BAC Information

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BAC

Clone NameB6Ng01-296O19
Chromosome7 (Build37)
Map Location 4,770,891 - 4,924,104
singlet/doubletdoublet
Overlap geneD430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078
Upstream geneLOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s
Downstream geneZfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296O19.bB6Ng01-296O19.g
ACCGA092413GA092414
length1,095532
definitionB6Ng01-296O19.b B6Ng01-296O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,770,891 - 4,771,977)(4,923,567 - 4,924,104)
sequence
gaattcctgtcgcccagtccacactcagaaacatatacatacacagaata
attaaaaataaaaatataaaaggcaaaattaaaaggtgtagattttagag
gttcacaagacaataggttaagaatagctgctcgaaggctgtgttagtgg
cactgtggagttgggaacctggaaggaaaggtgttaggttacagaggcag
aaccgcgagccacagcagacgtctctttctgcccttctagaatgttctgt
agaaggagagggctctttccccctccttcccactgctttctctttttctt
tcttctctatataattttcattacattcctgtatgtatgtatatagtttc
atacatcccagcatccatgtagaggtcagaggacagctttcaggagcagg
ctatcatcttcactctatgggtactcaggggcacctcaggcttggcgggt
gtcatcatgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgttccc
aagacagggtttcattatgtagctctggctatcctggaactcactcggta
caacaggctggcctcccgcgtgctggtattaaggtgtgcaccactactgc
ccactcagtggccaccatctttaacagctgatccatcttcttttcttcct
ttttctttccctccatccccttccttccattcttcacccttcctctgttt
ttttttttaataaacaaacaaaacttaatcttattttatgggtatgaatc
ttttgcctgcttgcatgcttgtgcagcacatgcatacagtaacctcagag
cctagaagaggatattggatcccctggaactggagttatagatggttgtg
agccaccatatggtgttggaaacagaactcgggttctctgggtgagcagc
cagtgcttttagccagtgagctgtctctccagctccactccatcctgacc
ccatttccttgagataaactctcactatgcatccctgattgacctggaac
ctggtgtgcagtctccatgccttgtctccagagttcttggtttaagtggc
caatcttcctcttcctctccctacctctctctccctcccctccct
ctgagcatgtgggagtctagacccctggacccgagagagaaggggttgac
gtggaaccccaggtctggttgtggaaggctgagatctagacccctgggtc
tgaggcagaaggctgaagtcagggttggcctctgtgaaggaggaatgctg
agggtctagatccctgggtctaggagaggagggctgaagatctggactcc
tggatttagggaagcggggttaatgcctggactcccatagtcaaggcagg
ctgggcttaggcttgttattaaggggcaaggctgtggaaacagccctgga
ttctggccttcagcacttccagcccctggaggaagttctgaactcctttc
aattatcccagatggctttgaaagagcctcccctcctttttcctctgctc
tcaggcctggctcttgggggttcacaatatgtttcgtcccctctgtcctg
ggaccagcgcccagagttcaagccggtctaagtttggaagagggagggag
gggacatcgggttagggaggtgagggaggcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4770891_4771977
seq2: B6Ng01-296O19.b_50_1144

seq1  GAATTCCTGTCGCCCAGTCCACACTCAGAAACATATACATACACAGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCGCCCAGTCCACACTCAGAAACATATACATACACAGAATA  50

seq1  ATTAAAAATAAAAATATAAAAGGCAAAATTAAAAGGTGTAGATTTTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATAAAAATATAAAAGGCAAAATTAAAAGGTGTAGATTTTAGAG  100

seq1  GTTCACAAGACAATAGGTTAAGAATAGCTGCTCGAAGGCTGTGTTAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAAGACAATAGGTTAAGAATAGCTGCTCGAAGGCTGTGTTAGTGG  150

seq1  CACTGTGGAGTTGGGAACCTGGAAGGAAAGGTGTTAGGTTACAGAGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGAGTTGGGAACCTGGAAGGAAAGGTGTTAGGTTACAGAGGCAG  200

seq1  AACCGCGAGCCACAGCAGACGTCTCTTTCTGCCCTTCTAGAATGTTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCGAGCCACAGCAGACGTCTCTTTCTGCCCTTCTAGAATGTTCTGT  250

seq1  AGAAGGAGAGGGCTCTTTCCCCCTCCTTCCCACTGCTTTCTCTTTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAGGGCTCTTTCCCCCTCCTTCCCACTGCTTTCTCTTTTTCTT  300

seq1  TCTTCTCTATATAATTTTCATTACATTCCTGTATGTATGTATATAGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTATATAATTTTCATTACATTCCTGTATGTATGTATATAGTTTC  350

seq1  ATACATCCCAGCATCCATGTAGAGGTCAGAGGACAGCTTTCAGGAGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCCAGCATCCATGTAGAGGTCAGAGGACAGCTTTCAGGAGCAGG  400

seq1  CTATCATCTTCACTCTATGGGTACTCAGGGGCACCTCAGGCTTGGCGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATCTTCACTCTATGGGTACTCAGGGGCACCTCAGGCTTGGCGGGT  450

seq1  GTCATCATGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGTGTGTGTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCATGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGTGTGTGTTCCC  500

seq1  AAGACAGGGTTTCATTATGTAGCTCTGGCTATCCTGGAACTCACTCGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGGTTTCATTATGTAGCTCTGGCTATCCTGGAACTCACTCGGTA  550

