BAC Information

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BAC

Clone NameB6Ng01-295F10
Chromosome7 (Build37)
Map Location 53,002,953 - 53,170,296
singlet/doubletdoublet
Overlap geneSult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143
Upstream geneZfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4
Downstream geneEmp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295F10.bB6Ng01-295F10.g
ACCGA091230GA091231
length931799
definitionB6Ng01-295F10.b B6Ng01-295F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,002,953 - 53,003,876)(53,169,500 - 53,170,296)
sequence
gaattctgatggactcttttgagctgtcttgtgacctgtgagcacccgcc
actgcatgcatacatatgtaaatggtgggtgactcctgtgactgccaagg
ttaaccgctcactttcacattcgccatgcatctgtgcacctgaacacaca
cacacacacacacacacacacacacacacacacggagacacacacacaca
gagacacaccacacacagagagacatacagatacaccacacacataccac
acacacagacacacacatacacaccacacacacagatataccacacacag
acacacacagaggcacacagacacaccacacacagagacatacagacaca
cacatatacacactcagagacatacagatacacacacacatacacacaca
gagacatacagacacagacacacacagaggcacacagacacaccacacac
agagacatacagacacacacacatatacactcagagacatacagacacac
acacacatacacacacagagacatacagacacacacaccacacagacaca
cacaaagacacacagacaagtgccaaggtttgggggaggcaaccatgagc
cccagacagagtagagtaggagatggctctgcactcgcctggcttccact
ggagaacacccatttccgtgggattcctgtccagtgactgaatcatagga
acaggaagcaatgcaaccacattctgaggaagcagggcacagttgcatgc
tgtcggggaagatgggtaagtccaaggcctcggaagggcttttgggaatc
tcccacggacacacgtgtgttcacaccttcctgagcgtgacatgcttcct
ctgacatcaattttaactgtattgctgtagttttgtttccttgaggacaa
ggcctcactagttagcccaggttcctactca
gaattcttcagtctcctatcttcatctgcccagactgtagtgcagagttt
tcagggctaaaggagcatggcacagtggtgtgcaaacatgctccccaact
ccccatgccctattctggcagccctaccttctatgggtcacaggccacag
cctaccaccatcctcatccctcttgcctggccagcttgtctgtccctcac
ccatcctgatgcctgcttcttccctggctccatcttcctatcccctgctc
atagcctccctagctcagaatttgaaactctacaccccagtcctagtgca
gcccacatagtaaacactgctgtacccaaatatgtgccccagcctccggc
cccttggatcatgggtctttaaacgagcaacagaccccagtctgttctta
gaaaacactgcctcatgctcaaggctggccagagagtggatgcaccctca
ggctcctacagcccatgccacctaacctgtgtccacaggcctctgccccc
taacagagcctacattcccagaatccaagctgccctggcctgctctgcac
agggaaggcagactgtggtagggtgtccagagacccattctagccctagt
gatctaggaaagtctcagggacctgatggcctctggccaagagatgaggg
acgcagagggtgaccggcccagtgagaaagaatcagtcagagcggacgga
acgtgcaaatgcagagtctagggaagcaggagaggaggttaggtgtcaca
aacacacagagcagagactggggggtcaggtgggatagtggttggtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_53002953_53003876
seq2: B6Ng01-295F10.b_49_979

seq1  GAATTCTGATGGACTCTTTTGAGCTGTCTTGTGACCTGTGAGCACCCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGGACTCTTTTGAGCTGTCTTGTGACCTGTGAGCACCCGCC  50

seq1  ACTGCATGCATACATATGTAAATGGTGGGTGACTCCTGTGACTGCCAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATGCATACATATGTAAATGGTGGGTGACTCCTGTGACTGCCAAGG  100

seq1  TTAACCGCTCACTTTCACATTCGCCATGCATCTGTGCACCTGAACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCGCTCACTTTCACATTCGCCATGCATCTGTGCACCTGAACACACA  150

seq1  CACACACACACACACACACACACACACACACACGGAGACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACGGAGACACACACACACA  200

seq1  GAGACACACCACACACAGAGAGACATACAGATACACCACACACATACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACACCACACACAGAGAGACATACAGATACACCACACACATACCAC  250

seq1  ACACACAGACACACACATACACACCACACACACAGATATACCACACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGACACACACATACACACCACACACACAGATATACCACACACAG  300

seq1  ACACACACAGAGGCACACAGACACACCACACACAGAGACATACAGACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGAGGCACACAGACACACCACACACAGAGACATACAGACACA  350

seq1  CACATATACACACTCAGAGACATACAGATACACACACACATACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATACACACTCAGAGACATACAGATACACACACACATACACACACA  400

seq1  GAGACATACAGACACAGACACACACAGAGGCACACAGACACACCACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATACAGACACAGACACACACAGAGGCACACAGACACACCACACAC  450

seq1  AGAGACATACAGACACACACACATATACACTCAGAGACATACAGACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATACAGACACACACACATATACACTCAGAGACATACAGACACAC  500

seq1  ACACACATACACACACAGAGACATACAGACACACACACCACACAGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACACACACAGAGACATACAGACACACACACCACACAGACACA  550

seq1  CACAAAGACACACAGACAAGTGCCAAGGTTTGGGGGAGGCAACCATGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGACACACAGACAAGTGCCAAGGTTTGGGGGAGGCAACCATGAGC  600

seq1  CCCAGACAGAGTAGAGTAGGAGATGGCTCTGCACTCGCCTGGCTTCCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACAGAGTAGAGTAGGAGATGGCTCTGCACTCGCCTGGCTTCCACT  650

