BAC Information

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BAC

Clone NameB6Ng01-294A04
Chromosome7 (Build37)
Map Location 52,363,672 - 52,530,384
singlet/doubletdoublet
Overlap geneRps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16
Upstream geneKlk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt
Downstream gene1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294A04.bB6Ng01-294A04.g
ACCGA090251GA090252
length1,189968
definitionB6Ng01-294A04.b B6Ng01-294A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,529,204 - 52,530,384)(52,363,672 - 52,364,640)
sequence
gaattcacagggtaggaaaatcttgtgtggatatttactgacattaagta
agtgtggtttgtttgtatataatatttccttgttaaattttaagagggtg
tagaagcaaaccaaaagctaaattgatcaagttggtatctgcttcaaaat
ggtggagaggcatgtggaaggcagcttggtctcgtggagagacaggccag
gtaaggagcacatggtgagccctcaggctcctcctctagagagttcaaaa
acatcagaatgacagtgagtgaagccagaggccatgaggccttgccaggt
cctagccagctcactgaaccaacccagagcccctcatgatggtgactatc
ccaccactatgaacaagggggacatgagaagacaaagggagggctcggtc
atacccacaagtgctgggaaattggcgctggacaagggggatccagagtt
atccaggcacctcagacagaacctgaccttcctgttactcagccacaccc
actgcagcagcctggaatattcccaggtagtcttgcagctgggtgcccaa
gggccagggagcaagtaagtggctgcaggggagaaaacttgagtgtgagg
agactcagcaaggcctgctgcactcaaatagcttctccaaacccttaagg
tctgccttgtaatcctattaccatgattgcaactccaaagctggaactgg
ggtgaggcagaaggaaggatggtgaagaaatagactctgacccaggtaga
aggctccaccttcatttggatctagcagggaggagcgacttggtcccttg
agctctctacagaggccttccacatctctgtcttccgaggtccaagtgtg
agctgggaaccccaagtcccatgaccttgggaaccccaagtcccatgacc
ttgtcacatctggagaacatccattctctggctctctgaggatgcactcg
ttgctacccaggatctctctgggctctggtcacttggaaagtaatgttag
ttcagctctggaaccacctggccctgacttagctgggcaaggctcagcca
aatcaatcccaccaggaaaacagcgaatgtcctcttttccagcaatggga
acccctgggtgaaattcagccacacaagctctatgacctcagcctggtgg
tgtacgaagggcgccacatggtccaatggtgttggaaag
gaattcctggggtgagactcagtttaccaagcttgttcagatctttaccc
tctttacctaactctgagccatcttgctggccccagcttttgttgttgtt
ttttttgtttttttgtttttccgttttatgaaacatggtttctctgtgta
gccctggccgacctggcactcactttgtagaccaggctggccttgaactc
agaaatccacctgcctctgcctcccaagtgctggaattaaaggtgtgcgc
caccactgcccggcggctccatcttttttaatcccttttatctatctatc
tatctatctatctatctatctatctatctatctatctatctatctaccta
cctatctgttttgagacagggtatcactatgtatccctggatggcttgga
actctctctgtgggccagaccagccttaaaaatctcaatgattggcctga
ttctgcctctattgcacaggaattaaagacaagcaccaccatgtctggct
acgcctcactcctttatagaacatctttctgctatgcaaaatggccaggg
aatctttgggtatgtgtccccttccttgtggctgacctgttccaaatgcc
aaccagcttgttatccctggtccccacagtctcctgtgcagccagaccac
tggacatagttttccagttcagtttctctctctttccttctccccccacc
ccatttttattgtttgactataggggtgagacataccagccatgaagcat
gcgtacaggccagaaaatagcttacaggagtcagtcctcccctccagaag
cctgagtttagctattttatgggctatcctttcttccatccttctccacc
atttttcttccactttccaccccctaacactggatagaaagagaaaaagc
atagaggcgagagaaaagagattcctgataaagccaggggtggggaaagg
ggcaatgttatttgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52529204_52530384
seq2: B6Ng01-294A04.b_47_1235 (reverse)

seq1  CTTTCCAACACTA-TGGACCATGT-GCG-CCTCTGTACACAACCAGGCTG  47
      ||||||||||| | |||||||||| ||| |||  |||||| |||||||||
seq2  CTTTCCAACACCATTGGACCATGTGGCGCCCTTCGTACACCACCAGGCTG  50

seq1  AGGTCCAACAGAGC-TGTGTGGCTGAAATTCA-CCAAGGGTTCCCATTGC  95
      |||||  | ||||| |||||||||||| |||| ||| |||||||||||||
seq2  AGGTC--ATAGAGCTTGTGTGGCTGAATTTCACCCAGGGGTTCCCATTGC  98

