BAC Information

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BAC

Clone NameB6Ng01-292K16
Chromosome7 (Build37)
Map Location 107,521,052 - 107,653,934
singlet/doubletdoublet
Overlap geneAU020772, Ucp3, Ucp2, Dnajb13
Upstream geneGdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1
Downstream geneLOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292K16.bB6Ng01-292K16.g
ACCGA089246GA089247
length1,0371,047
definitionB6Ng01-292K16.b B6Ng01-292K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,652,902 - 107,653,934)(107,521,052 - 107,522,078)
sequence
gaattccaggctagtctggctacagagtaagtcacaggcaagcaagaagg
caggcaagcaaacagatacccagtgccaacatcctccactctggtcacct
ttttccaaccttctgacatggcccagggcctctgcagcgcccagcctctg
ggccttgagcttactatttctgacctatatgactatttctgaccatctgc
tttttttttttttttttttttttggttttggttttggttttggtttttca
agacagggtttctctgtatagccgtggctgtcctggaactcactttgtaa
accaggctggcctcgaactcagaagtctgcctgcctctgcctcccgagtg
ctgggattaaaggcgtgcgccaccacgcctggctcatctgctatgtcttg
tcctggggacagcagctgcttttgctctctgtcttcagtggccagaagag
aagtcagagttcagggcggctcactgaagcgaagaaatcactgctgagtt
tccgttaggcagagaagttgtctgaccagctcagggtccgactatcactt
aagcaagtccccaccccatccccctgagtacatttactttgggcatgctc
agtagagaggtacttggggagtggagagtgatccaggaagacttctctag
ggggtggccctaggccacactgaatatcccctctagaaaactgggtctaa
ttctccattgcacagatgaagacctggagacatgtagagacagaaacgtg
gccaattgatataagcaataaacctgtctgtcgccacttggcttttccct
gcctagggccccaacatcatccctgctgacattatcttcattgtgaagga
gaagctgcaccctcgcttccgcagggagcatgacaacctcttcttcgtgt
accccattccttttggggcaagggtgagtgggcacagtgcagaaagggca
tggggggcccaaatgaatccctacttacagcagctcaggctcatctcttc
ctcccctaacaactggaaccggtcggaagcagagtcc
gaattctaaggagacttccacccgctccggttaaacaaaacaaaacaaaa
caaaagaggacggaagagagactaactagggaaccagaaagttaagagaa
ttttttttttttttaaagaatggaaaggaagtagcgcctgagggtcgata
aatgaggcaagtgaggattaatagatacggataggagaacaacaaaatta
aacgtgctctttttacgacagggatacacgtatgtgtgttagaggtattc
ggagtagggggaagggacataactctgtccggaaaaaccttagatggtga
aagggtgtgtgatagaggacatcgtgaaacctgtaacccaagcttactca
aaaagcaaataaaaccacttatatatatatatacccttctacttctctga
ttttttccttgggaagcgattgcgcttcataagaatatactgagatctca
tcaggaatcaatacaaggagttttttcaactaaaacagtttgtgtcctgt
agcatgaagaaaaagatctaccataaagcgcagggataattcgttgaaat
ggaaacatatgtgcatatatggactgctcctcacttagaatgacttgaat
ccaacttaaatcctcttagttatccagctcctataagggggccctatgaa
ccccaggctggccttgaacttgatccgcctgcagaaaaactcttggtttt
ttttgttttgtttgtttgtttgtttgttttgtttttaagtcttctctaaa
tctttcagaaaaggtactgactgaaaggaaagccagagttgtaactgatc
gcttcatttacatattattcatcacctttctgaactctagtaagatttga
cgttaacattttggaacccaggaaccaaagggtaggcagcaaacctaaaa
atgttagtctctgtcccttgactgtatgggtccttgacagccaaagacaa
ttttaagagtgaagaataagagcctgctggtgggtgggcctagcctttat
gcccaagtaacttggggaggcagaggctaggcatgaatcttttgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_107652902_107653934
seq2: B6Ng01-292K16.b_45_1081 (reverse)

seq1  GGACTCTGCCTCCGACGGGTCCAAGTTGGTTAGGGGAAGAAGAGATGAAG  50
      ||||||||| |||||| ||| | |||| ||||||||| ||||||||| ||
seq2  GGACTCTGCTTCCGACCGGTTCCAGTT-GTTAGGGGAGGAAGAGATG-AG  48

seq1  CCTGAGCTGCTGTAAGT-GGGGTTCACTCTGGGCCCCCATGCCC-TTCTG  98
      ||||||||||||||||| ||| |||| |  || ||||||||||| |||||
seq2  CCTGAGCTGCTGTAAGTAGGGATTCATTTGGGCCCCCCATGCCCTTTCTG  98