seq1  GGAGAACACCCATTTCCGTGGGATTCCTGTCCAGTGACTGAATCATAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACACCCATTTCCGTGGGATTCCTGTCCAGTGACTGAATCATAGGA  700

seq1  ACAGGAAGCAATGCAACCACATTCTGAGGAAGCAGGGCACAG-TGCAGGC  749
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  ACAGGAAGCAATGCAACCACATTCTGAGGAAGCAGGGCACAGTTGCATGC  750

seq1  TGTCGGGGAAGATGGGTAAGTCCAAGGCCTCGGAAGGGC-TTTAGGAATC  798
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  TGTCGGGGAAGATGGGTAAGTCCAAGGCCTCGGAAGGGCTTTTGGGAATC  800

seq1  TCCCACGGACACACGTGTG-TCACACC-TCCTGAGGCGTGACATGCTTCC  846
      ||||||||||||||||||| ||||||| |||||| |||||||||||||||
seq2  TCCCACGGACACACGTGTGTTCACACCTTCCTGA-GCGTGACATGCTTCC  849

seq1  TCTGACATCAATTTT-ACTGTATTGCTGTAGTTTTGTTT-CTTGA-GACA  893
      ||||||||||||||| ||||||||||||||||||||||| ||||| ||||
seq2  TCTGACATCAATTTTAACTGTATTGCTGTAGTTTTGTTTCCTTGAGGACA  899

seq1  AGGCCTCACTAAGTAGCCCAGGTT-CTACTCA  924
      |||||||||||  ||||||||||| |||||||
seq2  AGGCCTCACTAGTTAGCCCAGGTTCCTACTCA  931

seq1: chr7_53169500_53170296
seq2: B6Ng01-295F10.g_73_871 (reverse)

seq1  TTTACC-ACCACTATCCCACCTGA-CCCCCAGTCTCTGCTCTGTGTGTTT  48
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTACCAACCACTATCCCACCTGACCCCCCAGTCTCTGCTCTGTGTGTTT  50

seq1  GTGACACCTAACCTCCTCTCCTGCTTCCCTAGACTCTGCATTTGCACGTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACCTAACCTCCTCTCCTGCTTCCCTAGACTCTGCATTTGCACGTT  100

seq1  CCGTCCGCTCTGACTGATTCTTTCTCACTGGGCCGGTCACCCTCTGCGTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCGCTCTGACTGATTCTTTCTCACTGGGCCGGTCACCCTCTGCGTC  150

seq1  CCTCATCTCTTGGCCAGAGGCCATCAGGTCCCTGAGACTTTCCTAGATCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTCTTGGCCAGAGGCCATCAGGTCCCTGAGACTTTCCTAGATCA  200

seq1  CTAGGGCTAGAATGGGTCTCTGGACACCCTACCACAGTCTGCCTTCCCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCTAGAATGGGTCTCTGGACACCCTACCACAGTCTGCCTTCCCTG  250

seq1  TGCAGAGCAGGCCAGGGCAGCTTGGATTCTGGGAATGTAGGCTCTGTTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCAGGCCAGGGCAGCTTGGATTCTGGGAATGTAGGCTCTGTTAG  300

seq1  GGGGCAGAGGCCTGTGGACACAGGTTAGGTGGCATGGGCTGTAGGAGCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAGGCCTGTGGACACAGGTTAGGTGGCATGGGCTGTAGGAGCCT  350

seq1  GAGGGTGCATCCACTCTCTGGCCAGCCTTGAGCATGAGGCAGTGTTTTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGCATCCACTCTCTGGCCAGCCTTGAGCATGAGGCAGTGTTTTCT  400

seq1  AAGAACAGACTGGGGTCTGTTGCTCGTTTAAAGACCCATGATCCAAGGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGACTGGGGTCTGTTGCTCGTTTAAAGACCCATGATCCAAGGGG  450

seq1  CCGGAGGCTGGGGCACATATTTGGGTACAGCAGTGTTTACTATGTGGGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGGCTGGGGCACATATTTGGGTACAGCAGTGTTTACTATGTGGGCT  500

seq1  GCACTAGGACTGGGGTGTAGAGTTTCAAATTCTGAGCTAGGGAGGCTATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGGACTGGGGTGTAGAGTTTCAAATTCTGAGCTAGGGAGGCTATG  550

seq1  AGCAGGGGATAGGAAGATGGAGCCAGGGAAGAAGCAGGCATCAGGATGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGATAGGAAGATGGAGCCAGGGAAGAAGCAGGCATCAGGATGGG  600

seq1  TGAGGGACAGACAAGCTGGCCAGGCAAGAGGGATGAGGATGGTGGTAGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGACAGACAAGCTGGCCAGGCAAGAGGGATGAGGATGGTGGTAGGC  650

seq1  TGTGGCCTGTGACCCATAGAAGGTAGGGCTGCCAGAATAGGGCATGGGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTGTGACCCATAGAAGGTAGGGCTGCCAGAATAGGGCATGGGGA  700

seq1  GTTGGGGAGCATGTTTGCACACCACTGTGCCATGCTCCTTTAGCCCTGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGAGCATGTTTGCACACCACTGTGCCATGCTCCTTTAGCCCTGAA  750

seq1  AACTCTGCACTACAGTCTGGGCAGATGAAGATAGGAGACTGAAGAATTC  797
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGCACTACAGTCTGGGCAGATGAAGATAGGAGACTGAAGAATTC  799