BAC Information

Click to search

BAC

Clone NameB6Ng01-295J21
Chromosome7 (Build37)
Map Location 66,441,398 - 66,519,165
singlet/doubletdoublet
Overlap geneUbe3a
Upstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818
Downstream geneLOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788, Snrpn, Snurf, EG664849
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295J21.bB6Ng01-295J21.g
ACCGA091438GA091439
length5071,178
definitionB6Ng01-295J21.b B6Ng01-295J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,441,398 - 66,441,909)(66,517,999 - 66,519,165)
sequence
attgtttctacgtgtcaagaagtagcatcttacaactctgcaccttaaga
tcccaggctatcccagcagctttgcctatgctacagtcactcaaagattt
tcttaaatacttcttctatttgtagtttctcattcccataggtcaggtct
ttgaggaaatggggcagcatcggaattcagaccatttgtaattgcaggaa
tttacattatataaaacataacaaaaactgacatatgggaattgtgtggg
tgtggggggggagcagaagaaaaagcgcccaatagaagtcacaaaaaata
agaaaccaacacattcatacactcaggaacaccacatagacactaaactg
aaagccataatatatatgaagaggacctagaagggattctgtgcattctg
cctcagtcttttctgacttcatatgattcttgatcatgttgatttagtga
gctttcttttctggtgtctacaacccctggttcttgtacactttttgcct
tcttttg

gaattctgaagtacatgtcaatgagaagtttagcaaagaaattgagactg
gtgctgggagggaggatgatggaaataaataaaataattaaaaatctcag
tggaaaccataaataatagaccaaatcaagtacaagacagaacagcagga
attgaagaaaaatctgtattcagacacacaacaacacaataagtaaacac
aaccaaaccttttagaacatgatcaaaatgaaactaaagaatacatggag
cagaaggaacttaaaagcactgagactaagtcaatgaaataacagcagaa
attttctaaaatatcgagaaagaaatgaacatctatacagaaagatgtgt
aaaacccaaataaatcatggacagaaagaattgctcctgagcacagtgta
gctcaaatcctaacactacaaagaaaataaaagtatcaacatactaacaa
aggtaaattcactgtaacatccaacctctcactagaaatttttaaagaca
aaaatcttttcaatgattactatatccaaagttatcttttaaatgtaata
taaaaactttccaaggtaggcataacataaggccacttgtgaccactaaa
ctacagtatacacttaaaggaaacttacacatagcagaatgatacaaaca
gaggagctcaaggaaaatgaattttgtaattctatatatgaaaaattaag
aaagaagcaactgtgtctacataagttaatgaaagaaaaacagaacaatg
aaagaaacaacaaaatataaatgtttttagcgttccatttatgagacaga
ttagccaaatgaattaaaagcaggatcaaattatttgttgtctataagaa
atgtatttcacttgaacagaagctaaaggaaaaaaaaaaaggagactgaa
aagtgagtggaaaatcaaaaaagaactgggactactgacataagtatatg
actgtatactataaaagaaaacaactgggctggagagatagctcagcggt
aaaagcacctactgctcttcaaaaggtccgagttcaaattccagcaacca
cagggtgctcacacatctgtaatgagatctgaacacttctcttcctgggt
ggtgtctgaatgaacagcttacagtgtacctaccgattaaatatgaagaa
attctctttaaaaatatatatttaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_66441398_66441909
seq2: B6Ng01-295J21.b_44_555

seq1  GAATTCATTGTTTCTACGTGTCAAGAAGTAGCATCTTACAACTCTGCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTCTACGTGTCAAGAAGTAGCATCTTACAACTCTGCACC  50

seq1  TTAAGATCCCAGGCTATCCCAGCAGCTTTGCCTATGCTACAGTCACTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATCCCAGGCTATCCCAGCAGCTTTGCCTATGCTACAGTCACTCAA  100

