BAC Information

Click to search

BAC

Clone NameB6Ng01-290J10
Chromosome7 (Build37)
Map Location 120,145,957 - 120,310,061
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042678, Usp47, Dkk3, Mical2, Micalcl, Parva, LOC627808, Tead1, 4632411J06Rik, LOC434227
Downstream geneArntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228, Spon1, Rras2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290J10.bB6Ng01-290J10.g
ACCGA087694GA087695
length1,181855
definitionB6Ng01-290J10.b B6Ng01-290J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,308,872 - 120,310,061)(120,145,957 - 120,146,812)
sequence
gaattcattgacagtgtctgtcagcgaagaaatgtcagagcttttggttc
caactgtccccatgccgtcctctggctttccctgggtgagcggtaacatt
ttcaaatggagaaaaatctcctggtaatgtcgctgtcctcccccagagca
gatttacagcagagtggctggcattttcacagactctgcgcttgtcagtg
tcagcttttatatgtccctgggtccccatacatatgtatatataggcatc
atttgaatccccagcgaacaaaggctctttttccaacttggagatatttt
aaaagatctctccatttcatctatttttaagtgtttgtgtgatttaaggg
tatgctaatattagggcccgaggagctggctcagcggctaaagcgcttgt
tgcacaagcttgagggcctgagttcacatcctcagtgcccaggtaaaacg
gggcacagtggtgcgtatctgtaaccccaatgctggggtgagcagagacg
gatggattctggggccttgctgggtagccagctagctaaattggcaagct
ctaggttgagtcagaaaccctgtctcgggaggcagagacaggtggatttc
tgagtttgaggccagcctggtttacaaagtgagttccaggacaaccaggg
ctacacagagaaaccctgtctcaaaaaaccaaaaaaaaaaaaaaaaaaaa
aaaaagaaagaaaagaaagaaaaaagaaacaacaaacaaacaaacaaaaa
tcatgtggacagtgatagaggaagacatacaacattagtggcacactcag
aggtgagtacacccctctctgccacgcaagtcacctcacatgatacaggg
gaggacaaaaatactcagcttctagtggccagtcatgcaggtacagtagg
cactttctagaacaacattttatctaccccacaggaaaaggcatgtgtta
tctgtgtttacagaaaaggaaactctaaggctcagcaagatgaattacta
attcaaagtcacgtgaacgcgcgcgcgcgtcgcgcgcgcgcgcacacata
acacaatcacaaacaaacacacaacacacttgacgtaatctgtaatgatg
aatttctttgctagtgcatttattttgcaaggacctttctctaggtcaat
tagtgcaaaccattaaccctgcacagagtat
gaattcagtttactgaaaccctgaacaaaattagttgccattccactctt
cttctccttccttctcctcctcctcctcctcctcctccccccctcctctt
cctggcagtgtgggccttcccaggtccatttggtctatgaaactcgagga
gtttatcccaaacatcccattgacttgcataaactgcttttgggcacata
ctgtgtagagaacccctgcctttaactcaggcattctgcaaacatgtatt
actattgccagagacatagacccagtttttaaaacatcaaaataaatcat
ggggtgttatgggcatttccagatactgcatgtcacacatttatacacca
actagactttggagaaatagggagggaaggagcttgtctgtagggttcac
tggacttggtggatctccatgtggtgacagatgagggtcaaatgccagca
gcggtggtggtggctgcggcagcagcggcagaagcaatggctgcagggcc
ccactcctccaacctcagtctgatcctcagttacttgttcataagttgag
ttttggtatttagatactactggaggatctaggggatagagcaacacatg
caatagacagcagagttaacatttcaggaagaattgcagaaagcaaagat
gcatccatcaagtacaaatgtaacacaatttcagatgacaataagcacca
cactctcccacaaaataaaataacagaaaaaatcatgtactgctcatatt
ctcagtcagtgggtctcagtcatgtgtctatgtgcctgtgatgtcactta
attaaatcaaatatatataaataagtggaggaggaggagaaggagaggag
gagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_120308872_120310061
seq2: B6Ng01-290J10.b_46_1226 (reverse)

seq1  ATACTCTGTGCA-GGTTAATGGTCTCCACCTCACATTTGGACACTAGGGA  49
      |||||||||||| |||||||||| | || || |    | ||| ||||   
seq2  ATACTCTGTGCAGGGTTAATGGTTTGCA-CTAA----TTGAC-CTAG---  41