seq1  TTGAAAAGA-GACA-TCGCTGGTTTCCTGGTGGGATTGA-TTGGCTGAGC  142
      | ||||||| |||| |||||| ||||||||||||||||| ||||||||||
seq2  TGGAAAAGAGGACATTCGCTGTTTTCCTGGTGGGATTGATTTGGCTGAGC  148

seq1  C-TGCCCAGCTAAGTCA-GGCCAGGTGGTTCCAGAGCTGAACTAACATTA  190
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTGCCCAGCTAAGTCAGGGCCAGGTGGTTCCAGAGCTGAACTAACATTA  198

seq1  CTTTCCAAGTGACCAGAGCCCAGAGAGATCCTGGGTAGCAACGAGTGCAT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAGTGACCAGAGCCCAGAGAGATCCTGGGTAGCAACGAGTGCAT  248

seq1  CCTCAGAGAGCCAGAGAATGGATGTTCTCCAGATGTGACAAGGTCATGGG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGAGCCAGAGAATGGATGTTCTCCAGATGTGACAAGGTCATGGG  298

seq1  ACTTGGGGTTCCCAAGGTCATGGGACTTGGGGTTCCCAGCTCACACTTGG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGGTTCCCAAGGTCATGGGACTTGGGGTTCCCAGCTCACACTTGG  348

seq1  ACCTCGGAAGACAGAGATGTGGAAGGCCTCTGTAGAGAGCTCAAGGGACC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGGAAGACAGAGATGTGGAAGGCCTCTGTAGAGAGCTCAAGGGACC  398

seq1  AAGTCGCTCCTCCCTGCTAGATCCAAATGAAGGTGGAGCCTTCTACCTGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGCTCCTCCCTGCTAGATCCAAATGAAGGTGGAGCCTTCTACCTGG  448

seq1  GTCAGAGTCTATTTCTTCACCATCCTTCCTTCTGCCTCACCCCAGTTCCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTCTATTTCTTCACCATCCTTCCTTCTGCCTCACCCCAGTTCCA  498

seq1  GCTTTGGAGTTGCAATCATGGTAATAGGATTACAAGGCAGACCTTAAGGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGAGTTGCAATCATGGTAATAGGATTACAAGGCAGACCTTAAGGG  548

seq1  TTTGGAGAAGCTATTTGAGTGCAGCAGGCCTTGCTGAGTCTCCTCACACT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGAAGCTATTTGAGTGCAGCAGGCCTTGCTGAGTCTCCTCACACT  598

seq1  CAAGTTTTCTCCCCTGCAGCCACTTACTTGCTCCCTGGCCCTTGGGCACC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTCTCCCCTGCAGCCACTTACTTGCTCCCTGGCCCTTGGGCACC  648

seq1  CAGCTGCAAGACTACCTGGGAATATTCCAGGCTGCTGCAGTGGGTGTGGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAAGACTACCTGGGAATATTCCAGGCTGCTGCAGTGGGTGTGGC  698

seq1  TGAGTAACAGGAAGGTCAGGTTCTGTCTGAGGTGCCTGGATAACTCTGGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAACAGGAAGGTCAGGTTCTGTCTGAGGTGCCTGGATAACTCTGGA  748

seq1  TCCCCCTTGTCCAGCGCCAATTTCCCAGCACTTGTGGGTATGACCGAGCC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTGTCCAGCGCCAATTTCCCAGCACTTGTGGGTATGACCGAGCC  798

seq1  CTCCCTTTGTCTTCTCATGTCCCCCTTGTTCATAGTGGTGGGATAGTCAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTGTCTTCTCATGTCCCCCTTGTTCATAGTGGTGGGATAGTCAC  848

seq1  CATCATGAGGGGCTCTGGGTTGGTTCAGTGAGCTGGCTAGGACCTGGCAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGAGGGGCTCTGGGTTGGTTCAGTGAGCTGGCTAGGACCTGGCAA  898

seq1  GGCCTCATGGCCTCTGGCTTCACTCACTGTCATTCTGATGTTTTTGAACT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCATGGCCTCTGGCTTCACTCACTGTCATTCTGATGTTTTTGAACT  948

seq1  CTCTAGAGGAGGAGCCTGAGGGCTCACCATGTGCTCCTTACCTGGCCTGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGGAGGAGCCTGAGGGCTCACCATGTGCTCCTTACCTGGCCTGT  998

seq1  CTCTCCACGAGACCAAGCTGCCTTCCACATGCCTCTCCACCATTTTGAAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACGAGACCAAGCTGCCTTCCACATGCCTCTCCACCATTTTGAAG  1048