seq1  AGATTTTCTTAAATACTTCTTCTATTTGTAGTTTCTCATTCCCATAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCTTAAATACTTCTTCTATTTGTAGTTTCTCATTCCCATAGGTC  150

seq1  AGGTCTTTGAGGAAATGGGGCAGCATCGGAATTCAGACCATTTGTAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTGAGGAAATGGGGCAGCATCGGAATTCAGACCATTTGTAATTG  200

seq1  CAGGAATTTACATTATATAAAACATAACAAAAACTGACATATGGGAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTTACATTATATAAAACATAACAAAAACTGACATATGGGAATTG  250

seq1  TGTGGGTGTGGGGGGGGAGCAGAAGAAAAAGCGCCCAATAGAAGTCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGTGGGGGGGGAGCAGAAGAAAAAGCGCCCAATAGAAGTCACAA  300

seq1  AAAATAAGAAACCAACACATTCATACACTCAGGAACACCACATAGACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGAAACCAACACATTCATACACTCAGGAACACCACATAGACACT  350

seq1  AAACTGAAAGCCATAATATATATGAAGAGGACCTAGAAGGGATTCTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAAGCCATAATATATATGAAGAGGACCTAGAAGGGATTCTGTGC  400

seq1  ATTCTGCCTCAGTC-TCTCTGACTTCATATGATTCTTGATCATGTTGATT  449
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  ATTCTGCCTCAGTCTTTTCTGACTTCATATGATTCTTGATCATGTTGATT  450

seq1  TAGTGAGCTTTCTTTTCTTGGTGTCTACAACCCCTGGCTCTTGTACACTT  499
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TAGTGAGCTTTCTTTTC-TGGTGTCTACAACCCCTGGTTCTTGTACACTT  499

seq1  TTTGCCTTCTTTT  512
      |||||||||||||
seq2  TTTGCCTTCTTTT  512


seq1: chr7_66517999_66519165
seq2: B6Ng01-295J21.g_67_1244 (reverse)

seq1  TTTTTA---ATATATTTTTAAAGAGATTTATTTATTATT--ATATGTAAG  45
      ||||||   ||||||||||||||||| ||  ||  ||||  ||  ||| |
seq2  TTTTTAAATATATATTTTTAAAGAGAATTTCTTCATATTTAATCGGTAGG  50

seq1  TACACTGT-AGCTG-TCA-TCAGACA-CACC--AGAAGAG-AGTG-TCAG  87
      |||||||| ||||| ||| ||||||| ||||   |||||| |||| ||||
seq2  TACACTGTAAGCTGTTCATTCAGACACCACCCAGGAAGAGAAGTGTTCAG  100

seq1  ATCTCATTACAGATGGTTGTGAGCCACCCTGTGGTTGCTGGAATTTGAAC  137
      |||||||||||||||  |||||| ||||||||||||||||||||||||||
seq2  ATCTCATTACAGATG--TGTGAG-CACCCTGTGGTTGCTGGAATTTGAAC  147

seq1  TCGGGACCTTTGGAAGAGCAGTAGGTGCTTTTAACCGCTGAGCTATCTCT  187
      || |||||||| |||||||||||||||||||| |||||||||||||||||
seq2  TC-GGACCTTTTGAAGAGCAGTAGGTGCTTTT-ACCGCTGAGCTATCTCT  195

seq1  CCAGCCCAGTTGTTTTCTTTTATAGTATACAGTCATATACTTATGTCAGT  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAGTTGTTTTCTTTTATAGTATACAGTCATATACTTATGTCAGT  245

seq1  AGT-CCAGTTCTTTTTTGA-TTTCCACTCACTTTTCAGTCTCC-TTTTTT  284
      ||| ||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  AGTCCCAGTTCTTTTTTGATTTTCCACTCACTTTTCAGTCTCCTTTTTTT  295

seq1  TTTTCCTTTAGCTTCTGTTCAAGTGAAATACATTTCTTATAGACAACAAA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTAGCTTCTGTTCAAGTGAAATACATTTCTTATAGACAACAAA  345

