BAC Information

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BAC

Clone NameB6Ng01-293E04
Chromosome7 (Build37)
Map Location 13,103,421 - 13,104,538
singlet/doubletsinglet
Overlap gene2900092C05Rik
Upstream geneZscan4-ps2, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606
Downstream geneEG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293E04.bB6Ng01-293E04.g
ACCGA089686GA089687
length1,119986
definitionB6Ng01-293E04.b B6Ng01-293E04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatgcagaggtacattggaagcacatcatgggtcagaatgtggc
agactacatgtgctataagaaacacttctctcagtacatcaaaaacaaca
taactctagacatggagatgtataagaaagttcatgctgatatctgagag
aatccagtctatgtgaagaagcccaagagagaagtaaagaaaaagaggtg
aaatcatcccaaaatgtctcttgcccagaaaaaagactgggttgctcaaa
agaaggcaagcttcctcagagctcaggaacaggctgctgaaagctaaagc
aattttctatgaagatgtttttcataaagacaataaacatattgatcaaa
caaaaaaagttttcaatcagcctttgtcatctcagcttctttctaaaaaa
aaaaaaaaaaaaaaaaaaaaagattttatttttattttcacaagcaaaac
taaggcatgataagaagcctgtaagtcaagtagtttgaataatttcagtt
ggatcaagggctgttccgagtttatccagtgctgggccctggagtgataa
ggacagctgcacagtagtcatctacagtctaaagacagttactcactgga
ttgagttgttttctttgcacataaagatgagcttttccatctttagaagt
taactgatcttgttctggtggtgtatgcaggatcaggaagaccctcaaat
gtcgaagtatcaaagtacataaataatagtgaatagatccatcagtccca
aacgcactgctaatcttaaagcatagctatgattgcgtttacttgttcat
gccactaccaaagcataaagctttgcttagaatcaggatgtgagaaggct
tcgattctcattttttggcacaaaacctgtttttcagttagtgctagtgg
tttgctgaagcatgggcttcagctctcagctgtaggttctacagctagag
gaaggaagtagttctccaccacaactgcttggggtcatgaacactctctt
ggagctcttggctgttgtttatatggagatgtgttactcactcataataa
gaagaaacattgtgaagcatcaacactgattcggagttttcagctataag
ttgaaagtggcaggatgtt
gaattctgacacacccaggatctcaggataacaggatcctagaatcacag
gatcatagagacagctgaactctgcagagttctgacacaaccaggatcac
aggaaggacaggctacagtcagatatagagggggcaggtagcactaggaa
aaccagatggcaggaggcaagcatatatgaacttaagcaacagaaaccac
ggttacttggcatcatcagaagccaattctcccaccgtagcaagtcctgg
atacaccatcacaccagaaaagcaaattaggatgtaaaatcacttctttt
ttttccattttttattaggtatttagctcatttacatttccaatgctata
ccaaaagtcccccataccccccccactcccctacccacccactccccctt
tttggccctggcattcccctgtactggggcatataaagtttgcaagtcca
atgggcctctctttccagtgatggccgactagaccatcttttgatacata
tgcagctagagacaagagctccggggtactggttagttcatattgttgtt
ccacctatagggttgcagttccctttagttcattgggtactttctctagt
tcctccattgggggccctgtggtccattcaatagctgactgtgagcatcc
acttctgcgtttgctaggtcctggcatagtctcacaagagacagctatat
ctgggtcctttcagcaaaatcttgctagtgtatgcaatggtgtcagcgtt
tggaagctgatcatgagatggatctctggatatggcaatcactagatggt
ccatcctttcgtcatacttccaaactttgtctctgttactccttccatgg
gtgtttttgtttcctattctaagaaggggcaaagtgtccacactttgggt
cttcgttcttcttgagtttaatgtttttagcaatttatatcttatatctt
ggggtatcccagttttctggctattatccacttatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_13103421_13104538
seq2: B6Ng01-293E04.b_49_1167

seq1  GAATTCAATGCAGAGGTACATTGGAAGCACATCATGGGTCAGAATGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCAGAGGTACATTGGAAGCACATCATGGGTCAGAATGTGGC  50

seq1  AGACTACATGTGCTATAAGAAACACTTCTCTCAGTACATCAAAAACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACATGTGCTATAAGAAACACTTCTCTCAGTACATCAAAAACAACA  100

seq1  TAACTCTAGACATGGAGATGTATAAGAAAGTTCATGCTGATATCTGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTAGACATGGAGATGTATAAGAAAGTTCATGCTGATATCTGAGAG  150