seq1  CAGATACCAACTTGATCAATTTAGCTTTTGGTTTGCTTCTACACCCTCTT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACCAACTTGATCAATTTAGCTTTTGGTTTGCTTCTACACCCTCTT  1098

seq1  AAAATTTAACAAGGAAATATTATATACAAACAAACCACACTTACTTAATG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAACAAGGAAATATTATATACAAACAAACCACACTTACTTAATG  1148

seq1  TCAGTAAATATCCACACAAGATTTTCCTACCCTGTGAATTC  1181
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAATATCCACACAAGATTTTCCTACCCTGTGAATTC  1189

seq1: chr7_52363672_52364640
seq2: B6Ng01-294A04.g_69_1036

seq1  GAATTCCTGGGGTGAGACTCAGTTTACCAAGCTTGTTCAGATCTTTACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGGTGAGACTCAGTTTACCAAGCTTGTTCAGATCTTTACCC  50

seq1  TCTTTACCTAACTCTGAGCCATCTTGCTGGCCCCAGCTTTTGTTGTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACCTAACTCTGAGCCATCTTGCTGGCCCCAGCTTTTGTTGTTGTT  100

seq1  TTTTTTGTTTTTTTGTTTTTCCGTTTTATGAAACATGGTTTCTCTGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTTTGTTTTTCCGTTTTATGAAACATGGTTTCTCTGTGTA  150

seq1  GCCCTGGCCGACCTGGCACTCACTTTGTAGACCAGGCTGGCCTTGAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCCGACCTGGCACTCACTTTGTAGACCAGGCTGGCCTTGAACTC  200

seq1  AGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGTGTGCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGTGTGCGC  250

seq1  CACCACTGCCCGGCGGCTCCATCTTTTTTAATCCCTTTTATCTATCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGCCCGGCGGCTCCATCTTTTTTAATCCCTTTTATCTATCTATC  300

seq1  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACCTA  350

seq1  CCTATCTGTTTTGAGACAGGGTATCACTATGTATCCCTGGATGGCTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTGTTTTGAGACAGGGTATCACTATGTATCCCTGGATGGCTTGGA  400

seq1  ACTCTCTCTGTGGGCCAGACCAGCCTTAAAAATCTCAATGATTGGCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCTGTGGGCCAGACCAGCCTTAAAAATCTCAATGATTGGCCTGA  450

seq1  TTCTGCCTCTATTGCACAGGAATTAAAGACAAGCACCACCATGTCTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTCTATTGCACAGGAATTAAAGACAAGCACCACCATGTCTGGCT  500

seq1  ACGCCTCACTCCTTTATAGAACATCTTTCTGCTATGCAAAATGGCCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTCACTCCTTTATAGAACATCTTTCTGCTATGCAAAATGGCCAGGG  550

seq1  AATCTTTGGGTATGTGTCCCCTTCCTTGTGGCTGACCTGTTCCAAATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGGGTATGTGTCCCCTTCCTTGTGGCTGACCTGTTCCAAATGCC  600

seq1  AACCAGCTTGTTATCCCTGGTCCCCACAGTCTCCTGTGCAGCCAGACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTTGTTATCCCTGGTCCCCACAGTCTCCTGTGCAGCCAGACCAC  650

seq1  TGGACATAGTTTTCCAGTTCAGTTTCTCTCTCTTTCCTTCTCCCCCCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATAGTTTTCCAGTTCAGTTTCTCTCTCTTTCCTTCTCCCCCCACC  700

seq1  CCATTTTTATTGTTTGACTATAGGGGTGAGACATACCAGCCATGAAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTATTGTTTGACTATAGGGGTGAGACATACCAGCCATGAAGCAT  750

seq1  GCGTACAGGCCAGAAAATAGCTTACAGGAGTCAGTCCTCCCCTCCAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACAGGCCAGAAAATAGCTTACAGGAGTCAGTCCTCCCCTCCAGAAG  800

seq1  CCTGAGTTTAGCTATTTTATGGGCTATCCTTTCTTCCATCCTTCTCCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTTAGCTATTTTATGGGCTATCCTTTCTTCCATCCTTCTCCACC  850

seq1  ATTTTTCTTCCACTTTCCACCCCCTAACACTGGATAGAAAGAGAAAAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTCCACTTTCCACCCCCTAACACTGGATAGAAAGAGAAAAAGC  900

seq1  ATAGAGGCGAGAGAAAAGAGATTCCTGAATAAAGCCAGGGGTGGGGAAGG  950
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  ATAGAGGCGAGAGAAAAGAGATTCCTG-ATAAAGCCAGGGGTGGGGAAAG  949

seq1  GGGCAATGTTATTTGTTTG  969
      |||||||||||||||||||
seq2  GGGCAATGTTATTTGTTTG  968