seq1  CAACAGGCTGGCCTCCCGCGTGCTGGTATTAAGGTGTGCACCACTACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGCTGGCCTCCCGCGTGCTGGTATTAAGGTGTGCACCACTACTGC  600

seq1  CCACTCAGTGGCCACCATCTTTAACAGCTGATCCATCTTCTTTTCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAGTGGCCACCATCTTTAACAGCTGATCCATCTTCTTTTCTTCCT  650

seq1  TTTTCTTTCCCTCCATCCCCTTCCTTCCATTCTTCACCCTTCCTCTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCCCTCCATCCCCTTCCTTCCATTCTTCACCCTTCCTCTGTTT  700

seq1  TTTTTTTTAATAAACAAACAAAACTTAATCTTATTTTATGGGTATGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATAAACAAACAAAACTTAATCTTATTTTATGGGTATGAATC  750

seq1  TTTTGCCTGCTTGCATGCTTGTGCAGCACATGCATACAGTAACCTCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTGCTTGCATGCTTGTGCAGCACATGCATACAGTAACCTCAGAG  800

seq1  CCTAGAAGAGGATATTGGATCCCCTGGAACTGGAGTTATAGATGGTTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAGAGGATATTGGATCCCCTGGAACTGGAGTTATAGATGGTTGTG  850

seq1  AGCCACCATATGGTGTTGGAAACAGAACTCGGGTTCTCTGGGTGAGCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATATGGTGTTGGAAACAGAACTCGGGTTCTCTGGGTGAGCAGC  900

seq1  CAGTGCTTTTAGCCAGTGAGCTGTCTCTCCAGCTCCACTCCATCCTGACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTTAGCCAGTGAGCTGTCTCTCCAGCTCCACTCCATCCTGACC  950

seq1  CCCATTTCTTGAGATAAACTCTCACTATGCATCCCTGATTGACCTGGAA-  999
      ||  || |||||||||||||||||||||||||||||||||||||||||| 
seq2  CCATTTCCTTGAGATAAACTCTCACTATGCATCCCTGATTGACCTGGAAC  1000

seq1  CTGGTGTGCAGGTCT-CATGCCTTGTCTCCAGAGTTC-TGGTTTTAGTGG  1047
      |||||||||| |||| ||||||||||||||||||||| |||||| |||||
seq2  CTGGTGTGCA-GTCTCCATGCCTTGTCTCCAGAGTTCTTGGTTTAAGTGG  1049

seq1  -CAATCT--CTCTTCCTCTCCCT--CCCTCTCTCCCT-CCCTCCCT  1087
       ||||||  ||||||||||||||  | |||||||||| ||||||||
seq2  CCAATCTTCCTCTTCCTCTCCCTACCTCTCTCTCCCTCCCCTCCCT  1095

seq1: chr7_4923567_4924104
seq2: B6Ng01-296O19.g_71_608 (reverse)

seq1  ACGCCTCCCTCACCTCCCTAACCCGATGTCCCCTCCCTCCCTCTTCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTCCCTCACCTCCCTAACCCGATGTCCCCTCCCTCCCTCTTCCAAA  50

seq1  CTTAGACCGGCTTGAACTCTGGGCGCTGGTCCCAGGACAGAGGGGACGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACCGGCTTGAACTCTGGGCGCTGGTCCCAGGACAGAGGGGACGAA  100

seq1  ACATATTGTGAACCCCCAAGAGCCAGGCCTGAGAGCAGAGGAAAAAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGTGAACCCCCAAGAGCCAGGCCTGAGAGCAGAGGAAAAAGGAG  150

seq1  GGGAGGCTCTTTCAAAGCCATCTGGGATAATTGAAAGGAGTTCAGAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCTCTTTCAAAGCCATCTGGGATAATTGAAAGGAGTTCAGAACTT  200

seq1  CCTCCAGGGGCTGGAAGTGCTGAAGGCCAGAATCCAGGGCTGTTTCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGGGCTGGAAGTGCTGAAGGCCAGAATCCAGGGCTGTTTCCACA  250

seq1  GCCTTGCCCCTTAATAACAAGCCTAAGCCCAGCCTGCCTTGACTATGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCCCCTTAATAACAAGCCTAAGCCCAGCCTGCCTTGACTATGGGA  300

seq1  GTCCAGGCATTAACCCCGCTTCCCTAAATCCAGGAGTCCAGATCTTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGCATTAACCCCGCTTCCCTAAATCCAGGAGTCCAGATCTTCAGC  350

seq1  CCTCCTCTCCTAGACCCAGGGATCTAGACCCTCAGCATTCCTCCTTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTCCTAGACCCAGGGATCTAGACCCTCAGCATTCCTCCTTCACA  400

seq1  GAGGCCAACCCTGACTTCAGCCTTCTGCCTCAGACCCAGGGGTCTAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAACCCTGACTTCAGCCTTCTGCCTCAGACCCAGGGGTCTAGATC  450

seq1  TCAGCCTTCCACAACCAGACCTGGGGTTCCACGTCAACCCCTTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTCCACAACCAGACCTGGGGTTCCACGTCAACCCCTTCTCTCTC  500

seq1  GGGTCCAGGGGTCTAGACTCCCACATGCTCAGGAATTC  538
      ||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAGGGGTCTAGACTCCCACATGCTCAGGAATTC  538