seq1  TAATTTGATCCTGCTTTTAATTCATTTGGCTAATCTGTCTCATAAATGGA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGATCCTGCTTTTAATTCATTTGGCTAATCTGTCTCATAAATGGA  395

seq1  ACGCTAAAAACATTTATATTTTGTTGTTTCTTTCATTGTTCTGTTTTTCT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTAAAAACATTTATATTTTGTTGTTTCTTTCATTGTTCTGTTTTTCT  445

seq1  TTCATTAACTTATGTAGACACAGTTGCTTCTTTCTTAATTTTTCATATAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAACTTATGTAGACACAGTTGCTTCTTTCTTAATTTTTCATATAT  495

seq1  AGAATTACAAAATTCATTTTCCTTGAGCTCCTCTGTTTGTATCATTCTGC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACAAAATTCATTTTCCTTGAGCTCCTCTGTTTGTATCATTCTGC  545

seq1  TATGTGTAAGTTTCCTTTAAGTGTATACTGTAGTTTAGTGGTCACAAGTG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTAAGTTTCCTTTAAGTGTATACTGTAGTTTAGTGGTCACAAGTG  595

seq1  GCCTTATGTTATGCCTACCTTGGAAAGTTTTTATATTACATTTAAAAGAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATGTTATGCCTACCTTGGAAAGTTTTTATATTACATTTAAAAGAT  645

seq1  AACTTTGGATATAGTAATCATTGAAAAGATTTTTGTCTTTAAAAATTTCT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGGATATAGTAATCATTGAAAAGATTTTTGTCTTTAAAAATTTCT  695

seq1  AGTGAGAGGTTGGATGTTACAGTGAATTTACCTTTGTTAGTATGTTGATA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGGTTGGATGTTACAGTGAATTTACCTTTGTTAGTATGTTGATA  745

seq1  CTTTTATTTTCTTTGTAGTGTTAGGATTTGAGCTACACTGTGCTCAGGAG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTCTTTGTAGTGTTAGGATTTGAGCTACACTGTGCTCAGGAG  795

seq1  CAATTCTTTCTGTCCATGATTTATTTGGGTTTTACACATCTTTCTGTATA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTTCTGTCCATGATTTATTTGGGTTTTACACATCTTTCTGTATA  845

seq1  GATGTTCATTTCTTTCTCGATATTTTAGAAAATTTCTGCTGTTATTTCAT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCATTTCTTTCTCGATATTTTAGAAAATTTCTGCTGTTATTTCAT  895

seq1  TGACTTAGTCTCAGTGCTTTTAAGTTCCTTCTGCTCCATGTATTCTTTAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAGTCTCAGTGCTTTTAAGTTCCTTCTGCTCCATGTATTCTTTAG  945

seq1  TTTCATTTTGATCATGTTCTAAAAGGTTTGGTTGTGTTTACTTATTGTGT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTGATCATGTTCTAAAAGGTTTGGTTGTGTTTACTTATTGTGT  995

seq1  TGTTGTGTGTCTGAATACAGATTTTTCTTCAATTCCTGCTGTTCTGTCTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTGTCTGAATACAGATTTTTCTTCAATTCCTGCTGTTCTGTCTT  1045

seq1  GTACTTGATTTGGTCTATTATTTATGGTTTCCACTGAGATTTTTAATTAT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGATTTGGTCTATTATTTATGGTTTCCACTGAGATTTTTAATTAT  1095

seq1  TTTATTTATTTCCATCATCCTCCCTCCCAGCACCAGTCTCAATTTCTTTG  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTCCATCATCCTCCCTCCCAGCACCAGTCTCAATTTCTTTG  1145

seq1  CTAAACTTCTCATTGACATGTACTTCAGAATTC  1167
      |||||||||||||||||||||||||||||||||
seq2  CTAAACTTCTCATTGACATGTACTTCAGAATTC  1178


| Home | SequenceCutter | Blast | Download |