seq1  AATCCAGTCTATGTGAAGAAGCCCAAGAGAGAAGTAAAGAAAAAGAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGTCTATGTGAAGAAGCCCAAGAGAGAAGTAAAGAAAAAGAGGTG  200

seq1  AAATCATCCCAAAATGTCTCTTGCCCAGAAAAAAGACTGGGTTGCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATCCCAAAATGTCTCTTGCCCAGAAAAAAGACTGGGTTGCTCAAA  250

seq1  AGAAGGCAAGCTTCCTCAGAGCTCAGGAACAGGCTGCTGAAAGCTAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAAGCTTCCTCAGAGCTCAGGAACAGGCTGCTGAAAGCTAAAGC  300

seq1  AATTTTCTATGAAGATGTTTTTCATAAAGACAATAAACATATTGATCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTATGAAGATGTTTTTCATAAAGACAATAAACATATTGATCAAA  350

seq1  CAAAAAAAGTTTTCAATCAGCCTTTGTCATCTCAGCTTCTTTCTAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAGTTTTCAATCAGCCTTTGTCATCTCAGCTTCTTTCTAAAAAA  400

seq1  AAAAAAAAAAAAAAAAAAAAAGATTTTATTTTTATTTTCACAAGCAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAGATTTTATTTTTATTTTCACAAGCAAAAC  450

seq1  TAAGGCATGATAAGAAGCCTGTAAGTCAAGTAGTTTGAATAATTTCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCATGATAAGAAGCCTGTAAGTCAAGTAGTTTGAATAATTTCAGTT  500

seq1  GGATCAAGGGCTGTTCCGAGTTTATCCAGTGCTGGGCCCTGGAGTGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGGGCTGTTCCGAGTTTATCCAGTGCTGGGCCCTGGAGTGATAA  550

seq1  GGACAGCTGCACAGTAGTCATCTACAGTCTAAAGACAGTTACTCACTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTGCACAGTAGTCATCTACAGTCTAAAGACAGTTACTCACTGGA  600

seq1  TTGAGTTGTTTTCTTTGCACATAAAGATGAGCTTTTCCATCTTTAGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTGTTTTCTTTGCACATAAAGATGAGCTTTTCCATCTTTAGAAGT  650

seq1  TAACTGATCTTGTTCTGGTGGTGTATGCAGGATCAGGAAGACCCTCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGATCTTGTTCTGGTGGTGTATGCAGGATCAGGAAGACCCTCAAAT  700

seq1  GTCGAAGTATCAAAGTACATAAATAATAGTGAATAGATCCATCAGTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAAGTATCAAAGTACATAAATAATAGTGAATAGATCCATCAGTCCCA  750

seq1  AACGCACTGCTAATCTTAAAGCATAGCTATGATTGCG-TTACTTGTTCAT  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACGCACTGCTAATCTTAAAGCATAGCTATGATTGCGTTTACTTGTTCAT  800

seq1  GCCACTACCAAAGCATAAAGCTTTGCTTAGAATCAGGATGTGAGAAGGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTACCAAAGCATAAAGCTTTGCTTAGAATCAGGATGTGAGAAGGCT  850

seq1  TCGATTCTCATTTTTTGGCAC-AAACCTGTTTTTCAGTTAGTGCTAGTGG  898
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCGATTCTCATTTTTTGGCACAAAACCTGTTTTTCAGTTAGTGCTAGTGG  900

seq1  TTTGCTGAAGCATGGGCTTCAGCTCTCAGCTGTAGGTTCTACAGCTAGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAAGCATGGGCTTCAGCTCTCAGCTGTAGGTTCTACAGCTAGAG  950

seq1  GAAGGAAGTAGTTCTCCACCACAACTGCTTGGGGTCATGAACACTCTCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGTAGTTCTCCACCACAACTGCTTGGGGTCATGAACACTCTCTT  1000

seq1  GGAGCTCTTGGCTGTTGTTTATATGGGAAGATGTGTTACTCACTCATAAT  1048
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  GGAGCTCTTGGCTGTTGTTTATATGG--AGATGTGTTACTCACTCATAAT  1048

seq1  AAG-AGAAACATGTTGAAGCATC-ACACTGA-TCGAGTTTTTCAGCTATA  1095
      ||| ||||||||  ||||||||| ||||||| |||   ||||||||||||
seq2  AAGAAGAAACATTGTGAAGCATCAACACTGATTCGGAGTTTTCAGCTATA  1098

seq1  AGGTTGAAAGTGGGCAAGATGTT  1118
      | ||||||||| |||| ||||||
seq2  A-GTTGAAAGT-GGCAGGATGTT  1119