seq1  CACTGTGCCCACTCA-CCTTGCCC--AAAGGAATGGGGTACACGAAGAAG  145
      ||||||||||||||| ||||||||  ||||||||||||||||||||||||
seq2  CACTGTGCCCACTCACCCTTGCCCCAAAAGGAATGGGGTACACGAAGAAG  148

seq1  AGGTTGTCATGCTCCCTGCGGAAGCGAGGGTGCAGCTTCTCCTTCACAAT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTCATGCTCCCTGCGGAAGCGAGGGTGCAGCTTCTCCTTCACAAT  198

seq1  GAAGATAATGTCAGCAGGGATGATGTTGGGGCCCTAGGCAGGG-AAAGCC  244
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAGATAATGTCAGCAGGGATGATGTTGGGGCCCTAGGCAGGGAAAAGCC  248

seq1  AAGTGGCGACAGACAGGTTTATTGCTTATATCAATTGGCCACGTTTCTGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCGACAGACAGGTTTATTGCTTATATCAATTGGCCACGTTTCTGT  298

seq1  CTCTACATGTCTCCAGGTCTTCATCTGTGCAATGGAGAATTAGACCCAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATGTCTCCAGGTCTTCATCTGTGCAATGGAGAATTAGACCCAGT  348

seq1  TTTCTAGAGGGGATATTCAGTGTGGCCTAGGGCCACCCCCTAGAGAAGTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGAGGGGATATTCAGTGTGGCCTAGGGCCACCCCCTAGAGAAGTC  398

seq1  TTCCTGGATCACTCTCCACTCCCCAAGTACCTCTCTACTGAGCATGCCCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGATCACTCTCCACTCCCCAAGTACCTCTCTACTGAGCATGCCCA  448

seq1  AAGTAAATGTACTCAGGGGGATGGGGTGGGGACTTGCTTAAGTGATAGTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATGTACTCAGGGGGATGGGGTGGGGACTTGCTTAAGTGATAGTC  498

seq1  GGACCCTGAGCTGGTCAGACAACTTCTCTGCCTAACGGAAACTCAGCAGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTGAGCTGGTCAGACAACTTCTCTGCCTAACGGAAACTCAGCAGT  548

seq1  GATTTCTTCGCTTCAGTGAGCCGCCCTGAACTCTGACTTCTCTTCTGGCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTCGCTTCAGTGAGCCGCCCTGAACTCTGACTTCTCTTCTGGCC  598

seq1  ACTGAAGACAGAGAGCAAAAGCAGCTGCTGTCCCCAGGACAAGACATAGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGACAGAGAGCAAAAGCAGCTGCTGTCCCCAGGACAAGACATAGC  648

seq1  AGATGAGCCAGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGCCAGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGG  698

seq1  CAGAGGCAGGCAGACTTCTGAGTTCGAGGCCAGCCTGGTTTACAAAGTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCAGACTTCTGAGTTCGAGGCCAGCCTGGTTTACAAAGTGA  748

seq1  GTTCCAGGACAGCCACGGCTATACAGAGAAACCCTGTCTTGAAAAACCAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGACAGCCACGGCTATACAGAGAAACCCTGTCTTGAAAAACCAA  798

seq1  AACCAAAACCAAAACCAAAAAAAAAAAAAAAAAAAAAAAGCAGATGGTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAACCAAAACCAAAAAAAAAAAAAAAAAAAAAAAGCAGATGGTCA  848

seq1  GAAATAGTCATATAGGTCAGAAATAGTAAGCTCAAGGCCCAGAGGCTGGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTCATATAGGTCAGAAATAGTAAGCTCAAGGCCCAGAGGCTGGG  898

seq1  CGCTGCAGAGGCCCTGGGCCATGTCAGAAGGTTGGAAAAAGGTGACCAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCAGAGGCCCTGGGCCATGTCAGAAGGTTGGAAAAAGGTGACCAGA  948

seq1  GTGGAGGATGTTGGCACTGGGTATCTGTTTGCTTGCCTGCCTTCTTGCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGATGTTGGCACTGGGTATCTGTTTGCTTGCCTGCCTTCTTGCTT  998

seq1  GCCTGTGACTTACTCTGTAGCCAGACTAGCCTGGAATTC  1033
      |||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGACTTACTCTGTAGCCAGACTAGCCTGGAATTC  1037

seq1: chr7_107521052_107522078
seq2: B6Ng01-292K16.g_65_1111

seq1  GAATTCTAAGGAGACTTCCACCCGCTCCGGTTAAACAAAACAAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGAGACTTCCACCCGCTCCGGTTAAACAAAACAAAACAAAA  50