seq1  AGAAAGCGGCCCTTGGAAAAATAAAATGCCACTAGCAAAGAAATCCATCA  99
      |||||  || ||||| ||||   ||||| ||||||||||||||| |||||
seq2  AGAAA--GGTCCTTGCAAAA--TAAATG-CACTAGCAAAGAAATTCATCA  86

seq1  TTACAGA-TACGCCGAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  148
      ||||||| |||| | || |||| ||||||| ||| ||||  ||||| | |
seq2  TTACAGATTACGTCAAGTGTGT-TGTGTGTTTGTTTGTGATTGTGT-TAT  134

seq1  GTGTGCGCGCGCGCGCG-CGCGCGCGCGCGTGCACGTGACTTTGAATAAG  197
      ||||||||||||||||| ||||||||||||| ||||||||||||||| ||
seq2  GTGTGCGCGCGCGCGCGACGCGCGCGCGCGTTCACGTGACTTTGAATTAG  184

seq1  TAATTCATCTTGCTGAGCCTTAGAGTTTCC-TTTCTGTAAACACAAGATA  246
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  TAATTCATCTTGCTGAGCCTTAGAGTTTCCTTTTCTGTAAACAC-AGATA  233

seq1  ACACATGCC-TTTCCTGT-GGGTAGATAAAATGTTG-TCTAGAAAGTGCC  293
      ||||||||| |||||||| ||||||||||||||||| |||||||||||||
seq2  ACACATGCCTTTTCCTGTGGGGTAGATAAAATGTTGTTCTAGAAAGTGCC  283

seq1  TACTGTACCTGCATGACTGGCCACTAGAAGCTGAGTA-TTTTGTCCTCCC  342
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACTGTACCTGCATGACTGGCCACTAGAAGCTGAGTATTTTTGTCCTCCC  333

seq1  CTGTATCATGTGAGGTGACTTGCGTGGCAGAGAGGGGTGTACTCACCTCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCATGTGAGGTGACTTGCGTGGCAGAGAGGGGTGTACTCACCTCT  383

seq1  GAGTGTGCCACTAATGTTGTATGTCTTCCTCTATCACTGTCCACATGATT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGCCACTAATGTTGTATGTCTTCCTCTATCACTGTCCACATGATT  433

seq1  TTTGTTTGTTTGTTTGTTGTTTCTTTTTTCTTTCTTTTCTTTCTTTTTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTGTTTCTTTTTTCTTTCTTTTCTTTCTTTTTTT  483

seq1  TTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCC  533

seq1  CTGGTTGTCCTGGAACTCACTTTGTAAACCAGGCTGGCCTCAAACTCAGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGTCCTGGAACTCACTTTGTAAACCAGGCTGGCCTCAAACTCAGA  583

seq1  AATCCACCTGTCTCTGCCTCCCGAGACAGGGTTTCTGACTCAACCTAGAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACCTGTCTCTGCCTCCCGAGACAGGGTTTCTGACTCAACCTAGAG  633

seq1  CTTGCCAATTTAGCTAGCTGGCTACCCAGCAAGGCCCCAGAATCCATCCG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAATTTAGCTAGCTGGCTACCCAGCAAGGCCCCAGAATCCATCCG  683

seq1  TCTCTGCTCACCCCAGCATTGGGGTTACAGATACGCACCACTGTGCCCCG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTCACCCCAGCATTGGGGTTACAGATACGCACCACTGTGCCCCG  733

seq1  TTTTACCTGGGCACTGAGGATGTGAACTCAGGCCCTCAAGCTTGTGCAAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTGGGCACTGAGGATGTGAACTCAGGCCCTCAAGCTTGTGCAAC  783

seq1  AAGCGCTTTAGCCGCTGAGCCAGCTCCTCGGGCCCTAATATTAGCATACC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCTTTAGCCGCTGAGCCAGCTCCTCGGGCCCTAATATTAGCATACC  833

seq1  CTTAAATCACACAAACACTTAAAAATAGATGAAATGGAGAGATCTTTTAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATCACACAAACACTTAAAAATAGATGAAATGGAGAGATCTTTTAA  883

seq1  AATATCTCCAAGTTGGAAAAAGAGCCTTTGTTCGCTGGGGATTCAAATGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCCAAGTTGGAAAAAGAGCCTTTGTTCGCTGGGGATTCAAATGA  933

seq1  TGCCTATATATACATATGTATGGGGACCCAGGGACATATAAAAGCTGACA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATATATACATATGTATGGGGACCCAGGGACATATAAAAGCTGACA  983

