACTCAATGACTCTGGTTCCCACTCCGCC  192

seq1  TCCAGTCAAAAGTAAGTCACAATCCCTCTCTATATAAACAAGGGTTGGGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCAAAAGTAAGTCACAATCCCTCTCTATATAAACAAGGGTTGGGG  242

seq1  T-GGGGGGGGATCCAACTCAGAGAGACAAAAGTGAGGGGGCAAACACTAA  294
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGGGATCCAACTCAGAGAGACAAAAGTGAGGGGGCAAACACTAA  292

seq1  CCATCACATTGTGCAGGAGCAGACTCAGAGAATACTCAACTTGAACCTGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACATTGTGCAGGAGCAGACTCAGAGAATACTCAACTTGAACCTGG  342

seq1  CCACTTGACCTAGCTCTAAAGGTCATTGGGTGGGGCCAGATCTCATAGGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGACCTAGCTCTAAAGGTCATTGGGTGGGGCCAGATCTCATAGGA  392

seq1  TTGGTGCTTGCAAGAGAGAAAGAAAGAACCTTTGTTGGTTTCCATGACTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCTTGCAAGAGAGAAAGAAAGAACCTTTGTTGGTTTCCATGACTA  442

seq1  TAGTTTGATATTAATGTCAGTAGGATCAAAGAGCTGATCAAAGAGAGTGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGATATTAATGTCAGTAGGATCAAAGAGCTGATCAAAGAGAGTGG  492

seq1  GAGCCCCAGTTCTCTATATAGCCAGAGTGGACCGCGCGGTATTTCCCGGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCAGTTCTCTATATAGCCAGAGTGGACCGCGCGGTATTTCCCGGT  542

seq1  GAGTAACAGGTCAGAAGGCTTTCTTCTTTTCTGAGAAGTAAACAACCTGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAACAGGTCAGAAGGCTTTCTTCTTTTCTGAGAAGTAAACAACCTGG  592

seq1  CCTCCAGCTGAGAATAGAAGGTTGACAATCCGTTGTTATGTAGACCGATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCTGAGAATAGAAGGTTGACAATCCGTTGTTATGTAGACCGATT  642

seq1  CTGCTAAGCTCCTGGAACAGGGAGGGTTAGATTCCCTGGAGCTCTCATTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGCTCCTGGAACAGGGAGGGTTAGATTCCCTGGAGCTCTCATTT  692

seq1  CCAGAATGGATGCATCTTCAAAGAGATGGCAGAACCAGAGGCTAAGTCAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATGGATGCATCTTCAAAGAGATGGCAGAACCAGAGGCTAAGTCAA  742

seq1  AGCTCCCCATTCTAGTTTCCGTGCCCTATTTGGGGATCTTTGAAGTACAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCCATTCTAGTTTCCGTGCCCTATTTGGGGATCTTTGAAGTACAC  792

seq1  TAAGGGACGATGCATAAAAGATGACCTAATTGATTCCATTCCATATTCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGACGATGCATAAAAGATGACCTAATTGATTCCATTCCATATTCCT  842

seq1  TCTTTGGTTGGACAAATGTCCCATTGGTCCCGGCTCACCCTGTCTTTCCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTTGGACAAATGTCCCATTGGTCCCGGCTCACCCTGTCTTTCCT  892

seq1  GATCCTCTCGTGCACACAGTGCTGAAAGGTAAGAGTGTATTTCCTTCCCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTCGTGCACACAGTGCTGAAAGGTAAGAGTGTATTTCCTTCCCC  942

seq1  ATCTGATCTAGCCGATTTTGTCCCTCAGAAACAATAACCTGACTTTCAAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATCTAGCCGATTTTGTCCCTCAGAAACAATAACCTGACTTTCAAC  992

seq1  CAGCATTTCCTGTCCTGGGTCCAAAGCCTAGCTTCTAATCTAGGGACTAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTCCTGTCCTGGGTCCAAAGCCTAGCTTCTAATCTAGGGACTAA  1042

seq1  AGAGAATCTGAGTAGCCAGGATACCTCCTTTGATAGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATCTGAGTAGCCAGGATACCTCCTTTGATAGAATTC  1083