seq1  CAAAAGAGGACGGAAGAGAGACTAACTAGGGAACCAGAAAGTTAAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGGACGGAAGAGAGACTAACTAGGGAACCAGAAAGTTAAGAGAA  100

seq1  TTTTTTTTTTTTTTAAAGAATGGAAAGGAAGTAGCGCCTGAGGGTCGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTAAAGAATGGAAAGGAAGTAGCGCCTGAGGGTCGATA  150

seq1  AATGAGGCAAGTGAGGATTAATAGATACGGATAGGAGAACAACAAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGCAAGTGAGGATTAATAGATACGGATAGGAGAACAACAAAATTA  200

seq1  AACGTGCTCTTTTTACGACAGGGATACACGTATGTGTGTTAGAGGTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGCTCTTTTTACGACAGGGATACACGTATGTGTGTTAGAGGTATTC  250

seq1  GGAGTAGGGGGAAGGGACATAACTCTGTCCGGAAAAACCTTAGATGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGGGGGAAGGGACATAACTCTGTCCGGAAAAACCTTAGATGGTGA  300

seq1  AAGGGTGTGTGATAGAGGACATCGTGAAACCTGTAACCCAAGCTTACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTGTGATAGAGGACATCGTGAAACCTGTAACCCAAGCTTACTCA  350

seq1  AAAAGCAAATAAAACCACTTATATATATATATACCCTTCTACTTCTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAATAAAACCACTTATATATATATATACCCTTCTACTTCTCTGA  400

seq1  TTTTTTCCTTGGGAAGCGATTGCGCTTCATAAGAATATACTGAGATCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTTGGGAAGCGATTGCGCTTCATAAGAATATACTGAGATCTCA  450

seq1  TCAGGAATCAATACAAGGAGTTTTTTCAACTAAAACAGTTTGTGTCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATCAATACAAGGAGTTTTTTCAACTAAAACAGTTTGTGTCCTGT  500

seq1  AGCATGAAGAAAAAGATCTACCATAAAGCGCAGGGATAATTCGTTGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAAGAAAAAGATCTACCATAAAGCGCAGGGATAATTCGTTGAAAT  550

seq1  GGAAACATATGTGCATATATGGACTGCTCCTCACTTAGAATGACTTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATATGTGCATATATGGACTGCTCCTCACTTAGAATGACTTGAAT  600

seq1  CCAACTTAAATCCTCTTAGTTATCCAGCTCCTATAAGGGGGCCCTATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTAAATCCTCTTAGTTATCCAGCTCCTATAAGGGGGCCCTATGAA  650

seq1  CCCCAGGCTGGCCTTGAACTTGATCCGCCTGCAGAAAAACTCTTGGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGCTGGCCTTGAACTTGATCCGCCTGCAGAAAAACTCTTGGTTTT  700

seq1  TTTTGTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTTAAGTCTTCTCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTTAAGTCTTCTCTAAA  750

seq1  TCTTTCAGAAAAGGTACTGACTGAAAGGAAAGCCAGAGTTGTAACTGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGAAAAGGTACTGACTGAAAGGAAAGCCAGAGTTGTAACTGATC  800

seq1  GCTTCATTTACATATTATTCATCACCTTTCTGAACTCTAGTAAGATTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTTACATATTATTCATCACCTTTCTGAACTCTAGTAAGATTTGA  850

seq1  CGTTAACATTTT-GAACCCA-GAACCAAA-GGTA-GCAGCAAACCTAAAA  896
      |||||||||||| ||||||| |||||||| |||| |||||||||||||||
seq2  CGTTAACATTTTGGAACCCAGGAACCAAAGGGTAGGCAGCAAACCTAAAA  900

seq1  ATGTTAGTCTCTGT-CCTTGACTGTATGG--TCTTGACAG-CAAAGACAA  942
      |||||||||||||| ||||||||||||||   |||||||| |||||||||
seq2  ATGTTAGTCTCTGTCCCTTGACTGTATGGGTCCTTGACAGCCAAAGACAA  950

seq1  -TTTAAGAGTG-AGATAAAGAGCCTGCTG--TGGTGGG-CTAGCCTTTAA  987
       |||||||||| |||  ||||||||||||   |||||| |||||||||| 
seq2  TTTTAAGAGTGAAGAATAAGAGCCTGCTGGTGGGTGGGCCTAGCCTTTAT  1000

seq1  GCCC-AGT-ACTT-GGGAGGCAGAGGC-AGGCA--GATC-TTTGTGA  1027
      |||| ||| |||| ||||||||||||| |||||   ||| |||||||
seq2  GCCCAAGTAACTTGGGGAGGCAGAGGCTAGGCATGAATCTTTTGTGA  1047