seq1  CTGACAAGCGCAGAGTCTGTGAAAATGCCAGCCACTCTGCTGTAAATCTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAGCGCAGAGTCTGTGAAAATGCCAGCCACTCTGCTGTAAATCTG  1033

seq1  CTCTGGGGGAGGACAGCGACATTACCAGGAGATTTTTCTCCATTTGAAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGGAGGACAGCGACATTACCAGGAGATTTTTCTCCATTTGAAAA  1083

seq1  TGTTACCGCTCACCCAGGGAAAGCCAGAGGACGGCATGGGGACAGTTGGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCGCTCACCCAGGGAAAGCCAGAGGACGGCATGGGGACAGTTGGA  1133

seq1  ACCAAAAGCTCTGACATTTCTTCGCTGACAGACACTGTCAATGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGCTCTGACATTTCTTCGCTGACAGACACTGTCAATGAATTC  1181

seq1: chr7_120145957_120146812
seq2: B6Ng01-290J10.g_66_920

seq1  GAATTCAGTTTACTGAAACCCTGAACAAAATTAGTTGCCATTCCACTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTACTGAAACCCTGAACAAAATTAGTTGCCATTCCACTCTT  50

seq1  CTTCTCCTTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCCCCCCTCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCCCCCCTCCTCTT  100

seq1  CCTGGCAGTGTGGGCCTTCCCAGGTCCATTTGGTCTATGAAACTCGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGTGTGGGCCTTCCCAGGTCCATTTGGTCTATGAAACTCGAGGA  150

seq1  GTTTATCCCAAACATCCCATTGACTTGCATAAACTGCTTTTGGGCACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCCCAAACATCCCATTGACTTGCATAAACTGCTTTTGGGCACATA  200

seq1  CTGTGTAGAGAACCCCTGCCTTTAACTCAGGCATTCTGCAAACATGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGAGAACCCCTGCCTTTAACTCAGGCATTCTGCAAACATGTATT  250

seq1  ACTATTGCCAGAGACATAGACCCAGTTTTTAAAACATCAAAATAAATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGCCAGAGACATAGACCCAGTTTTTAAAACATCAAAATAAATCAT  300

seq1  GGGGTGTTATGGGCATTTCCAGATACTGCATGTCACACATTTATACACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTTATGGGCATTTCCAGATACTGCATGTCACACATTTATACACCA  350

seq1  ACTAGACTTTGGAGAAATAGGGAGGGAAGGAGCTTGTCTGTAGGGTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACTTTGGAGAAATAGGGAGGGAAGGAGCTTGTCTGTAGGGTTCAC  400

seq1  TGGACTTGGTGGATCTCCATGTGGTGACAGATGAGGGTCAAATGCCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGGTGGATCTCCATGTGGTGACAGATGAGGGTCAAATGCCAGCA  450

seq1  GCGGTGGTGGTGGCTGCGGCAGCAGCGGCAGAAGCAATGGCTGCAGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGGTGGTGGCTGCGGCAGCAGCGGCAGAAGCAATGGCTGCAGGGCC  500

seq1  CCACTCCTCCAACCTCAGTCTGATCCTCAGTTACTTGTTCATAAGTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCTCCAACCTCAGTCTGATCCTCAGTTACTTGTTCATAAGTTGAG  550

seq1  TTTTGGTATTTAGATACTACTGGAGGATCTAGGGGATAGAGCAACACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTATTTAGATACTACTGGAGGATCTAGGGGATAGAGCAACACATG  600

seq1  CAATAGACAGCAGAGTTAACATTTCAGGAAGAATTGCAGAAAGCAAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGACAGCAGAGTTAACATTTCAGGAAGAATTGCAGAAAGCAAAGAT  650

seq1  GCATCCATCAAGTACAAATGTAACACAATTTCAGATGACAATAAGCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATCAAGTACAAATGTAACACAATTTCAGATGACAATAAGCACCA  700

seq1  CACTCTCCCACAAAATAAAATAACAGAAAAAATCATGTACTGCTCATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCCCACAAAATAAAATAACAGAAAAAATCATGTACTGCTCATATT  750

seq1  CTCAGTCAGTGGGTCTCAGTCATGTGTCTATGTGCCTGTGATGTCACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCAGTGGGTCTCAGTCATGTGTCTATGTGCCTGTGATGTCACTTA  800

seq1  ATTAAATCAAATATATATAAATAAGTGGAGGAGGAGGAGAAGGAGAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTAAATCAAATATATATAAATAAGTGGAGGAGGAGGAGAAGGAG-AGGA  849

seq1  GGAGGA  856
      ||||||
seq2  GGAGGA  855